RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TRMT2AQ8IZ69 625 aaKnown RBP9.49□□□□□ -0.89
VPS13C-206ENST00000558338 IDI1Q13907 227 aa9.49□□□□□ -0.89
VPS13C-206ENST00000558338 DCBLD2Q96PD2 775 aa9.49□□□□□ -0.89
VPS13C-206ENST00000558338 CRBNQ96SW2 442 aa9.49□□□□□ -0.89
VPS13C-206ENST00000558338 MED14O60244 1454 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 IQSEC2Q5JU85 1478 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 TMEM132EQ6IEE7 984 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 SPATA31D1Q6ZQQ2 1576 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 DNAJC5Q9H3Z4 198 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 PTPRMP28827 1452 aa9.48□□□□□ -0.89
VPS13C-206ENST00000558338 APAF1O14727 1248 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 POTEGQ6S5H5 508 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 DLC1Q96QB1 1528 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 YTHDC2Q9H6S0 1430 aaKnown RBP9.47□□□□□ -0.89
VPS13C-206ENST00000558338 CENPQQ7L2Z9 268 aaPredicted RBP9.47□□□□□ -0.89
VPS13C-206ENST00000558338 CCDC146Q8IYE0 955 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 RUNDC1Q96C34 613 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 SLC12A5Q9H2X9 1139 aa9.47□□□□□ -0.89
VPS13C-206ENST00000558338 ABCC11Q96J66 1382 aa9.46□□□□□ -0.89
VPS13C-206ENST00000558338 ARHGEF40Q8TER5 1519 aa9.46□□□□□ -0.9
VPS13C-206ENST00000558338 ALKQ9UM73 1620 aa9.46□□□□□ -0.9
VPS13C-206ENST00000558338 FARP1Q9Y4F1 1045 aaPredicted RBP9.46□□□□□ -0.9
VPS13C-206ENST00000558338 PLIN1O60240 522 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 FAM69CQ0P6D2 419 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 NOP58Q9Y2X3 529 aaKnown RBP9.45□□□□□ -0.9
VPS13C-206ENST00000558338 ADGRB2O60241 1585 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 TSPOAP1O95153 1857 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 CCDC27Q2M243 656 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 CYB5RLQ6IPT4 315 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 TERF2IPQ9NYB0 399 aa9.45□□□□□ -0.9
VPS13C-206ENST00000558338 KIF20BQ96Q89 1820 aa9.44□□□□□ -0.9
VPS13C-206ENST00000558338 IFNLR1Q8IU57 520 aaPredicted RBP9.44□□□□□ -0.9
VPS13C-206ENST00000558338 A0A1W2PP64 1363 aa9.43□□□□□ -0.9
VPS13C-206ENST00000558338 VASPP50552 380 aaPredicted RBP9.43□□□□□ -0.9
VPS13C-206ENST00000558338 AAMPQ13685 434 aa9.43□□□□□ -0.9
VPS13C-206ENST00000558338 WDR63Q8IWG1 891 aa9.43□□□□□ -0.9
VPS13C-206ENST00000558338 IPO9Q96P70 1041 aaKnown RBP9.43□□□□□ -0.9
VPS13C-206ENST00000558338 KDM2BQ8NHM5 1336 aa9.43□□□□□ -0.9
VPS13C-206ENST00000558338 SRPK2P78362 688 aaKnown RBP9.42□□□□□ -0.9
VPS13C-206ENST00000558338 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 WWC1Q8IX03 1113 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 STAG3Q9UJ98 1225 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 SETD1AO15047 1707 aaKnown RBP9.42□□□□□ -0.9
VPS13C-206ENST00000558338 A2ML1A8K2U0 1454 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 PDE4AP27815 886 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 MTHFSP49914 203 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 NUTM2DQ5VT03 806 aaPredicted RBP9.42□□□□□ -0.9
VPS13C-206ENST00000558338 HDGFL2Q7Z4V5 671 aaPredicted RBP9.42□□□□□ -0.9
VPS13C-206ENST00000558338 CABP2Q9NPB3 220 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 POGKQ9P215 609 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 ATP7BP35670 1465 aa9.42□□□□□ -0.9
VPS13C-206ENST00000558338 KNDC1Q76NI1 1749 aa9.41□□□□□ -0.9
VPS13C-206ENST00000558338 BACH2Q9BYV9 841 aa9.41□□□□□ -0.9
VPS13C-206ENST00000558338 RIMS2Q9UQ26 1411 aa9.41□□□□□ -0.9
VPS13C-206ENST00000558338 C20orf194Q5TEA3 1177 aa9.4□□□□□ -0.9
VPS13C-206ENST00000558338 SPRYD3Q8NCJ5 442 aa9.4□□□□□ -0.9
VPS13C-206ENST00000558338 OTUD5Q96G74 571 aa9.4□□□□□ -0.9
VPS13C-206ENST00000558338 PRAM1Q96QH2 718 aa9.4□□□□□ -0.9
VPS13C-206ENST00000558338 MYH16Q9H6N6 1097 aa9.4□□□□□ -0.9
VPS13C-206ENST00000558338 COL3A1P02461 1466 aaPredicted RBP9.4□□□□□ -0.9
VPS13C-206ENST00000558338 CT47B1P0C2W7 299 aaPredicted RBP9.4□□□□□ -0.91
VPS13C-206ENST00000558338 TNNT2P45379 298 aaPredicted RBP9.4□□□□□ -0.91
VPS13C-206ENST00000558338 TCP11L2Q8N4U5 519 aa9.4□□□□□ -0.91
VPS13C-206ENST00000558338 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.4□□□□□ -0.91
VPS13C-206ENST00000558338 PNNQ9H307 717 aaKnown RBP9.4□□□□□ -0.91
VPS13C-206ENST00000558338 STK26Q9P289 416 aa9.4□□□□□ -0.91
VPS13C-206ENST00000558338 ZBTB47Q9UFB7 747 aaPredicted RBP9.4□□□□□ -0.91
VPS13C-206ENST00000558338 CDC42BPGQ6DT37 1551 aa9.4□□□□□ -0.91
VPS13C-206ENST00000558338 CD163L1Q9NR16 1453 aa9.39□□□□□ -0.91
VPS13C-206ENST00000558338 CANXP27824 592 aaKnown RBP9.39□□□□□ -0.91
VPS13C-206ENST00000558338 NLRP1Q9C000 1473 aa9.39□□□□□ -0.91
VPS13C-206ENST00000558338 DDRGK1Q96HY6 314 aa9.38□□□□□ -0.91
VPS13C-206ENST00000558338 MINK1Q8N4C8 1332 aaPredicted RBP9.38□□□□□ -0.91
VPS13C-206ENST00000558338 KIF13AQ9H1H9 1805 aa9.38□□□□□ -0.91
VPS13C-206ENST00000558338 SAFB2Q14151 953 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS13C-206ENST00000558338 FBXO31Q5XUX0 539 aaPredicted RBP9.38□□□□□ -0.91
VPS13C-206ENST00000558338 ZNF579Q8NAF0 562 aaKnown RBP9.38□□□□□ -0.91
VPS13C-206ENST00000558338 U2AF1L5P0DN76 240 aaPredicted RBP9.37□□□□□ -0.91
VPS13C-206ENST00000558338 HDGFP51858 240 aaKnown RBP9.37□□□□□ -0.91
VPS13C-206ENST00000558338 U2AF1Q01081 240 aaKnown RBP eCLIP9.37□□□□□ -0.91
VPS13C-206ENST00000558338 NRXN3Q9Y4C0 1643 aa9.37□□□□□ -0.91
VPS13C-206ENST00000558338 VIRMAQ69YN4 1812 aaKnown RBP9.37□□□□□ -0.91
VPS13C-206ENST00000558338 BCAR3O75815 825 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 CPS1P31327 1500 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 CDK19Q9BWU1 502 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 ESF1Q9H501 851 aaKnown RBP9.36□□□□□ -0.91
VPS13C-206ENST00000558338 MAPK8IP3Q9UPT6 1336 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 FAM135BQ49AJ0 1406 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 PNPLA6Q8IY17 1366 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 IL16Q14005 1332 aa9.36□□□□□ -0.91
VPS13C-206ENST00000558338 TECPR2O15040 1411 aa9.35□□□□□ -0.91
VPS13C-206ENST00000558338 ZMYM3Q14202 1370 aa9.35□□□□□ -0.91
VPS13C-206ENST00000558338 RARSP54136 660 aaKnown RBP9.35□□□□□ -0.91
VPS13C-206ENST00000558338 FAM161AQ3B820 660 aa9.35□□□□□ -0.91
VPS13C-206ENST00000558338 CLUAP1Q96AJ1 413 aa9.35□□□□□ -0.91
VPS13C-206ENST00000558338 EDC4Q6P2E9 1401 aaKnown RBP9.35□□□□□ -0.91
VPS13C-206ENST00000558338 FYB1O15117 783 aa9.34□□□□□ -0.91
VPS13C-206ENST00000558338 NEUROD2Q15784 382 aa9.34□□□□□ -0.91
VPS13C-206ENST00000558338 PMFBP1Q8TBY8 1022 aa9.34□□□□□ -0.91
VPS13C-206ENST00000558338 SIRT1Q96EB6 747 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms