RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 UBR1Q8IWV7 1749 aa12.74□□□□□ -0.37
RTF1-206ENST00000560447 CPS1P31327 1500 aa12.73□□□□□ -0.37
RTF1-206ENST00000560447 FAM135BQ49AJ0 1406 aa12.73□□□□□ -0.37
RTF1-206ENST00000560447 CCDC27Q2M243 656 aa12.73□□□□□ -0.37
RTF1-206ENST00000560447 FBXO31Q5XUX0 539 aaPredicted RBP12.72□□□□□ -0.37
RTF1-206ENST00000560447 RUNDC1Q96C34 613 aa12.72□□□□□ -0.37
RTF1-206ENST00000560447 A0A1W2PP64 1363 aa12.71□□□□□ -0.37
RTF1-206ENST00000560447 POGKQ9P215 609 aa12.71□□□□□ -0.37
RTF1-206ENST00000560447 SALL2Q9Y467 1007 aaPredicted RBP12.71□□□□□ -0.37
RTF1-206ENST00000560447 CDC42BPGQ6DT37 1551 aa12.71□□□□□ -0.37
RTF1-206ENST00000560447 NLRP1Q9C000 1473 aa12.71□□□□□ -0.38
RTF1-206ENST00000560447 CD163L1Q9NR16 1453 aa12.71□□□□□ -0.38
RTF1-206ENST00000560447 ZMYM3Q14202 1370 aa12.7□□□□□ -0.38
RTF1-206ENST00000560447 HDGFL2Q7Z4V5 671 aaPredicted RBP12.7□□□□□ -0.38
RTF1-206ENST00000560447 ZNF579Q8NAF0 562 aaKnown RBP12.7□□□□□ -0.38
RTF1-206ENST00000560447 ESF1Q9H501 851 aaKnown RBP12.7□□□□□ -0.38
RTF1-206ENST00000560447 TNRQ92752 1358 aa12.69□□□□□ -0.38
RTF1-206ENST00000560447 APAF1O14727 1248 aa12.69□□□□□ -0.38
RTF1-206ENST00000560447 TCERG1O14776 1098 aaKnown RBP12.69□□□□□ -0.38
RTF1-206ENST00000560447 CLCN6P51797 869 aa12.69□□□□□ -0.38
RTF1-206ENST00000560447 WDR63Q8IWG1 891 aa12.69□□□□□ -0.38
RTF1-206ENST00000560447 PRAM1Q96QH2 718 aa12.69□□□□□ -0.38
RTF1-206ENST00000560447 MON2Q7Z3U7 1717 aa12.68□□□□□ -0.38
RTF1-206ENST00000560447 COL3A1P02461 1466 aaPredicted RBP12.68□□□□□ -0.38
RTF1-206ENST00000560447 MS4A1P11836 297 aa12.68□□□□□ -0.38
RTF1-206ENST00000560447 SRPK2P78362 688 aaKnown RBP12.68□□□□□ -0.38
RTF1-206ENST00000560447 EXOC6Q8TAG9 804 aa12.68□□□□□ -0.38
RTF1-206ENST00000560447 AKAP12Q02952 1782 aa12.68□□□□□ -0.38
RTF1-206ENST00000560447 AAMPQ13685 434 aa12.67□□□□□ -0.38
RTF1-206ENST00000560447 NUTM2DQ5VT03 806 aaPredicted RBP12.67□□□□□ -0.38
RTF1-206ENST00000560447 PNNQ9H307 717 aaKnown RBP12.67□□□□□ -0.38
RTF1-206ENST00000560447 CABP2Q9NPB3 220 aa12.67□□□□□ -0.38
RTF1-206ENST00000560447 ZRANB1Q9UGI0 708 aa12.67□□□□□ -0.38
RTF1-206ENST00000560447 ITSN1Q15811 1721 aa12.67□□□□□ -0.38
RTF1-206ENST00000560447 MTHFSP49914 203 aa12.66□□□□□ -0.38
RTF1-206ENST00000560447 WWC1Q8IX03 1113 aa12.65□□□□□ -0.38
RTF1-206ENST00000560447 STK26Q9P289 416 aa12.65□□□□□ -0.38
RTF1-206ENST00000560447 PNPLA6Q8IY17 1366 aa12.65□□□□□ -0.38
RTF1-206ENST00000560447 DIP2AQ14689 1571 aa12.64□□□□□ -0.39
RTF1-206ENST00000560447 MINK1Q8N4C8 1332 aaPredicted RBP12.64□□□□□ -0.39
RTF1-206ENST00000560447 EDC4Q6P2E9 1401 aaKnown RBP12.64□□□□□ -0.39
RTF1-206ENST00000560447 CT47B1P0C2W7 299 aaPredicted RBP12.64□□□□□ -0.39
RTF1-206ENST00000560447 CCDC146Q8IYE0 955 aa12.64□□□□□ -0.39
RTF1-206ENST00000560447 CDK19Q9BWU1 502 aa12.64□□□□□ -0.39
RTF1-206ENST00000560447 TMEM2Q9UHN6 1383 aa12.64□□□□□ -0.39
RTF1-206ENST00000560447 CPSF1Q10570 1443 aaKnown RBP12.63□□□□□ -0.39
RTF1-206ENST00000560447 SLIT1O75093 1534 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 SENP3-EIF4A1A0A087X0R7 540 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 PDE3AQ14432 1141 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 CRBNQ96SW2 442 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 PLEKHG1Q9ULL1 1385 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 TOPAZ1Q8N9V7 1692 aa12.63□□□□□ -0.39
RTF1-206ENST00000560447 C3P01024 1663 aa12.62□□□□□ -0.39
RTF1-206ENST00000560447 FYB1O15117 783 aa12.62□□□□□ -0.39
RTF1-206ENST00000560447 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
RTF1-206ENST00000560447 TCP11L2Q8N4U5 519 aa12.62□□□□□ -0.39
RTF1-206ENST00000560447 IL16Q14005 1332 aa12.62□□□□□ -0.39
RTF1-206ENST00000560447 FER1L4A9Z1Z3 1794 aa12.61□□□□□ -0.39
RTF1-206ENST00000560447 RIMS1Q86UR5 1692 aaKnown RBP12.61□□□□□ -0.39
RTF1-206ENST00000560447 ARHGAP23Q9P227 1491 aa12.61□□□□□ -0.39
RTF1-206ENST00000560447 ANP32EQ9BTT0 268 aa12.61□□□□□ -0.39
RTF1-206ENST00000560447 MYH16Q9H6N6 1097 aa12.61□□□□□ -0.39
RTF1-206ENST00000560447 MAP2P11137 1827 aaKnown RBP12.6□□□□□ -0.39
RTF1-206ENST00000560447 AATKQ6ZMQ8 1374 aa12.6□□□□□ -0.39
RTF1-206ENST00000560447 WASLO00401 505 aaPredicted RBP12.6□□□□□ -0.39
RTF1-206ENST00000560447 POTEIP0CG38 1075 aa12.6□□□□□ -0.39
RTF1-206ENST00000560447 KDM2BQ8NHM5 1336 aa12.6□□□□□ -0.39
RTF1-206ENST00000560447 CDK12Q9NYV4 1490 aaPredicted RBP12.59□□□□□ -0.39
RTF1-206ENST00000560447 SAFB2Q14151 953 aaKnown RBP eCLIP12.59□□□□□ -0.39
RTF1-206ENST00000560447 MLECQ14165 292 aa12.59□□□□□ -0.39
RTF1-206ENST00000560447 ADAMTS13Q76LX8 1427 aa12.59□□□□□ -0.39
RTF1-206ENST00000560447 METP08581 1390 aa12.58□□□□□ -0.4
RTF1-206ENST00000560447 PPIP5K1Q6PFW1 1433 aa12.58□□□□□ -0.4
RTF1-206ENST00000560447 NRKQ7Z2Y5 1582 aa12.58□□□□□ -0.4
RTF1-206ENST00000560447 PLIN1O60240 522 aa12.57□□□□□ -0.4
RTF1-206ENST00000560447 U2AF1L5P0DN76 240 aaPredicted RBP12.57□□□□□ -0.4
RTF1-206ENST00000560447 U2AF1Q01081 240 aaKnown RBP eCLIP12.57□□□□□ -0.4
RTF1-206ENST00000560447 GGNBP2Q9H3C7 697 aa12.57□□□□□ -0.4
RTF1-206ENST00000560447 CABP1Q9NZU7 370 aa12.57□□□□□ -0.4
RTF1-206ENST00000560447 DIAPH1O60610 1272 aaKnown RBP12.56□□□□□ -0.4
RTF1-206ENST00000560447 PAK3O75914 559 aaPredicted RBP12.56□□□□□ -0.4
RTF1-206ENST00000560447 TNNT2P45379 298 aaPredicted RBP12.56□□□□□ -0.4
RTF1-206ENST00000560447 PLEKHF1Q96S99 279 aa12.56□□□□□ -0.4
RTF1-206ENST00000560447 CCDC61Q9Y6R9 512 aa12.56□□□□□ -0.4
RTF1-206ENST00000560447 NALCNQ8IZF0 1738 aa12.56□□□□□ -0.4
RTF1-206ENST00000560447 MAPK8IP3Q9UPT6 1336 aa12.56□□□□□ -0.4
RTF1-206ENST00000560447 PTCH1Q13635 1447 aa12.55□□□□□ -0.4
RTF1-206ENST00000560447 FCHSD2O94868 740 aa12.55□□□□□ -0.4
RTF1-206ENST00000560447 ANP32AP39687 249 aaKnown RBP12.55□□□□□ -0.4
RTF1-206ENST00000560447 VIRMAQ69YN4 1812 aaKnown RBP12.55□□□□□ -0.4
RTF1-206ENST00000560447 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.54□□□□□ -0.4
RTF1-206ENST00000560447 LRRC7Q96NW7 1537 aa12.54□□□□□ -0.4
RTF1-206ENST00000560447 RARSP54136 660 aaKnown RBP12.53□□□□□ -0.4
RTF1-206ENST00000560447 C20orf194Q5TEA3 1177 aa12.53□□□□□ -0.4
RTF1-206ENST00000560447 WAPLQ7Z5K2 1190 aa12.53□□□□□ -0.4
RTF1-206ENST00000560447 ZNF428Q96B54 188 aa12.53□□□□□ -0.4
RTF1-206ENST00000560447 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
RTF1-206ENST00000560447 PHF12Q96QT6 1004 aa12.53□□□□□ -0.4
RTF1-206ENST00000560447 XRN1Q8IZH2 1706 aaKnown RBP12.52□□□□□ -0.41
RTF1-206ENST00000560447 NEFMP07197 916 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms