RNA–Protein interactions for RNA: ENST00000559511.5

SPG11-217, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-217ENST00000559511 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.43□□□□□ -0.1
SPG11-217ENST00000559511 PHF23Q9BUL5 403 aaPredicted RBP14.43□□□□□ -0.1
SPG11-217ENST00000559511 EID1Q9Y6B2 187 aa14.43□□□□□ -0.1
SPG11-217ENST00000559511 ADAMTSL3P82987 1691 aa14.43□□□□□ -0.1
SPG11-217ENST00000559511 CEP170BQ9Y4F5 1589 aaPredicted RBP14.42□□□□□ -0.1
SPG11-217ENST00000559511 PTPRUQ92729 1446 aa14.42□□□□□ -0.1
SPG11-217ENST00000559511 TCERG1O14776 1098 aaKnown RBP14.41□□□□□ -0.1
SPG11-217ENST00000559511 THEMISQ8N1K5 641 aaPredicted RBP14.41□□□□□ -0.1
SPG11-217ENST00000559511 MAP2P11137 1827 aaKnown RBP14.41□□□□□ -0.1
SPG11-217ENST00000559511 PPIP5K1Q6PFW1 1433 aa14.41□□□□□ -0.1
SPG11-217ENST00000559511 CDC42BPGQ6DT37 1551 aa14.41□□□□□ -0.1
SPG11-217ENST00000559511 U2AF1L5P0DN76 240 aaPredicted RBP14.41□□□□□ -0.1
SPG11-217ENST00000559511 U2AF1Q01081 240 aaKnown RBP eCLIP14.41□□□□□ -0.1
SPG11-217ENST00000559511 SLC26A8Q96RN1 970 aa14.41□□□□□ -0.1
SPG11-217ENST00000559511 KDM2BQ8NHM5 1336 aa14.41□□□□□ -0.1
SPG11-217ENST00000559511 CPSF1Q10570 1443 aaKnown RBP14.4□□□□□ -0.1
SPG11-217ENST00000559511 DIP2AQ14689 1571 aa14.4□□□□□ -0.1
SPG11-217ENST00000559511 SKAP1Q86WV1 359 aa14.4□□□□□ -0.1
SPG11-217ENST00000559511 TOPAZ1Q8N9V7 1692 aa14.4□□□□□ -0.1
SPG11-217ENST00000559511 ZNF142P52746 1687 aaPredicted RBP14.39□□□□□ -0.11
SPG11-217ENST00000559511 CCDC27Q2M243 656 aa14.39□□□□□ -0.11
SPG11-217ENST00000559511 WDR63Q8IWG1 891 aa14.38□□□□□ -0.11
SPG11-217ENST00000559511 NUDT16Q96DE0 195 aaKnown RBP14.38□□□□□ -0.11
SPG11-217ENST00000559511 SETD1BQ9UPS6 1966 aaKnown RBP14.38□□□□□ -0.11
SPG11-217ENST00000559511 TBX22Q9Y458 520 aa14.38□□□□□ -0.11
SPG11-217ENST00000559511 XRN1Q8IZH2 1706 aaKnown RBP14.37□□□□□ -0.11
SPG11-217ENST00000559511 NCKAP5LQ9HCH0 1330 aa14.37□□□□□ -0.11
SPG11-217ENST00000559511 RGPD8O14715 1765 aaPredicted RBP14.36□□□□□ -0.11
SPG11-217ENST00000559511 PRR36Q9H6K5 1346 aa14.36□□□□□ -0.11
SPG11-217ENST00000559511 EDC4Q6P2E9 1401 aaKnown RBP14.36□□□□□ -0.11
SPG11-217ENST00000559511 MS4A1P11836 297 aa14.36□□□□□ -0.11
SPG11-217ENST00000559511 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.36□□□□□ -0.11
SPG11-217ENST00000559511 PLEKHF1Q96S99 279 aa14.36□□□□□ -0.11
SPG11-217ENST00000559511 CCDC61Q9Y6R9 512 aa14.36□□□□□ -0.11
SPG11-217ENST00000559511 U2SURPO15042 1029 aaKnown RBP14.35□□□□□ -0.11
SPG11-217ENST00000559511 PDE4AP27815 886 aa14.35□□□□□ -0.11
SPG11-217ENST00000559511 NCBP3Q53F19 620 aaKnown RBP14.35□□□□□ -0.11
SPG11-217ENST00000559511 AMOTL2Q9Y2J4 779 aa14.35□□□□□ -0.11
SPG11-217ENST00000559511 PNPLA6Q8IY17 1366 aa14.35□□□□□ -0.11
SPG11-217ENST00000559511 CENPQQ7L2Z9 268 aaPredicted RBP14.35□□□□□ -0.11
SPG11-217ENST00000559511 PTCH1Q13635 1447 aa14.34□□□□□ -0.11
SPG11-217ENST00000559511 NRKQ7Z2Y5 1582 aa14.34□□□□□ -0.11
SPG11-217ENST00000559511 RARSP54136 660 aaKnown RBP14.33□□□□□ -0.11
SPG11-217ENST00000559511 BACH2Q9BYV9 841 aa14.33□□□□□ -0.11
SPG11-217ENST00000559511 CHD2O14647 1828 aaKnown RBP14.33□□□□□ -0.12
SPG11-217ENST00000559511 PDE3AQ14432 1141 aa14.33□□□□□ -0.12
SPG11-217ENST00000559511 FBLN1P23142 703 aa14.32□□□□□ -0.12
SPG11-217ENST00000559511 DIAPH1O60610 1272 aaKnown RBP14.32□□□□□ -0.12
SPG11-217ENST00000559511 ANP32AP39687 249 aaKnown RBP14.32□□□□□ -0.12
SPG11-217ENST00000559511 TMPOP42166 694 aaKnown RBP14.32□□□□□ -0.12
SPG11-217ENST00000559511 ERICH6Q7L0X2 663 aa14.32□□□□□ -0.12
SPG11-217ENST00000559511 PANK1Q8TE04 598 aa14.32□□□□□ -0.12
SPG11-217ENST00000559511 CANXP27824 592 aaKnown RBP14.31□□□□□ -0.12
SPG11-217ENST00000559511 NME9Q86XW9 330 aa14.3□□□□□ -0.12
SPG11-217ENST00000559511 MYH16Q9H6N6 1097 aa14.3□□□□□ -0.12
SPG11-217ENST00000559511 TRIM35Q9UPQ4 493 aa14.3□□□□□ -0.12
SPG11-217ENST00000559511 LRRC7Q96NW7 1537 aa14.3□□□□□ -0.12
SPG11-217ENST00000559511 FRAT1Q92837 279 aaPredicted RBP14.3□□□□□ -0.12
SPG11-217ENST00000559511 MAPK8IP3Q9UPT6 1336 aa14.3□□□□□ -0.12
SPG11-217ENST00000559511 IPO9Q96P70 1041 aaKnown RBP14.29□□□□□ -0.12
SPG11-217ENST00000559511 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
SPG11-217ENST00000559511 POLKQ9UBT6 870 aa14.29□□□□□ -0.12
SPG11-217ENST00000559511 ZRANB1Q9UGI0 708 aa14.29□□□□□ -0.12
SPG11-217ENST00000559511 COG6Q9Y2V7 657 aa14.29□□□□□ -0.12
SPG11-217ENST00000559511 NOP58Q9Y2X3 529 aaKnown RBP14.29□□□□□ -0.12
SPG11-217ENST00000559511 NUTM2FA1L443 756 aa14.29□□□□□ -0.12
SPG11-217ENST00000559511 PAK3O75914 559 aaPredicted RBP14.29□□□□□ -0.12
SPG11-217ENST00000559511 TSR2Q969E8 191 aaKnown RBP14.29□□□□□ -0.12
SPG11-217ENST00000559511 BCL2L13Q9BXK5 485 aa14.29□□□□□ -0.12
SPG11-217ENST00000559511 PIK3R4Q99570 1358 aa14.28□□□□□ -0.12
SPG11-217ENST00000559511 TNNQ9UQP3 1299 aa14.28□□□□□ -0.12
SPG11-217ENST00000559511 PLEKHG3A1L390 1219 aa14.27□□□□□ -0.12
SPG11-217ENST00000559511 PPM1GO15355 546 aaPredicted RBP14.27□□□□□ -0.12
SPG11-217ENST00000559511 FMN2Q9NZ56 1722 aa14.27□□□□□ -0.12
SPG11-217ENST00000559511 NPM2Q86SE8 214 aaKnown RBP14.27□□□□□ -0.13
SPG11-217ENST00000559511 NALCNQ8IZF0 1738 aa14.27□□□□□ -0.13
SPG11-217ENST00000559511 ACEP12821 1306 aa14.27□□□□□ -0.13
SPG11-217ENST00000559511 IGHDP01880 384 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 RLBP1P12271 317 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 ANKLE2Q86XL3 938 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 CLUAP1Q96AJ1 413 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 KCNA6P17658 529 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 RIPK4P57078 832 aa14.26□□□□□ -0.13
SPG11-217ENST00000559511 AATKQ6ZMQ8 1374 aa14.25□□□□□ -0.13
SPG11-217ENST00000559511 USP6P35125 1406 aa14.25□□□□□ -0.13
SPG11-217ENST00000559511 RSPH6AQ9H0K4 717 aa14.25□□□□□ -0.13
SPG11-217ENST00000559511 EMILIN1Q9Y6C2 1016 aa14.25□□□□□ -0.13
SPG11-217ENST00000559511 FCHSD2O94868 740 aa14.24□□□□□ -0.13
SPG11-217ENST00000559511 COG3Q96JB2 828 aa14.24□□□□□ -0.13
SPG11-217ENST00000559511 CDK12Q9NYV4 1490 aaPredicted RBP14.24□□□□□ -0.13
SPG11-217ENST00000559511 EXOSC9Q06265 439 aaKnown RBP14.24□□□□□ -0.13
SPG11-217ENST00000559511 TTC21BQ7Z4L5 1316 aa14.24□□□□□ -0.13
SPG11-217ENST00000559511 PRKAR2BP31323 418 aa14.23□□□□□ -0.13
SPG11-217ENST00000559511 PNNQ9H307 717 aaKnown RBP14.23□□□□□ -0.13
SPG11-217ENST00000559511 SSH2Q76I76 1423 aa14.23□□□□□ -0.13
SPG11-217ENST00000559511 IL16Q14005 1332 aa14.23□□□□□ -0.13
SPG11-217ENST00000559511 CT47B1P0C2W7 299 aaPredicted RBP14.23□□□□□ -0.13
SPG11-217ENST00000559511 RGS3P49796 1198 aa14.23□□□□□ -0.13
SPG11-217ENST00000559511 DLG5Q8TDM6 1919 aa14.22□□□□□ -0.13
SPG11-217ENST00000559511 OVOS2A0A0J9YW53 1432 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms