RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 FSD2A1L4K1 749 aa13.94□□□□□ -0.18
USP3-206ENST00000558157 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.94□□□□□ -0.18
USP3-206ENST00000558157 PIK3R4Q99570 1358 aa13.94□□□□□ -0.18
USP3-206ENST00000558157 SIRT1Q96EB6 747 aa13.94□□□□□ -0.18
USP3-206ENST00000558157 AMOTL2Q9Y2J4 779 aa13.94□□□□□ -0.18
USP3-206ENST00000558157 GOLGA6L3A6NEY3 463 aa13.93□□□□□ -0.18
USP3-206ENST00000558157 PANK3Q9H999 370 aa13.93□□□□□ -0.18
USP3-206ENST00000558157 HSPA2P54652 639 aa13.93□□□□□ -0.18
USP3-206ENST00000558157 CABP2Q9NPB3 220 aa13.93□□□□□ -0.18
USP3-206ENST00000558157 ISY1Q9ULR0 285 aaKnown RBP13.93□□□□□ -0.18
USP3-206ENST00000558157 ADGRB2O60241 1585 aa13.93□□□□□ -0.18
USP3-206ENST00000558157 BLMP54132 1417 aaPredicted RBP13.92□□□□□ -0.18
USP3-206ENST00000558157 TPM2P07951 284 aa13.92□□□□□ -0.18
USP3-206ENST00000558157 VIRMAQ69YN4 1812 aaKnown RBP13.92□□□□□ -0.18
USP3-206ENST00000558157 PDCL3Q9H2J4 239 aa13.91□□□□□ -0.18
USP3-206ENST00000558157 PARD3Q8TEW0 1356 aa13.91□□□□□ -0.18
USP3-206ENST00000558157 SRPK2P78362 688 aaKnown RBP13.91□□□□□ -0.18
USP3-206ENST00000558157 XRCC6P12956 609 aaKnown RBP eCLIP13.9□□□□□ -0.18
USP3-206ENST00000558157 CNGB1Q14028 1251 aaPredicted RBP13.9□□□□□ -0.18
USP3-206ENST00000558157 PUS7Q96PZ0 661 aaKnown RBP13.9□□□□□ -0.18
USP3-206ENST00000558157 NWD1Q149M9 1564 aa13.9□□□□□ -0.18
USP3-206ENST00000558157 PER1O15534 1290 aaPredicted RBP13.9□□□□□ -0.18
USP3-206ENST00000558157 CDK19Q9BWU1 502 aa13.9□□□□□ -0.18
USP3-206ENST00000558157 KCNA6P17658 529 aa13.89□□□□□ -0.19
USP3-206ENST00000558157 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.89□□□□□ -0.19
USP3-206ENST00000558157 ATAD2Q6PL18 1390 aa13.89□□□□□ -0.19
USP3-206ENST00000558157 STRCQ7RTU9 1775 aa13.88□□□□□ -0.19
USP3-206ENST00000558157 PLIN1O60240 522 aa13.88□□□□□ -0.19
USP3-206ENST00000558157 MRE11P49959 708 aa13.88□□□□□ -0.19
USP3-206ENST00000558157 CALD1Q05682 793 aaKnown RBP13.88□□□□□ -0.19
USP3-206ENST00000558157 SLC12A5Q9H2X9 1139 aa13.88□□□□□ -0.19
USP3-206ENST00000558157 WASLO00401 505 aaPredicted RBP13.87□□□□□ -0.19
USP3-206ENST00000558157 SKAP1Q86WV1 359 aa13.87□□□□□ -0.19
USP3-206ENST00000558157 ANTXR1Q9H6X2 564 aa13.87□□□□□ -0.19
USP3-206ENST00000558157 NALCNQ8IZF0 1738 aa13.87□□□□□ -0.19
USP3-206ENST00000558157 CDCA7LQ96GN5 454 aa13.86□□□□□ -0.19
USP3-206ENST00000558157 NINLQ9Y2I6 1382 aa13.86□□□□□ -0.19
USP3-206ENST00000558157 USP19O94966 1318 aa13.85□□□□□ -0.19
USP3-206ENST00000558157 ATP7BP35670 1465 aa13.85□□□□□ -0.19
USP3-206ENST00000558157 TOPAZ1Q8N9V7 1692 aa13.85□□□□□ -0.19
USP3-206ENST00000558157 ANKRD36BQ8N2N9 1353 aa13.85□□□□□ -0.19
USP3-206ENST00000558157 NSD3Q9BZ95 1437 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 KNSTRNQ9Y448 316 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 CD163L1Q9NR16 1453 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 ESPNB1AK53 854 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 CARD14Q9BXL6 1004 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 STRCP1A6NGW2 1772 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 USP32Q8NFA0 1604 aa13.84□□□□□ -0.19
USP3-206ENST00000558157 SENP3-EIF4A1A0A087X0R7 540 aa13.83□□□□□ -0.19
USP3-206ENST00000558157 CC2D1BQ5T0F9 858 aaKnown RBP13.83□□□□□ -0.19
USP3-206ENST00000558157 MAPK8IP3Q9UPT6 1336 aa13.83□□□□□ -0.2
USP3-206ENST00000558157 A0A1W2PP64 1363 aa13.83□□□□□ -0.2
USP3-206ENST00000558157 AMER1Q5JTC6 1135 aaPredicted RBP13.82□□□□□ -0.2
USP3-206ENST00000558157 PPIP5K1Q6PFW1 1433 aa13.82□□□□□ -0.2
USP3-206ENST00000558157 FMN2Q9NZ56 1722 aa13.82□□□□□ -0.2
USP3-206ENST00000558157 MYH16Q9H6N6 1097 aa13.82□□□□□ -0.2
USP3-206ENST00000558157 PRR36Q9H6K5 1346 aa13.82□□□□□ -0.2
USP3-206ENST00000558157 NKTRP30414 1462 aaKnown RBP13.82□□□□□ -0.2
USP3-206ENST00000558157 C20orf194Q5TEA3 1177 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 CDC42BPGQ6DT37 1551 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 ITSN1Q15811 1721 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 TERF1P54274 439 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 NUDT16Q96DE0 195 aaKnown RBP13.81□□□□□ -0.2
USP3-206ENST00000558157 RBM33Q96EV2 1170 aaKnown RBP13.81□□□□□ -0.2
USP3-206ENST00000558157 MAP7D2Q96T17 732 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 CABP1Q9NZU7 370 aa13.81□□□□□ -0.2
USP3-206ENST00000558157 ADGRL3Q9HAR2 1447 aa13.8□□□□□ -0.2
USP3-206ENST00000558157 NPC1L1Q9UHC9 1359 aa13.8□□□□□ -0.2
USP3-206ENST00000558157 MCM4P33991 863 aa13.8□□□□□ -0.2
USP3-206ENST00000558157 RGPD8O14715 1765 aaPredicted RBP13.8□□□□□ -0.2
USP3-206ENST00000558157 AKAP12Q02952 1782 aa13.8□□□□□ -0.2
USP3-206ENST00000558157 NUTM2FA1L443 756 aa13.79□□□□□ -0.2
USP3-206ENST00000558157 RGS3P49796 1198 aa13.79□□□□□ -0.2
USP3-206ENST00000558157 UPF2Q9HAU5 1272 aaKnown RBP13.79□□□□□ -0.2
USP3-206ENST00000558157 MON2Q7Z3U7 1717 aa13.78□□□□□ -0.2
USP3-206ENST00000558157 TERF2IPQ9NYB0 399 aa13.78□□□□□ -0.2
USP3-206ENST00000558157 PANK2Q9BZ23 570 aa13.78□□□□□ -0.2
USP3-206ENST00000558157 SLKQ9H2G2 1235 aaPredicted RBP13.78□□□□□ -0.2
USP3-206ENST00000558157 KIF20BQ96Q89 1820 aa13.77□□□□□ -0.2
USP3-206ENST00000558157 HDGFL2Q7Z4V5 671 aaPredicted RBP13.77□□□□□ -0.21
USP3-206ENST00000558157 CCDC61Q9Y6R9 512 aa13.77□□□□□ -0.21
USP3-206ENST00000558157 TRIM44Q96DX7 344 aaPredicted RBP13.76□□□□□ -0.21
USP3-206ENST00000558157 GRPEL1Q9HAV7 217 aa13.76□□□□□ -0.21
USP3-206ENST00000558157 CPSF1Q10570 1443 aaKnown RBP13.76□□□□□ -0.21
USP3-206ENST00000558157 ANKARQ7Z5J8 1434 aa13.76□□□□□ -0.21
USP3-206ENST00000558157 ANKRD26Q9UPS8 1709 aa13.76□□□□□ -0.21
USP3-206ENST00000558157 DDX11L8A8MPP1 907 aa13.75□□□□□ -0.21
USP3-206ENST00000558157 DUSP27Q5VZP5 1158 aa13.75□□□□□ -0.21
USP3-206ENST00000558157 PROSER2Q86WR7 435 aaPredicted RBP13.75□□□□□ -0.21
USP3-206ENST00000558157 CGNL1Q0VF96 1302 aa13.75□□□□□ -0.21
USP3-206ENST00000558157 PRDM4Q9UKN5 801 aa13.75□□□□□ -0.21
USP3-206ENST00000558157 NRKQ7Z2Y5 1582 aa13.75□□□□□ -0.21
USP3-206ENST00000558157 TRAK2O60296 914 aa13.74□□□□□ -0.21
USP3-206ENST00000558157 PLEKHG5O94827 1062 aa13.74□□□□□ -0.21
USP3-206ENST00000558157 C14orf37Q86TY3 774 aa13.74□□□□□ -0.21
USP3-206ENST00000558157 TBC1D32Q96NH3 1257 aa13.74□□□□□ -0.21
USP3-206ENST00000558157 CHMP5Q9NZZ3 219 aa13.74□□□□□ -0.21
USP3-206ENST00000558157 NSD2O96028 1365 aa13.73□□□□□ -0.21
USP3-206ENST00000558157 XIRP1Q702N8 1843 aaKnown RBP13.73□□□□□ -0.21
USP3-206ENST00000558157 AAMPQ13685 434 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms