RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 THEMISQ8N1K5 641 aaPredicted RBP18.46■□□□□ 0.54
CARMIL3-203ENST00000560349 BCAR3O75815 825 aa18.45■□□□□ 0.54
CARMIL3-203ENST00000560349 ATP7BP35670 1465 aa18.45■□□□□ 0.54
CARMIL3-203ENST00000560349 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.44■□□□□ 0.54
CARMIL3-203ENST00000560349 FANCIQ9NVI1 1328 aa18.44■□□□□ 0.54
CARMIL3-203ENST00000560349 SOX12O15370 315 aa18.44■□□□□ 0.54
CARMIL3-203ENST00000560349 RRS1Q15050 365 aaKnown RBP18.44■□□□□ 0.54
CARMIL3-203ENST00000560349 PMFBP1Q8TBY8 1022 aa18.44■□□□□ 0.54
CARMIL3-203ENST00000560349 POLKQ9UBT6 870 aa18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 CPSF1Q10570 1443 aaKnown RBP18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 RIMS1Q86UR5 1692 aaKnown RBP18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 E9PSI1 815 aa18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 TRMT2AQ8IZ69 625 aaKnown RBP18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 KNDC1Q76NI1 1749 aa18.43■□□□□ 0.54
CARMIL3-203ENST00000560349 KIF20BQ96Q89 1820 aa18.42■□□□□ 0.54
CARMIL3-203ENST00000560349 IQSEC2Q5JU85 1478 aa18.42■□□□□ 0.54
CARMIL3-203ENST00000560349 COL3A1P02461 1466 aaPredicted RBP18.42■□□□□ 0.54
CARMIL3-203ENST00000560349 DIAPH1O60610 1272 aaKnown RBP18.41■□□□□ 0.54
CARMIL3-203ENST00000560349 HMOX1P09601 288 aa18.41■□□□□ 0.54
CARMIL3-203ENST00000560349 NKTRP30414 1462 aaKnown RBP18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 ARHGAP23Q9P227 1491 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 SKAP1Q86WV1 359 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 SLIT1O75093 1534 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 EDC4Q6P2E9 1401 aaKnown RBP18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 ACEP12821 1306 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 ANKRD26Q9UPS8 1709 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 MED14O60244 1454 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 KCNA6P17658 529 aa18.4■□□□□ 0.54
CARMIL3-203ENST00000560349 SIRT1Q96EB6 747 aa18.39■□□□□ 0.54
CARMIL3-203ENST00000560349 BCL2L13Q9BXK5 485 aa18.39■□□□□ 0.54
CARMIL3-203ENST00000560349 COG3Q96JB2 828 aa18.38■□□□□ 0.53
CARMIL3-203ENST00000560349 PLEKHF1Q96S99 279 aa18.38■□□□□ 0.53
CARMIL3-203ENST00000560349 TBX22Q9Y458 520 aa18.38■□□□□ 0.53
CARMIL3-203ENST00000560349 CDC42BPGQ6DT37 1551 aa18.38■□□□□ 0.53
CARMIL3-203ENST00000560349 TSR2Q969E8 191 aaKnown RBP18.37■□□□□ 0.53
CARMIL3-203ENST00000560349 MAPK8IP3Q9UPT6 1336 aa18.37■□□□□ 0.53
CARMIL3-203ENST00000560349 CEP170BQ9Y4F5 1589 aaPredicted RBP18.36■□□□□ 0.53
CARMIL3-203ENST00000560349 TMPOP42166 694 aaKnown RBP18.35■□□□□ 0.53
CARMIL3-203ENST00000560349 PRKAR2BP31323 418 aa18.35■□□□□ 0.53
CARMIL3-203ENST00000560349 PHF23Q9BUL5 403 aaPredicted RBP18.35■□□□□ 0.53
CARMIL3-203ENST00000560349 MAP2P11137 1827 aaKnown RBP18.34■□□□□ 0.53
CARMIL3-203ENST00000560349 FRAT1Q92837 279 aaPredicted RBP18.34■□□□□ 0.53
CARMIL3-203ENST00000560349 PNPLA6Q8IY17 1366 aa18.34■□□□□ 0.53
CARMIL3-203ENST00000560349 TTC21BQ7Z4L5 1316 aa18.33■□□□□ 0.53
CARMIL3-203ENST00000560349 RIPK4P57078 832 aa18.33■□□□□ 0.52
CARMIL3-203ENST00000560349 DNAJC5Q9H3Z4 198 aa18.33■□□□□ 0.52
CARMIL3-203ENST00000560349 TRIM35Q9UPQ4 493 aa18.33■□□□□ 0.52
CARMIL3-203ENST00000560349 PHACTR3Q96KR7 559 aa18.32■□□□□ 0.52
CARMIL3-203ENST00000560349 TNNQ9UQP3 1299 aa18.32■□□□□ 0.52
CARMIL3-203ENST00000560349 CANXP27824 592 aaKnown RBP18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 ITSN1Q15811 1721 aa18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 NUTM2GQ5VZR2 741 aa18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 NGEFQ8N5V2 710 aa18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 MON2Q7Z3U7 1717 aa18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 NGDNQ8NEJ9 315 aaKnown RBP18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 THUMPD2Q9BTF0 503 aaKnown RBP18.31■□□□□ 0.52
CARMIL3-203ENST00000560349 LRRC7Q96NW7 1537 aa18.3■□□□□ 0.52
CARMIL3-203ENST00000560349 ZNF692Q9BU19 519 aaPredicted RBP18.3■□□□□ 0.52
CARMIL3-203ENST00000560349 WDR63Q8IWG1 891 aa18.3■□□□□ 0.52
CARMIL3-203ENST00000560349 PANK1Q8TE04 598 aa18.3■□□□□ 0.52
CARMIL3-203ENST00000560349 RSPH6AQ9H0K4 717 aa18.3■□□□□ 0.52
CARMIL3-203ENST00000560349 ANKLE2Q86XL3 938 aa18.29■□□□□ 0.52
CARMIL3-203ENST00000560349 ADGRB2O60241 1585 aa18.29■□□□□ 0.52
CARMIL3-203ENST00000560349 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.29■□□□□ 0.52
CARMIL3-203ENST00000560349 RGPD8O14715 1765 aaPredicted RBP18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 AKAP12Q02952 1782 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 USP6P35125 1406 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 PLEKHG3A1L390 1219 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 IL13P35225 146 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 CCDC27Q2M243 656 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 LAS1LQ9Y4W2 734 aaKnown RBP18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 PTCH1Q13635 1447 aa18.28■□□□□ 0.52
CARMIL3-203ENST00000560349 DIP2AQ14689 1571 aa18.27■□□□□ 0.52
CARMIL3-203ENST00000560349 PLEKHG5O94827 1062 aa18.27■□□□□ 0.52
CARMIL3-203ENST00000560349 RARSP54136 660 aaKnown RBP18.27■□□□□ 0.52
CARMIL3-203ENST00000560349 CLUAP1Q96AJ1 413 aa18.27■□□□□ 0.52
CARMIL3-203ENST00000560349 AEBP1Q8IUX7 1158 aa18.26■□□□□ 0.51
CARMIL3-203ENST00000560349 COG6Q9Y2V7 657 aa18.26■□□□□ 0.51
CARMIL3-203ENST00000560349 EXOSC9Q06265 439 aaKnown RBP18.26■□□□□ 0.51
CARMIL3-203ENST00000560349 TOPAZ1Q8N9V7 1692 aa18.25■□□□□ 0.51
CARMIL3-203ENST00000560349 FCHSD2O94868 740 aa18.25■□□□□ 0.51
CARMIL3-203ENST00000560349 HSP90AB2PQ58FF8 381 aa18.25■□□□□ 0.51
CARMIL3-203ENST00000560349 MYH16Q9H6N6 1097 aa18.25■□□□□ 0.51
CARMIL3-203ENST00000560349 PAK3O75914 559 aaPredicted RBP18.24■□□□□ 0.51
CARMIL3-203ENST00000560349 C14orf37Q86TY3 774 aa18.24■□□□□ 0.51
CARMIL3-203ENST00000560349 XRN1Q8IZH2 1706 aaKnown RBP18.23■□□□□ 0.51
CARMIL3-203ENST00000560349 CDK12Q9NYV4 1490 aaPredicted RBP18.23■□□□□ 0.51
CARMIL3-203ENST00000560349 AATKQ6ZMQ8 1374 aa18.23■□□□□ 0.51
CARMIL3-203ENST00000560349 ADAMTSL3P82987 1691 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 FAM83GA6ND36 823 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 NEFMP07197 916 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 RLBP1P12271 317 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 EIF4A2Q14240 407 aaKnown RBP18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 NRKQ7Z2Y5 1582 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 OVOS2A0A0J9YW53 1432 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 OVOS2Q6IE36 1432 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 DCTN1Q14203 1278 aa18.22■□□□□ 0.51
CARMIL3-203ENST00000560349 SULT6B1Q6IMI4 303 aa18.2■□□□□ 0.5
CARMIL3-203ENST00000560349 NLRP6P59044 892 aa18.19■□□□□ 0.5
CARMIL3-203ENST00000560349 NFE2L2Q16236 605 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms