RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ZNF644Q9H582 1327 aaPredicted RBP7.35□□□□□ -1.23
LDLR-209ENST00000558528 HMGB1P09429 215 aaKnown RBP7.35□□□□□ -1.23
LDLR-209ENST00000558528 CSB-PGBD3P0DP91 1061 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 FOXD4L5Q5VV16 416 aaPredicted RBP7.35□□□□□ -1.23
LDLR-209ENST00000558528 FOXD4L4Q8WXT5 416 aaPredicted RBP7.35□□□□□ -1.23
LDLR-209ENST00000558528 GLMNQ92990 594 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 MS4A3Q96HJ5 214 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 SNRKQ9NRH2 765 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 CHIC2Q9UKJ5 165 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 BOLA1Q9Y3E2 137 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.35□□□□□ -1.23
LDLR-209ENST00000558528 ABCC5O15440 1437 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 ITSN2Q9NZM3 1697 aa7.35□□□□□ -1.23
LDLR-209ENST00000558528 CFAP74Q9C0B2 1584 aa7.34□□□□□ -1.23
LDLR-209ENST00000558528 ARHGAP5Q13017 1502 aa7.34□□□□□ -1.23
LDLR-209ENST00000558528 PHF14O94880 888 aa7.34□□□□□ -1.23
LDLR-209ENST00000558528 LRRIQ1Q96JM4 1722 aa7.34□□□□□ -1.23
LDLR-209ENST00000558528 CAMSAP2Q08AD1 1489 aa7.34□□□□□ -1.23
LDLR-209ENST00000558528 RAB3GAP2Q9H2M9 1393 aa7.33□□□□□ -1.24
LDLR-209ENST00000558528 PRIM1P49642 420 aaKnown RBP7.33□□□□□ -1.24
LDLR-209ENST00000558528 METTL3Q86U44 580 aaKnown RBP7.33□□□□□ -1.24
LDLR-209ENST00000558528 TBC1D2Q9BYX2 928 aa7.33□□□□□ -1.24
LDLR-209ENST00000558528 GDPD2Q9HCC8 539 aa7.33□□□□□ -1.24
LDLR-209ENST00000558528 RRP7BPQ9NSQ0 103 aa7.33□□□□□ -1.24
LDLR-209ENST00000558528 SPAG9O60271 1321 aaKnown RBP7.32□□□□□ -1.24
LDLR-209ENST00000558528 CCDC141Q6ZP82 1450 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 SHANK2Q9UPX8 1470 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 MAP3K7O43318 606 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 CCDC27Q2M243 656 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 DPY19L2Q6NUT2 758 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 MTMR14Q8NCE2 650 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 TRIM52Q96A61 297 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 PHOX2BQ99453 314 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 NPDC1Q9NQX5 325 aaPredicted RBP7.32□□□□□ -1.24
LDLR-209ENST00000558528 MYT1LQ9UL68 1186 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 TRIM35Q9UPQ4 493 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 RTEL1-TNFRSF6BF6WH68 1400 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 NPATQ14207 1427 aa7.32□□□□□ -1.24
LDLR-209ENST00000558528 ADGRL2O95490 1459 aa7.31□□□□□ -1.24
LDLR-209ENST00000558528 MBD5Q9P267 1494 aa7.31□□□□□ -1.24
LDLR-209ENST00000558528 NAIPQ13075 1403 aa7.31□□□□□ -1.24
LDLR-209ENST00000558528 PDCD7Q8N8D1 485 aaKnown RBP7.31□□□□□ -1.24
LDLR-209ENST00000558528 ANO8Q9HCE9 1232 aaPredicted RBP7.31□□□□□ -1.24
LDLR-209ENST00000558528 TRPC6Q9Y210 931 aa7.31□□□□□ -1.24
LDLR-209ENST00000558528 ZNF142P52746 1687 aaPredicted RBP7.31□□□□□ -1.24
LDLR-209ENST00000558528 ARHGEF5Q12774 1597 aa7.3□□□□□ -1.24
LDLR-209ENST00000558528 SCAPERQ9BY12 1400 aa7.3□□□□□ -1.24
LDLR-209ENST00000558528 ABL2P42684 1182 aa7.3□□□□□ -1.24
LDLR-209ENST00000558528 WASHC4Q2M389 1173 aa7.3□□□□□ -1.24
LDLR-209ENST00000558528 REREQ9P2R6 1566 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 AGLP35573 1532 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 IGSF3O75054 1194 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 GJA5P36382 358 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 PTCD2Q8WV60 388 aaKnown RBP7.29□□□□□ -1.24
LDLR-209ENST00000558528 L3MBTL3Q96JM7 780 aaPredicted RBP7.29□□□□□ -1.24
LDLR-209ENST00000558528 CDHR5Q9HBB8 845 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 RBM27Q9P2N5 1060 aaKnown RBP7.29□□□□□ -1.24
LDLR-209ENST00000558528 DNMT1P26358 1616 aaKnown RBP7.29□□□□□ -1.24
LDLR-209ENST00000558528 PREX2Q70Z35 1606 aa7.29□□□□□ -1.24
LDLR-209ENST00000558528 ANKRD50Q9ULJ7 1429 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 B4GALNT3Q6L9W6 998 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 SND1Q7KZF4 910 aaKnown RBP eCLIP7.28□□□□□ -1.242e-9■■□□□ 14.2
LDLR-209ENST00000558528 RIC3Q7Z5B4 369 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 AFAP1Q8N556 730 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 PXYLP1Q8TE99 480 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 OCEL1Q9H607 264 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 BMP2KQ9NSY1 1161 aaPredicted RBP7.28□□□□□ -1.24
LDLR-209ENST00000558528 DHX57Q6P158 1386 aaKnown RBP7.28□□□□□ -1.24
LDLR-209ENST00000558528 KIF15Q9NS87 1388 aa7.28□□□□□ -1.24
LDLR-209ENST00000558528 CNTLNQ9NXG0 1405 aa7.27□□□□□ -1.24
LDLR-209ENST00000558528 IER5LQ5T953 404 aa7.27□□□□□ -1.25
LDLR-209ENST00000558528 SLAIN1Q8ND83 568 aa7.27□□□□□ -1.25
LDLR-209ENST00000558528 MPHOSPH9Q99550 1183 aa7.27□□□□□ -1.25
LDLR-209ENST00000558528 ZNF518AQ6AHZ1 1483 aa7.27□□□□□ -1.25
LDLR-209ENST00000558528 VWDEQ8N2E2 1590 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 CEP170BQ9Y4F5 1589 aaPredicted RBP7.26□□□□□ -1.25
LDLR-209ENST00000558528 SPTLC1O15269 473 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 IFFO2Q5TF58 517 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 TYW1BQ6NUM6 668 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 NDUFB9Q9Y6M9 179 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 MYO5CQ9NQX4 1742 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 MYO3AQ8NEV4 1616 aa7.26□□□□□ -1.25
LDLR-209ENST00000558528 MROH2AA6NES4 1674 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 SAMD9LQ8IVG5 1584 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 NEURL4Q96JN8 1562 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 MAST1Q9Y2H9 1570 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 CDC42BPAQ5VT25 1732 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 POM121CA8CG34 1229 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 ZNF428Q96B54 188 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 LIMD1Q9UGP4 676 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 TBC1D2BQ9UPU7 963 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 ADGRG1Q9Y653 693 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 RNF17Q9BXT8 1623 aaKnown RBP7.25□□□□□ -1.25
LDLR-209ENST00000558528 ABCC1P33527 1531 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 SYCP2Q9BX26 1530 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 ERBINQ96RT1 1412 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 DIP2CQ9Y2E4 1556 aa7.25□□□□□ -1.25
LDLR-209ENST00000558528 NUP155O75694 1391 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 KANK1Q14678 1352 aa7.24□□□□□ -1.25
LDLR-209ENST00000558528 DHX29Q7Z478 1369 aaKnown RBP7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms