RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 AMER1Q5JTC6 1135 aaPredicted RBP23.85■■□□□ 1.41
SNX1-208ENST00000559844 NGDNQ8NEJ9 315 aaKnown RBP23.85■■□□□ 1.41
SNX1-208ENST00000559844 ACEP12821 1306 aa23.84■■□□□ 1.41
SNX1-208ENST00000559844 CD163L1Q9NR16 1453 aa23.84■■□□□ 1.41
SNX1-208ENST00000559844 POLR3AO14802 1390 aaPredicted RBP23.83■■□□□ 1.41
SNX1-208ENST00000559844 FOXO3O43524 673 aa23.83■■□□□ 1.41
SNX1-208ENST00000559844 TERF2IPQ9NYB0 399 aa23.82■■□□□ 1.4
SNX1-208ENST00000559844 MON2Q7Z3U7 1717 aa23.82■■□□□ 1.4
SNX1-208ENST00000559844 A0A1W2PP64 1363 aa23.82■■□□□ 1.4
SNX1-208ENST00000559844 PELP1Q8IZL8 1130 aaKnown RBP23.82■■□□□ 1.4
SNX1-208ENST00000559844 ANKRD36BQ8N2N9 1353 aa23.81■■□□□ 1.4
SNX1-208ENST00000559844 NHSL1Q5SYE7 1610 aa23.81■■□□□ 1.4
SNX1-208ENST00000559844 CPSF1Q10570 1443 aaKnown RBP23.8■■□□□ 1.4
SNX1-208ENST00000559844 HDGFL2Q7Z4V5 671 aaPredicted RBP23.8■■□□□ 1.4
SNX1-208ENST00000559844 SMG6Q86US8 1419 aaKnown RBP23.8■■□□□ 1.4
SNX1-208ENST00000559844 DDX17Q92841 729 aaKnown RBP23.8■■□□□ 1.4
SNX1-208ENST00000559844 XPCQ01831 940 aaPredicted RBP23.78■■□□□ 1.4
SNX1-208ENST00000559844 PSME1Q06323 249 aa23.78■■□□□ 1.4
SNX1-208ENST00000559844 NPHP3Q7Z494 1330 aa23.77■■□□□ 1.4
SNX1-208ENST00000559844 PPP2R1AP30153 589 aa23.76■■□□□ 1.39
SNX1-208ENST00000559844 ZNF692Q9BU19 519 aaPredicted RBP23.76■■□□□ 1.39
SNX1-208ENST00000559844 USP6P35125 1406 aa23.76■■□□□ 1.39
SNX1-208ENST00000559844 NRKQ7Z2Y5 1582 aa23.76■■□□□ 1.39
SNX1-208ENST00000559844 AHDC1Q5TGY3 1603 aaPredicted RBP23.75■■□□□ 1.39
SNX1-208ENST00000559844 PXDNQ92626 1479 aa23.74■■□□□ 1.39
SNX1-208ENST00000559844 PHLPP1O60346 1717 aa23.74■■□□□ 1.39
SNX1-208ENST00000559844 TRPM3Q9HCF6 1732 aaPredicted RBP23.74■■□□□ 1.39
SNX1-208ENST00000559844 CARD14Q9BXL6 1004 aa23.74■■□□□ 1.39
SNX1-208ENST00000559844 KRT28Q7Z3Y7 464 aa23.73■■□□□ 1.39
SNX1-208ENST00000559844 NUDCQ9Y266 331 aa23.73■■□□□ 1.39
SNX1-208ENST00000559844 NSD3Q9BZ95 1437 aa23.73■■□□□ 1.39
SNX1-208ENST00000559844 BLMP54132 1417 aaPredicted RBP23.72■■□□□ 1.39
SNX1-208ENST00000559844 ERICH6BQ5W0A0 696 aa23.72■■□□□ 1.39
SNX1-208ENST00000559844 EDC4Q6P2E9 1401 aaKnown RBP23.72■■□□□ 1.39
SNX1-208ENST00000559844 PAK3O75914 559 aaPredicted RBP23.7■■□□□ 1.38
SNX1-208ENST00000559844 SSH2Q76I76 1423 aa23.69■■□□□ 1.38
SNX1-208ENST00000559844 SOS2Q07890 1332 aaPredicted RBP23.69■■□□□ 1.38
SNX1-208ENST00000559844 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.69■■□□□ 1.38
SNX1-208ENST00000559844 KIF20BQ96Q89 1820 aa23.69■■□□□ 1.38
SNX1-208ENST00000559844 COL16A1Q07092 1604 aaPredicted RBP23.67■■□□□ 1.38
SNX1-208ENST00000559844 TTC21BQ7Z4L5 1316 aa23.67■■□□□ 1.38
SNX1-208ENST00000559844 PDE3BQ13370 1112 aa23.67■■□□□ 1.38
SNX1-208ENST00000559844 ALS2Q96Q42 1657 aa23.66■■□□□ 1.38
SNX1-208ENST00000559844 PIK3C2AO00443 1686 aa23.66■■□□□ 1.38
SNX1-208ENST00000559844 SBNO1A3KN83 1393 aa23.65■■□□□ 1.38
SNX1-208ENST00000559844 TTC21AQ8NDW8 1320 aa23.64■■□□□ 1.38
SNX1-208ENST00000559844 TNS3Q68CZ2 1445 aa23.64■■□□□ 1.38
SNX1-208ENST00000559844 WDR43Q15061 677 aaKnown RBP eCLIP23.64■■□□□ 1.38
SNX1-208ENST00000559844 LMOD2Q6P5Q4 547 aa23.63■■□□□ 1.37
SNX1-208ENST00000559844 CGNL1Q0VF96 1302 aa23.63■■□□□ 1.37
SNX1-208ENST00000559844 NME9Q86XW9 330 aa23.63■■□□□ 1.37
SNX1-208ENST00000559844 SPATA31A3Q5VYP0 1347 aa23.62■■□□□ 1.37
SNX1-208ENST00000559844 ABTB2Q8N961 1025 aa23.62■■□□□ 1.37
SNX1-208ENST00000559844 FBXO41Q8TF61 875 aa23.61■■□□□ 1.37
SNX1-208ENST00000559844 LRRC59Q96AG4 307 aaKnown RBP23.6■■□□□ 1.37
SNX1-208ENST00000559844 ANKRD26Q9UPS8 1709 aa23.6■■□□□ 1.37
SNX1-208ENST00000559844 NSD2O96028 1365 aa23.6■■□□□ 1.37
SNX1-208ENST00000559844 FYB1O15117 783 aa23.6■■□□□ 1.37
SNX1-208ENST00000559844 NUTM2GQ5VZR2 741 aa23.6■■□□□ 1.37
SNX1-208ENST00000559844 MARF1Q9Y4F3 1742 aaKnown RBP23.59■■□□□ 1.37
SNX1-208ENST00000559844 HSPA1LP34931 641 aa23.59■■□□□ 1.37
SNX1-208ENST00000559844 GGNBP2Q9H3C7 697 aa23.58■■□□□ 1.37
SNX1-208ENST00000559844 ADAMTS8Q9UP79 889 aa23.58■■□□□ 1.37
SNX1-208ENST00000559844 ARHGEF10O15013 1369 aa23.58■■□□□ 1.37
SNX1-208ENST00000559844 ZRANB1Q9UGI0 708 aa23.58■■□□□ 1.36
SNX1-208ENST00000559844 NLRP6P59044 892 aa23.57■■□□□ 1.36
SNX1-208ENST00000559844 USP54Q70EL1 1684 aa23.57■■□□□ 1.36
SNX1-208ENST00000559844 MORC1Q86VD1 984 aa23.56■■□□□ 1.36
SNX1-208ENST00000559844 PLEKHG5O94827 1062 aa23.56■■□□□ 1.36
SNX1-208ENST00000559844 RNF123Q5XPI4 1314 aa23.55■■□□□ 1.36
SNX1-208ENST00000559844 IRX6P78412 446 aaPredicted RBP23.54■■□□□ 1.36
SNX1-208ENST00000559844 OVOS2A0A0J9YW53 1432 aa23.54■■□□□ 1.36
SNX1-208ENST00000559844 OVOS2Q6IE36 1432 aa23.54■■□□□ 1.36
SNX1-208ENST00000559844 USP31Q70CQ4 1352 aa23.54■■□□□ 1.36
SNX1-208ENST00000559844 SENP3-EIF4A1A0A087X0R7 540 aa23.54■■□□□ 1.36
SNX1-208ENST00000559844 PNPLA6Q8IY17 1366 aa23.53■■□□□ 1.36
SNX1-208ENST00000559844 COG3Q96JB2 828 aa23.53■■□□□ 1.36
SNX1-208ENST00000559844 CRYBG1Q9Y4K1 1723 aa23.53■■□□□ 1.36
SNX1-208ENST00000559844 SHPRHQ149N8 1683 aa23.53■■□□□ 1.36
SNX1-208ENST00000559844 COL22A1Q8NFW1 1626 aaPredicted RBP23.53■■□□□ 1.36
SNX1-208ENST00000559844 MED1Q15648 1581 aaPredicted RBP23.52■■□□□ 1.36
SNX1-208ENST00000559844 ABCA3Q99758 1704 aa23.51■■□□□ 1.35
SNX1-208ENST00000559844 PHRF1Q9P1Y6 1649 aaKnown RBP23.51■■□□□ 1.35
SNX1-208ENST00000559844 PPP4R2Q9NY27 417 aa23.51■■□□□ 1.35
SNX1-208ENST00000559844 SALL2Q9Y467 1007 aaPredicted RBP23.51■■□□□ 1.35
SNX1-208ENST00000559844 CABLES1Q8TDN4 633 aa23.49■■□□□ 1.35
SNX1-208ENST00000559844 JCADQ9P266 1359 aa23.49■■□□□ 1.35
SNX1-208ENST00000559844 USP19O94966 1318 aa23.48■■□□□ 1.35
SNX1-208ENST00000559844 SOX12O15370 315 aa23.48■■□□□ 1.35
SNX1-208ENST00000559844 SLIT3O75094 1523 aa23.48■■□□□ 1.35
SNX1-208ENST00000559844 TNNT2P45379 298 aaPredicted RBP23.46■■□□□ 1.35
SNX1-208ENST00000559844 MAP2P11137 1827 aaKnown RBP23.45■■□□□ 1.34
SNX1-208ENST00000559844 HAP1P54257 671 aaPredicted RBP23.45■■□□□ 1.34
SNX1-208ENST00000559844 NGEFQ8N5V2 710 aa23.45■■□□□ 1.34
SNX1-208ENST00000559844 GCP02774 474 aa23.43■■□□□ 1.34
SNX1-208ENST00000559844 CFAP53Q96M91 514 aa23.43■■□□□ 1.34
SNX1-208ENST00000559844 LTN1O94822 1766 aa23.43■■□□□ 1.34
SNX1-208ENST00000559844 NFAT5O94916 1531 aa23.43■■□□□ 1.34
SNX1-208ENST00000559844 KCNH5Q8NCM2 988 aa23.43■■□□□ 1.34
SNX1-208ENST00000559844 FBLN1P23142 703 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms