RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 HAP1P54257 671 aaPredicted RBP17.57■□□□□ 0.4
SLIRP-209ENST00000557342 PUS7Q96PZ0 661 aaKnown RBP17.57■□□□□ 0.4
SLIRP-209ENST00000557342 NGLY1Q96IV0 654 aa17.56■□□□□ 0.4
SLIRP-209ENST00000557342 CRYBG1Q9Y4K1 1723 aa17.55■□□□□ 0.4
SLIRP-209ENST00000557342 AFF2P51816 1311 aa17.55■□□□□ 0.4
SLIRP-209ENST00000557342 TESK2Q96S53 571 aa17.55■□□□□ 0.4
SLIRP-209ENST00000557342 ZNF692Q9BU19 519 aaPredicted RBP17.54■□□□□ 0.4
SLIRP-209ENST00000557342 POTEAQ6S8J7 498 aa17.53■□□□□ 0.4
SLIRP-209ENST00000557342 USP6P35125 1406 aa17.53■□□□□ 0.4
SLIRP-209ENST00000557342 MON2Q7Z3U7 1717 aa17.52■□□□□ 0.4
SLIRP-209ENST00000557342 PHRF1Q9P1Y6 1649 aaKnown RBP17.52■□□□□ 0.4
SLIRP-209ENST00000557342 TMF1P82094 1093 aa17.52■□□□□ 0.4
SLIRP-209ENST00000557342 CABLES1Q8TDN4 633 aa17.52■□□□□ 0.4
SLIRP-209ENST00000557342 FNBP4Q8N3X1 1017 aaPredicted RBP17.51■□□□□ 0.39
SLIRP-209ENST00000557342 ABTB2Q8N961 1025 aa17.51■□□□□ 0.39
SLIRP-209ENST00000557342 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.51■□□□□ 0.39
SLIRP-209ENST00000557342 NWD2Q9ULI1 1742 aa17.5■□□□□ 0.39
SLIRP-209ENST00000557342 CPSF1Q10570 1443 aaKnown RBP17.5■□□□□ 0.39
SLIRP-209ENST00000557342 PLEKHG5O94827 1062 aa17.5■□□□□ 0.39
SLIRP-209ENST00000557342 NINLQ9Y2I6 1382 aa17.5■□□□□ 0.39
SLIRP-209ENST00000557342 PLCH1Q4KWH8 1693 aa17.49■□□□□ 0.39
SLIRP-209ENST00000557342 CDCA8Q53HL2 280 aa17.49■□□□□ 0.39
SLIRP-209ENST00000557342 TMC1Q8TDI8 760 aa17.49■□□□□ 0.39
SLIRP-209ENST00000557342 USP21Q9UK80 565 aa17.49■□□□□ 0.39
SLIRP-209ENST00000557342 NRKQ7Z2Y5 1582 aa17.49■□□□□ 0.39
SLIRP-209ENST00000557342 NLRP13Q86W25 1043 aa17.48■□□□□ 0.39
SLIRP-209ENST00000557342 KTN1Q86UP2 1357 aaKnown RBP17.48■□□□□ 0.39
SLIRP-209ENST00000557342 COL14A1Q05707 1796 aaKnown RBP17.48■□□□□ 0.39
SLIRP-209ENST00000557342 SSH2Q76I76 1423 aa17.47■□□□□ 0.39
SLIRP-209ENST00000557342 EIF4G2P78344 907 aaKnown RBP eCLIP17.47■□□□□ 0.39
SLIRP-209ENST00000557342 HDGFL2Q7Z4V5 671 aaPredicted RBP17.47■□□□□ 0.39
SLIRP-209ENST00000557342 QTRT2Q9H974 415 aaKnown RBP17.47■□□□□ 0.39
SLIRP-209ENST00000557342 PIK3C2AO00443 1686 aa17.47■□□□□ 0.39
SLIRP-209ENST00000557342 SLIT2O94813 1529 aa17.47■□□□□ 0.39
SLIRP-209ENST00000557342 TTC21AQ8NDW8 1320 aa17.47■□□□□ 0.39
SLIRP-209ENST00000557342 RXRBP28702 533 aa17.46■□□□□ 0.39
SLIRP-209ENST00000557342 NUTM2GQ5VZR2 741 aa17.46■□□□□ 0.39
SLIRP-209ENST00000557342 TERF2IPQ9NYB0 399 aa17.46■□□□□ 0.39
SLIRP-209ENST00000557342 TRPC5Q9UL62 973 aaPredicted RBP17.46■□□□□ 0.39
SLIRP-209ENST00000557342 CD163L1Q9NR16 1453 aa17.45■□□□□ 0.38
SLIRP-209ENST00000557342 SLC12A5Q9H2X9 1139 aa17.45■□□□□ 0.38
SLIRP-209ENST00000557342 TTC21BQ7Z4L5 1316 aa17.45■□□□□ 0.38
SLIRP-209ENST00000557342 BCL9LQ86UU0 1499 aa17.44■□□□□ 0.38
SLIRP-209ENST00000557342 USP19O94966 1318 aa17.44■□□□□ 0.38
SLIRP-209ENST00000557342 NLRP6P59044 892 aa17.43■□□□□ 0.38
SLIRP-209ENST00000557342 RBM6P78332 1123 aaKnown RBP17.43■□□□□ 0.38
SLIRP-209ENST00000557342 UNC5CLQ8IV45 518 aa17.43■□□□□ 0.38
SLIRP-209ENST00000557342 ATRNO75882 1429 aa17.43■□□□□ 0.38
SLIRP-209ENST00000557342 CDK12Q9NYV4 1490 aaPredicted RBP17.43■□□□□ 0.38
SLIRP-209ENST00000557342 NRAPQ86VF7 1730 aa17.42■□□□□ 0.38
SLIRP-209ENST00000557342 EDC4Q6P2E9 1401 aaKnown RBP17.42■□□□□ 0.38
SLIRP-209ENST00000557342 FAM83GA6ND36 823 aa17.42■□□□□ 0.38
SLIRP-209ENST00000557342 USP54Q70EL1 1684 aa17.42■□□□□ 0.38
SLIRP-209ENST00000557342 A0A1W2PP64 1363 aa17.41■□□□□ 0.38
SLIRP-209ENST00000557342 PRDM11Q9NQV5 511 aa17.41■□□□□ 0.38
SLIRP-209ENST00000557342 SLIT3O75094 1523 aa17.41■□□□□ 0.38
SLIRP-209ENST00000557342 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
SLIRP-209ENST00000557342 KIAA0232Q92628 1395 aa17.4■□□□□ 0.38
SLIRP-209ENST00000557342 MYOM1P52179 1685 aa17.39■□□□□ 0.37
SLIRP-209ENST00000557342 GCP02774 474 aa17.39■□□□□ 0.37
SLIRP-209ENST00000557342 CPDO75976 1380 aa17.39■□□□□ 0.37
SLIRP-209ENST00000557342 ANKRD36BQ8N2N9 1353 aa17.39■□□□□ 0.37
SLIRP-209ENST00000557342 ZC3H6P61129 1189 aaKnown RBP17.38■□□□□ 0.37
SLIRP-209ENST00000557342 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.38■□□□□ 0.37
SLIRP-209ENST00000557342 BTG4Q9NY30 223 aa17.38■□□□□ 0.37
SLIRP-209ENST00000557342 KCNH5Q8NCM2 988 aa17.37■□□□□ 0.37
SLIRP-209ENST00000557342 GJD4Q96KN9 370 aaPredicted RBP17.37■□□□□ 0.37
SLIRP-209ENST00000557342 VPS72Q15906 364 aa17.36■□□□□ 0.37
SLIRP-209ENST00000557342 USP31Q70CQ4 1352 aa17.36■□□□□ 0.37
SLIRP-209ENST00000557342 GLI3P10071 1580 aa17.35■□□□□ 0.37
SLIRP-209ENST00000557342 LMO7Q8WWI1 1683 aa17.35■□□□□ 0.37
SLIRP-209ENST00000557342 RGS12O14924 1447 aa17.34■□□□□ 0.37
SLIRP-209ENST00000557342 CHRNA2Q15822 529 aa17.34■□□□□ 0.37
SLIRP-209ENST00000557342 KIF20BQ96Q89 1820 aa17.34■□□□□ 0.37
SLIRP-209ENST00000557342 CCDC9Q9Y3X0 531 aaKnown RBP17.34■□□□□ 0.37
SLIRP-209ENST00000557342 NME9Q86XW9 330 aa17.33■□□□□ 0.36
SLIRP-209ENST00000557342 LTN1O94822 1766 aa17.32■□□□□ 0.36
SLIRP-209ENST00000557342 COL18A1P39060 1754 aa17.32■□□□□ 0.36
SLIRP-209ENST00000557342 NFAT5O94916 1531 aa17.31■□□□□ 0.36
SLIRP-209ENST00000557342 RGPD5Q99666 1765 aa17.31■□□□□ 0.36
SLIRP-209ENST00000557342 EVA1CP58658 441 aa17.31■□□□□ 0.36
SLIRP-209ENST00000557342 POLR3GLQ9BT43 218 aa17.31■□□□□ 0.36
SLIRP-209ENST00000557342 CAMTA1Q9Y6Y1 1673 aa17.31■□□□□ 0.36
SLIRP-209ENST00000557342 OVOS2A0A0J9YW53 1432 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 OVOS2Q6IE36 1432 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 AATKQ6ZMQ8 1374 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 ZBTB7CA1YPR0 619 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 ZRANB1Q9UGI0 708 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 ABCC6O95255 1503 aa17.3■□□□□ 0.36
SLIRP-209ENST00000557342 SOX12O15370 315 aa17.29■□□□□ 0.36
SLIRP-209ENST00000557342 BRWD3Q6RI45 1802 aa17.28■□□□□ 0.36
SLIRP-209ENST00000557342 ARHGEF25Q86VW2 580 aa17.28■□□□□ 0.36
SLIRP-209ENST00000557342 COG3Q96JB2 828 aa17.28■□□□□ 0.36
SLIRP-209ENST00000557342 STRN4Q9NRL3 753 aa17.28■□□□□ 0.36
SLIRP-209ENST00000557342 SPATA31A5Q5VU36 1347 aa17.27■□□□□ 0.36
SLIRP-209ENST00000557342 SPATA31A7Q8IWB4 1347 aa17.27■□□□□ 0.36
SLIRP-209ENST00000557342 COL5A2P05997 1499 aaPredicted RBP17.27■□□□□ 0.36
SLIRP-209ENST00000557342 ONECUT3O60422 494 aaPredicted RBP17.26■□□□□ 0.35
SLIRP-209ENST00000557342 NSD3Q9BZ95 1437 aa17.25■□□□□ 0.35
SLIRP-209ENST00000557342 FYB1O15117 783 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms