RNA–Protein interactions for RNA: ENST00000557470.5

VPS33B-207, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 5

Gene VPS33B, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-207ENST00000557470 LAMC1P11047 1609 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 C7P10643 843 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 ITGAEP38570 1179 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 EP400Q96L91 3159 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 ATAD2Q6PL18 1390 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 PTCH1Q13635 1447 aa8.96□□□□□ -0.98
VPS33B-207ENST00000557470 CLTCL1P53675 1640 aa8.95□□□□□ -0.98
VPS33B-207ENST00000557470 ORAI2Q96SN7 254 aa8.95□□□□□ -0.98
VPS33B-207ENST00000557470 USP21Q9UK80 565 aa8.95□□□□□ -0.98
VPS33B-207ENST00000557470 TIMELESSQ9UNS1 1208 aa8.95□□□□□ -0.98
VPS33B-207ENST00000557470 SOS2Q07890 1332 aaPredicted RBP8.95□□□□□ -0.98
VPS33B-207ENST00000557470 ROBO2Q9HCK4 1378 aa8.95□□□□□ -0.98
VPS33B-207ENST00000557470 POTEFA5A3E0 1075 aa8.94□□□□□ -0.98
VPS33B-207ENST00000557470 POTEJP0CG39 1038 aa8.94□□□□□ -0.98
VPS33B-207ENST00000557470 TRIM35Q9UPQ4 493 aa8.94□□□□□ -0.98
VPS33B-207ENST00000557470 ATRNO75882 1429 aa8.94□□□□□ -0.98
VPS33B-207ENST00000557470 FNBP4Q8N3X1 1017 aaPredicted RBP8.93□□□□□ -0.98
VPS33B-207ENST00000557470 OTUD5Q96G74 571 aa8.93□□□□□ -0.98
VPS33B-207ENST00000557470 TMEM106CQ9BVX2 250 aa8.93□□□□□ -0.98
VPS33B-207ENST00000557470 TRPC5Q9UL62 973 aaPredicted RBP8.93□□□□□ -0.98
VPS33B-207ENST00000557470 CIZ1Q9ULV3 898 aaPredicted RBP8.93□□□□□ -0.98
VPS33B-207ENST00000557470 COL22A1Q8NFW1 1626 aaPredicted RBP8.92□□□□□ -0.98
VPS33B-207ENST00000557470 MYOM2P54296 1465 aa8.92□□□□□ -0.98
VPS33B-207ENST00000557470 PRAG1Q86YV5 1406 aa8.92□□□□□ -0.98
VPS33B-207ENST00000557470 TULP1O00294 542 aaPredicted RBP8.91□□□□□ -0.98
VPS33B-207ENST00000557470 BCL9LQ86UU0 1499 aa8.9□□□□□ -0.98
VPS33B-207ENST00000557470 COLQQ9Y215 455 aaPredicted RBP8.9□□□□□ -0.98
VPS33B-207ENST00000557470 PXDNQ92626 1479 aa8.89□□□□□ -0.99
VPS33B-207ENST00000557470 HFM1A2PYH4 1435 aa8.89□□□□□ -0.99
VPS33B-207ENST00000557470 KIF1BO60333 1816 aa8.89□□□□□ -0.99
VPS33B-207ENST00000557470 VGFO15240 615 aaPredicted RBP8.89□□□□□ -0.99
VPS33B-207ENST00000557470 CHRM1P11229 460 aaPredicted RBP8.89□□□□□ -0.99
VPS33B-207ENST00000557470 XPCQ01831 940 aaPredicted RBP8.89□□□□□ -0.99
VPS33B-207ENST00000557470 NPHP3Q7Z494 1330 aa8.88□□□□□ -0.99
VPS33B-207ENST00000557470 CDC42BPGQ6DT37 1551 aa8.88□□□□□ -0.99
VPS33B-207ENST00000557470 ESCO1Q5FWF5 840 aa8.88□□□□□ -0.99
VPS33B-207ENST00000557470 PPARGC1BQ86YN6 1023 aaKnown RBP8.88□□□□□ -0.99
VPS33B-207ENST00000557470 FOXO3O43524 673 aa8.87□□□□□ -0.99
VPS33B-207ENST00000557470 CCDC125Q86Z20 511 aa8.87□□□□□ -0.99
VPS33B-207ENST00000557470 GJD4Q96KN9 370 aaPredicted RBP8.87□□□□□ -0.99
VPS33B-207ENST00000557470 NAIPQ13075 1403 aa8.87□□□□□ -0.99
VPS33B-207ENST00000557470 RPGRIP1LQ68CZ1 1315 aa8.86□□□□□ -0.99
VPS33B-207ENST00000557470 MARF1Q9Y4F3 1742 aaKnown RBP8.86□□□□□ -0.99
VPS33B-207ENST00000557470 PPLO60437 1756 aa8.86□□□□□ -0.99
VPS33B-207ENST00000557470 GLI3P10071 1580 aa8.86□□□□□ -0.99
VPS33B-207ENST00000557470 RALGAPBQ86X10 1494 aa8.85□□□□□ -0.99
VPS33B-207ENST00000557470 ERICH6Q7L0X2 663 aa8.85□□□□□ -0.99
VPS33B-207ENST00000557470 ZNF467Q7Z7K2 595 aaPredicted RBP8.85□□□□□ -0.99
VPS33B-207ENST00000557470 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.85□□□□□ -0.99
VPS33B-207ENST00000557470 SLIT2O94813 1529 aa8.85□□□□□ -0.99
VPS33B-207ENST00000557470 NUTM2FA1L443 756 aa8.84□□□□□ -0.99
VPS33B-207ENST00000557470 SEC24BO95487 1268 aa8.84□□□□□ -0.99
VPS33B-207ENST00000557470 BLMP54132 1417 aaPredicted RBP8.84□□□□□ -0.99
VPS33B-207ENST00000557470 IER5LQ5T953 404 aa8.84□□□□□ -0.99
VPS33B-207ENST00000557470 UNC5CLQ8IV45 518 aa8.84□□□□□ -0.99
VPS33B-207ENST00000557470 LRPPRCP42704 1394 aaKnown RBP8.84□□□□□ -0.99
VPS33B-207ENST00000557470 ADGRF5Q8IZF2 1346 aa8.83□□□□□ -1
VPS33B-207ENST00000557470 TECPR2O15040 1411 aa8.83□□□□□ -1
VPS33B-207ENST00000557470 WAPLQ7Z5K2 1190 aa8.83□□□□□ -1
VPS33B-207ENST00000557470 STK26Q9P289 416 aa8.83□□□□□ -1
VPS33B-207ENST00000557470 PLEKHH1Q9ULM0 1364 aa8.83□□□□□ -1
VPS33B-207ENST00000557470 SPATA31A3Q5VYP0 1347 aa8.82□□□□□ -1
VPS33B-207ENST00000557470 RRBP1Q9P2E9 1410 aaKnown RBP8.82□□□□□ -1
VPS33B-207ENST00000557470 DEFB132Q7Z7B7 95 aa8.82□□□□□ -1
VPS33B-207ENST00000557470 USP32Q8NFA0 1604 aa8.82□□□□□ -1
VPS33B-207ENST00000557470 CCDC144AA2RUR9 1427 aa8.81□□□□□ -1
VPS33B-207ENST00000557470 HOMEZQ8IX15 550 aa8.81□□□□□ -1
VPS33B-207ENST00000557470 SEPT12Q8IYM1 358 aa8.81□□□□□ -1
VPS33B-207ENST00000557470 FMN2Q9NZ56 1722 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 BRWD3Q6RI45 1802 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 PSEN1P49768 467 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 IRX5P78411 483 aaPredicted RBP8.8□□□□□ -1
VPS33B-207ENST00000557470 TMEM132EQ6IEE7 984 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 ABCC11Q96J66 1382 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 KIF1AQ12756 1690 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 TNS3Q68CZ2 1445 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 SPATA31E1Q6ZUB1 1445 aa8.8□□□□□ -1
VPS33B-207ENST00000557470 SF3B2Q13435 895 aaKnown RBP8.79□□□□□ -1
VPS33B-207ENST00000557470 VPS72Q15906 364 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 RGL3Q3MIN7 710 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 KRT28Q7Z3Y7 464 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 CABLES1Q8TDN4 633 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 GTF3C3Q9Y5Q9 886 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 KNDC1Q76NI1 1749 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 LRP5O75197 1615 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 PIK3C2GO75747 1445 aa8.79□□□□□ -1
VPS33B-207ENST00000557470 PLCH1Q4KWH8 1693 aa8.78□□□□□ -1
VPS33B-207ENST00000557470 ANKRD30BQ9BXX2 1392 aa8.78□□□□□ -1
VPS33B-207ENST00000557470 KRT27Q7Z3Y8 459 aa8.78□□□□□ -1
VPS33B-207ENST00000557470 YTHDC2Q9H6S0 1430 aaKnown RBP8.78□□□□□ -1
VPS33B-207ENST00000557470 IFT172Q9UG01 1749 aa8.77□□□□□ -1
VPS33B-207ENST00000557470 ONECUT3O60422 494 aaPredicted RBP8.77□□□□□ -1.01
VPS33B-207ENST00000557470 PLCG2P16885 1265 aa8.77□□□□□ -1.01
VPS33B-207ENST00000557470 PDAP1Q13442 181 aaKnown RBP8.77□□□□□ -1.01
VPS33B-207ENST00000557470 PHF8Q9UPP1 1060 aa8.77□□□□□ -1.01
VPS33B-207ENST00000557470 CCDC9Q9Y3X0 531 aaKnown RBP8.77□□□□□ -1.01
VPS33B-207ENST00000557470 ABCA3Q99758 1704 aa8.77□□□□□ -1.01
VPS33B-207ENST00000557470 NWD2Q9ULI1 1742 aa8.77□□□□□ -1.01
VPS33B-207ENST00000557470 SBNO1A3KN83 1393 aa8.76□□□□□ -1.01
VPS33B-207ENST00000557470 PSDA5PKW4 1024 aaPredicted RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms