RNA–Protein interactions for RNA: ENST00000558400.1

TPM1-213, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-213ENST00000558400 HAP1P54257 671 aaPredicted RBP11.96□□□□□ -0.49
TPM1-213ENST00000558400 PUS7Q96PZ0 661 aaKnown RBP11.96□□□□□ -0.49
TPM1-213ENST00000558400 ZNF692Q9BU19 519 aaPredicted RBP11.96□□□□□ -0.49
TPM1-213ENST00000558400 CABP2Q9NPB3 220 aa11.96□□□□□ -0.49
TPM1-213ENST00000558400 ARHGEF28Q8N1W1 1705 aaKnown RBP11.96□□□□□ -0.49
TPM1-213ENST00000558400 KIF1AQ12756 1690 aa11.96□□□□□ -0.5
TPM1-213ENST00000558400 TRPM1Q7Z4N2 1603 aa11.96□□□□□ -0.5
TPM1-213ENST00000558400 ACEP12821 1306 aa11.95□□□□□ -0.5
TPM1-213ENST00000558400 PAK3O75914 559 aaPredicted RBP11.95□□□□□ -0.5
TPM1-213ENST00000558400 CCDC125Q86Z20 511 aa11.95□□□□□ -0.5
TPM1-213ENST00000558400 CABP1Q9NZU7 370 aa11.95□□□□□ -0.5
TPM1-213ENST00000558400 RALGAPBQ86X10 1494 aa11.95□□□□□ -0.5
TPM1-213ENST00000558400 MARF1Q9Y4F3 1742 aaKnown RBP11.94□□□□□ -0.5
TPM1-213ENST00000558400 SBNO2Q9Y2G9 1366 aa11.94□□□□□ -0.5
TPM1-213ENST00000558400 POLR3AO14802 1390 aaPredicted RBP11.93□□□□□ -0.5
TPM1-213ENST00000558400 BRD4O60885 1362 aaPredicted RBP11.93□□□□□ -0.5
TPM1-213ENST00000558400 FNBP4Q8N3X1 1017 aaPredicted RBP11.93□□□□□ -0.5
TPM1-213ENST00000558400 ATRNO75882 1429 aa11.93□□□□□ -0.5
TPM1-213ENST00000558400 TNS3Q68CZ2 1445 aa11.93□□□□□ -0.5
TPM1-213ENST00000558400 ATP7BP35670 1465 aa11.92□□□□□ -0.5
TPM1-213ENST00000558400 ST20-MTHFSA0A0A6YYL1 179 aa11.92□□□□□ -0.5
TPM1-213ENST00000558400 COL22A1Q8NFW1 1626 aaPredicted RBP11.91□□□□□ -0.5
TPM1-213ENST00000558400 ABTB2Q8N961 1025 aa11.91□□□□□ -0.5
TPM1-213ENST00000558400 USP21Q9UK80 565 aa11.91□□□□□ -0.5
TPM1-213ENST00000558400 TRPC5Q9UL62 973 aaPredicted RBP11.91□□□□□ -0.5
TPM1-213ENST00000558400 PPIP5K1Q6PFW1 1433 aa11.91□□□□□ -0.5
TPM1-213ENST00000558400 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.91□□□□□ -0.5
TPM1-213ENST00000558400 BRWD3Q6RI45 1802 aa11.9□□□□□ -0.5
TPM1-213ENST00000558400 USP32Q8NFA0 1604 aa11.9□□□□□ -0.5
TPM1-213ENST00000558400 RGPD8O14715 1765 aaPredicted RBP11.9□□□□□ -0.5
TPM1-213ENST00000558400 CDCA8Q53HL2 280 aa11.9□□□□□ -0.5
TPM1-213ENST00000558400 NLRP13Q86W25 1043 aa11.9□□□□□ -0.5
TPM1-213ENST00000558400 CABLES1Q8TDN4 633 aa11.9□□□□□ -0.5
TPM1-213ENST00000558400 BLMP54132 1417 aaPredicted RBP11.89□□□□□ -0.51
TPM1-213ENST00000558400 KCNA4P22459 653 aa11.89□□□□□ -0.51
TPM1-213ENST00000558400 TMF1P82094 1093 aa11.89□□□□□ -0.51
TPM1-213ENST00000558400 TESK2Q96S53 571 aa11.88□□□□□ -0.51
TPM1-213ENST00000558400 HDGFL2Q7Z4V5 671 aaPredicted RBP11.87□□□□□ -0.51
TPM1-213ENST00000558400 UNC5CLQ8IV45 518 aa11.87□□□□□ -0.51
TPM1-213ENST00000558400 TMC1Q8TDI8 760 aa11.87□□□□□ -0.51
TPM1-213ENST00000558400 TERF2IPQ9NYB0 399 aa11.87□□□□□ -0.51
TPM1-213ENST00000558400 ITSN1Q15811 1721 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 FAM83GA6ND36 823 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 PLEKHG5O94827 1062 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 NLRP6P59044 892 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 USP47Q96K76 1375 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 QRICH2Q9H0J4 1663 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 TTC21AQ8NDW8 1320 aa11.86□□□□□ -0.51
TPM1-213ENST00000558400 BCL9LQ86UU0 1499 aa11.85□□□□□ -0.51
TPM1-213ENST00000558400 SLC12A5Q9H2X9 1139 aa11.85□□□□□ -0.51
TPM1-213ENST00000558400 NINLQ9Y2I6 1382 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 GCP02774 474 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 EIF4G2P78344 907 aaKnown RBP eCLIP11.84□□□□□ -0.51
TPM1-213ENST00000558400 NUTM2GQ5VZR2 741 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 GJD4Q96KN9 370 aaPredicted RBP11.84□□□□□ -0.51
TPM1-213ENST00000558400 PRDM11Q9NQV5 511 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 USP6P35125 1406 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 TTC21BQ7Z4L5 1316 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 GLI3P10071 1580 aa11.84□□□□□ -0.51
TPM1-213ENST00000558400 KTN1Q86UP2 1357 aaKnown RBP11.83□□□□□ -0.52
TPM1-213ENST00000558400 C1QBPQ07021 282 aaKnown RBP11.83□□□□□ -0.52
TPM1-213ENST00000558400 CPSF1Q10570 1443 aaKnown RBP11.83□□□□□ -0.52
TPM1-213ENST00000558400 VPS72Q15906 364 aa11.82□□□□□ -0.52
TPM1-213ENST00000558400 KCNH5Q8NCM2 988 aa11.82□□□□□ -0.52
TPM1-213ENST00000558400 BTG4Q9NY30 223 aa11.82□□□□□ -0.52
TPM1-213ENST00000558400 SSH2Q76I76 1423 aa11.81□□□□□ -0.52
TPM1-213ENST00000558400 ZC3H6P61129 1189 aaKnown RBP11.81□□□□□ -0.52
TPM1-213ENST00000558400 DEFB132Q7Z7B7 95 aa11.81□□□□□ -0.52
TPM1-213ENST00000558400 USP19O94966 1318 aa11.81□□□□□ -0.52
TPM1-213ENST00000558400 SLIT2O94813 1529 aa11.81□□□□□ -0.52
TPM1-213ENST00000558400 TRPM3Q9HCF6 1732 aaPredicted RBP11.8□□□□□ -0.52
TPM1-213ENST00000558400 EVA1CP58658 441 aa11.8□□□□□ -0.52
TPM1-213ENST00000558400 CCDC9Q9Y3X0 531 aaKnown RBP11.8□□□□□ -0.52
TPM1-213ENST00000558400 TOPAZ1Q8N9V7 1692 aa11.8□□□□□ -0.52
TPM1-213ENST00000558400 ALS2Q96Q42 1657 aa11.79□□□□□ -0.52
TPM1-213ENST00000558400 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.79□□□□□ -0.52
TPM1-213ENST00000558400 CPDO75976 1380 aa11.79□□□□□ -0.52
TPM1-213ENST00000558400 KIAA0232Q92628 1395 aa11.79□□□□□ -0.52
TPM1-213ENST00000558400 ONECUT3O60422 494 aaPredicted RBP11.78□□□□□ -0.52
TPM1-213ENST00000558400 SF3B2Q13435 895 aaKnown RBP11.78□□□□□ -0.52
TPM1-213ENST00000558400 PSDA5PKW4 1024 aaPredicted RBP11.77□□□□□ -0.53
TPM1-213ENST00000558400 HSPA5P11021 654 aaKnown RBP11.77□□□□□ -0.53
TPM1-213ENST00000558400 CHRNA2Q15822 529 aa11.77□□□□□ -0.53
TPM1-213ENST00000558400 RGPD1P0DJD0 1748 aa11.77□□□□□ -0.53
TPM1-213ENST00000558400 EDC4Q6P2E9 1401 aaKnown RBP11.77□□□□□ -0.53
TPM1-213ENST00000558400 USP31Q70CQ4 1352 aa11.76□□□□□ -0.53
TPM1-213ENST00000558400 YY1P25490 414 aa11.75□□□□□ -0.53
TPM1-213ENST00000558400 ARHGEF25Q86VW2 580 aa11.75□□□□□ -0.53
TPM1-213ENST00000558400 A0A1W2PP64 1363 aa11.75□□□□□ -0.53
TPM1-213ENST00000558400 AATKQ6ZMQ8 1374 aa11.75□□□□□ -0.53
TPM1-213ENST00000558400 ANKRD36BQ8N2N9 1353 aa11.75□□□□□ -0.53
TPM1-213ENST00000558400 NME9Q86XW9 330 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 COG3Q96JB2 828 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 STRN4Q9NRL3 753 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 SPATA31A5Q5VU36 1347 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 SPATA31A7Q8IWB4 1347 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 CD163L1Q9NR16 1453 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 PLCH1Q4KWH8 1693 aa11.74□□□□□ -0.53
TPM1-213ENST00000558400 SEPT12Q8IYM1 358 aa11.73□□□□□ -0.53
TPM1-213ENST00000558400 NWD2Q9ULI1 1742 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms