RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NUTM2AQ8IVF1 878 aaPredicted RBP11.72□□□□□ -0.53
VPS13C-208ENST00000559119 ZNF511Q8NB15 262 aa11.72□□□□□ -0.53
VPS13C-208ENST00000559119 TSC1Q92574 1164 aa11.72□□□□□ -0.53
VPS13C-208ENST00000559119 LIMD1Q9UGP4 676 aa11.71□□□□□ -0.53
VPS13C-208ENST00000559119 SENP2Q9HC62 589 aa11.7□□□□□ -0.54
VPS13C-208ENST00000559119 VARSP26640 1264 aaKnown RBP11.69□□□□□ -0.54
VPS13C-208ENST00000559119 TUSC1Q2TAM9 212 aa11.68□□□□□ -0.54
VPS13C-208ENST00000559119 PLEKHG3A1L390 1219 aa11.67□□□□□ -0.54
VPS13C-208ENST00000559119 QPCTQ16769 361 aa11.67□□□□□ -0.54
VPS13C-208ENST00000559119 RSPH6AQ9H0K4 717 aa11.67□□□□□ -0.54
VPS13C-208ENST00000559119 MAP10Q9P2G4 905 aa11.67□□□□□ -0.54
VPS13C-208ENST00000559119 TLL2Q9Y6L7 1015 aa11.67□□□□□ -0.54
VPS13C-208ENST00000559119 CAPN5O15484 640 aaPredicted RBP11.65□□□□□ -0.54
VPS13C-208ENST00000559119 LILRB3O75022 631 aa11.65□□□□□ -0.54
VPS13C-208ENST00000559119 F12P00748 615 aaPredicted RBP11.65□□□□□ -0.54
VPS13C-208ENST00000559119 CLK2P49760 499 aaKnown RBP11.65□□□□□ -0.54
VPS13C-208ENST00000559119 TREML4Q6UXN2 200 aa11.65□□□□□ -0.54
VPS13C-208ENST00000559119 KIFC2Q96AC6 838 aa11.65□□□□□ -0.54
VPS13C-208ENST00000559119 BCANQ96GW7 911 aa11.65□□□□□ -0.54
VPS13C-208ENST00000559119 TRIM47Q96LD4 638 aa11.65□□□□□ -0.54
VPS13C-208ENST00000559119 PER1O15534 1290 aaPredicted RBP11.64□□□□□ -0.55
VPS13C-208ENST00000559119 SNRPBP14678 240 aaKnown RBP11.63□□□□□ -0.55
VPS13C-208ENST00000559119 HELBQ8NG08 1087 aaPredicted RBP11.63□□□□□ -0.55
VPS13C-208ENST00000559119 FAM174AQ8TBP5 190 aa11.63□□□□□ -0.55
VPS13C-208ENST00000559119 POLR3EQ9NVU0 708 aa11.63□□□□□ -0.55
VPS13C-208ENST00000559119 AGERQ15109 404 aa11.62□□□□□ -0.55
VPS13C-208ENST00000559119 MPNDQ8N594 471 aa11.62□□□□□ -0.55
VPS13C-208ENST00000559119 RTL5Q5HYW3 569 aaPredicted RBP11.61□□□□□ -0.55
VPS13C-208ENST00000559119 FOXJ1Q92949 421 aa11.61□□□□□ -0.55
VPS13C-208ENST00000559119 NNTQ13423 1086 aa11.6□□□□□ -0.55
VPS13C-208ENST00000559119 WFS1O76024 890 aa11.59□□□□□ -0.55
VPS13C-208ENST00000559119 ARMC2Q8NEN0 867 aa11.59□□□□□ -0.55
VPS13C-208ENST00000559119 BMP1P13497 986 aa11.58□□□□□ -0.56
VPS13C-208ENST00000559119 ARID5BQ14865 1188 aa11.58□□□□□ -0.56
VPS13C-208ENST00000559119 BPHLQ86WA6 291 aaPredicted RBP11.58□□□□□ -0.56
VPS13C-208ENST00000559119 ADH1CP00326 375 aa11.56□□□□□ -0.56
VPS13C-208ENST00000559119 ATP1B4Q9UN42 357 aaPredicted RBP11.56□□□□□ -0.56
VPS13C-208ENST00000559119 LCE2AQ5TA79 106 aaPredicted RBP11.55□□□□□ -0.56
VPS13C-208ENST00000559119 TRIM46Q7Z4K8 759 aa11.55□□□□□ -0.56
VPS13C-208ENST00000559119 KDM4CQ9H3R0 1056 aa11.55□□□□□ -0.56
VPS13C-208ENST00000559119 NBPF14Q5TI25 921 aa11.54□□□□□ -0.56
VPS13C-208ENST00000559119 CDK15Q96Q40 435 aa11.54□□□□□ -0.56
VPS13C-208ENST00000559119 GPBP1L1Q9HC44 474 aaPredicted RBP11.54□□□□□ -0.56
VPS13C-208ENST00000559119 WDR4P57081 412 aaKnown RBP11.53□□□□□ -0.56
VPS13C-208ENST00000559119 NFX1Q12986 1120 aaKnown RBP11.53□□□□□ -0.56
VPS13C-208ENST00000559119 SKIV2LQ15477 1246 aaKnown RBP11.53□□□□□ -0.56
VPS13C-208ENST00000559119 DDRGK1Q96HY6 314 aa11.53□□□□□ -0.56
VPS13C-208ENST00000559119 SLC24A1O60721 1099 aa11.52□□□□□ -0.57
VPS13C-208ENST00000559119 C4orf48Q5BLP8 95 aa11.52□□□□□ -0.57
VPS13C-208ENST00000559119 TERTO14746 1132 aaKnown RBP11.51□□□□□ -0.57
VPS13C-208ENST00000559119 TIMP2P16035 220 aa11.51□□□□□ -0.57
VPS13C-208ENST00000559119 CTDSPL2Q05D32 466 aa11.5□□□□□ -0.57
VPS13C-208ENST00000559119 NR5A1Q13285 461 aa11.5□□□□□ -0.57
VPS13C-208ENST00000559119 SH3D19Q5HYK7 790 aa11.5□□□□□ -0.57
VPS13C-208ENST00000559119 FAM117AQ9C073 453 aa11.5□□□□□ -0.57
VPS13C-208ENST00000559119 SCARF1Q14162 830 aa11.49□□□□□ -0.57
VPS13C-208ENST00000559119 ZFP42Q96MM3 310 aa11.49□□□□□ -0.57
VPS13C-208ENST00000559119 MAGEB6P1A0A0J9YX57 407 aa11.48□□□□□ -0.57
VPS13C-208ENST00000559119 MRPL14Q6P1L8 145 aaKnown RBP11.48□□□□□ -0.57
VPS13C-208ENST00000559119 GPKOWQ92917 476 aaPredicted RBP eCLIP11.48□□□□□ -0.57
VPS13C-208ENST00000559119 ZIC2O95409 532 aaPredicted RBP11.47□□□□□ -0.57
VPS13C-208ENST00000559119 SH3RF1Q7Z6J0 888 aa11.47□□□□□ -0.57
VPS13C-208ENST00000559119 SH3BP5LQ7L8J4 393 aa11.46□□□□□ -0.57
VPS13C-208ENST00000559119 PROCA1Q8NCQ7 364 aaPredicted RBP11.46□□□□□ -0.57
VPS13C-208ENST00000559119 C1QTNF2Q9BXJ5 285 aa11.46□□□□□ -0.57
VPS13C-208ENST00000559119 KLF16Q9BXK1 252 aaPredicted RBP11.46□□□□□ -0.57
VPS13C-208ENST00000559119 NR3C2P08235 984 aa11.45□□□□□ -0.58
VPS13C-208ENST00000559119 GRM5P41594 1212 aa11.45□□□□□ -0.58
VPS13C-208ENST00000559119 VASH1Q7L8A9 365 aaPredicted RBP11.45□□□□□ -0.58
VPS13C-208ENST00000559119 SLC16A10Q8TF71 515 aa11.45□□□□□ -0.58
VPS13C-208ENST00000559119 LRRN4Q8WUT4 740 aa11.45□□□□□ -0.58
VPS13C-208ENST00000559119 PURBQ96QR8 312 aaKnown RBP11.45□□□□□ -0.58
VPS13C-208ENST00000559119 CARD14Q9BXL6 1004 aa11.45□□□□□ -0.58
VPS13C-208ENST00000559119 NXF1Q9UBU9 619 aaKnown RBP11.45□□□□□ -0.58
VPS13C-208ENST00000559119 ITPKCQ96DU7 683 aa11.44□□□□□ -0.58
VPS13C-208ENST00000559119 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.44□□□□□ -0.58
VPS13C-208ENST00000559119 ZFAND3Q9H8U3 227 aa11.44□□□□□ -0.58
VPS13C-208ENST00000559119 FSHRP23945 695 aa11.43□□□□□ -0.58
VPS13C-208ENST00000559119 TRMT44Q8IYL2 757 aaKnown RBP11.43□□□□□ -0.58
VPS13C-208ENST00000559119 MAP4K5Q9Y4K4 846 aa11.43□□□□□ -0.58
VPS13C-208ENST00000559119 PPP2R2DQ66LE6 453 aa11.42□□□□□ -0.58
VPS13C-208ENST00000559119 WIPF1O43516 503 aa11.41□□□□□ -0.58
VPS13C-208ENST00000559119 AP1G2O75843 785 aa11.41□□□□□ -0.58
VPS13C-208ENST00000559119 PDXDC2PQ6P474 469 aa11.41□□□□□ -0.58
VPS13C-208ENST00000559119 ARHGAP9Q9BRR9 750 aa11.41□□□□□ -0.58
VPS13C-208ENST00000559119 FKBPLQ9UIM3 349 aa11.41□□□□□ -0.58
VPS13C-208ENST00000559119 UPP2O95045 317 aa11.4□□□□□ -0.58
VPS13C-208ENST00000559119 FBXO31Q5XUX0 539 aaPredicted RBP11.4□□□□□ -0.58
VPS13C-208ENST00000559119 INSM1Q01101 510 aaPredicted RBP11.39□□□□□ -0.59
VPS13C-208ENST00000559119 NR6A1Q15406 480 aa11.39□□□□□ -0.59
VPS13C-208ENST00000559119 ERFEQ4G0M1 354 aa11.39□□□□□ -0.59
VPS13C-208ENST00000559119 C6orf118Q5T5N4 469 aa11.39□□□□□ -0.59
VPS13C-208ENST00000559119 NPAS3Q8IXF0 933 aa11.39□□□□□ -0.59
VPS13C-208ENST00000559119 LCE2CQ5TA81 110 aa11.37□□□□□ -0.59
VPS13C-208ENST00000559119 ZBTB33Q86T24 672 aa11.37□□□□□ -0.59
VPS13C-208ENST00000559119 CCDC116Q8IYX3 515 aa11.37□□□□□ -0.59
VPS13C-208ENST00000559119 EMILIN1Q9Y6C2 1016 aa11.37□□□□□ -0.59
VPS13C-208ENST00000559119 ZC3H4Q9UPT8 1303 aaKnown RBP11.36□□□□□ -0.59
VPS13C-208ENST00000559119 BMP2P12643 396 aa11.36□□□□□ -0.59
VPS13C-208ENST00000559119 VEGFBP49765 207 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms