RNA–Protein interactions for RNA: ENST00000557084.1

SYNE2-226, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 689 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-226ENST00000557084 ITSN1Q15811 1721 aa16.9■□□□□ 0.3
SYNE2-226ENST00000557084 PPIP5K1Q6PFW1 1433 aa16.89■□□□□ 0.29
SYNE2-226ENST00000557084 QRICH2Q9H0J4 1663 aa16.88■□□□□ 0.29
SYNE2-226ENST00000557084 CABP1Q9NZU7 370 aa16.88■□□□□ 0.29
SYNE2-226ENST00000557084 POLR3AO14802 1390 aaPredicted RBP16.88■□□□□ 0.29
SYNE2-226ENST00000557084 NPM3O75607 178 aaKnown RBP16.87■□□□□ 0.29
SYNE2-226ENST00000557084 NUTM2GQ5VZR2 741 aa16.87■□□□□ 0.29
SYNE2-226ENST00000557084 UNC5CLQ8IV45 518 aa16.87■□□□□ 0.29
SYNE2-226ENST00000557084 ABTB2Q8N961 1025 aa16.86■□□□□ 0.29
SYNE2-226ENST00000557084 CCDC9Q9Y3X0 531 aaKnown RBP16.86■□□□□ 0.29
SYNE2-226ENST00000557084 RALGAPBQ86X10 1494 aa16.86■□□□□ 0.29
SYNE2-226ENST00000557084 CDK12Q9NYV4 1490 aaPredicted RBP16.86■□□□□ 0.29
SYNE2-226ENST00000557084 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
SYNE2-226ENST00000557084 BCL9LQ86UU0 1499 aa16.85■□□□□ 0.29
SYNE2-226ENST00000557084 FAM83GA6ND36 823 aa16.84■□□□□ 0.29
SYNE2-226ENST00000557084 GJD4Q96KN9 370 aaPredicted RBP16.84■□□□□ 0.29
SYNE2-226ENST00000557084 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
SYNE2-226ENST00000557084 ATRNO75882 1429 aa16.84■□□□□ 0.29
SYNE2-226ENST00000557084 TRPM3Q9HCF6 1732 aaPredicted RBP16.83■□□□□ 0.28
SYNE2-226ENST00000557084 PRDM11Q9NQV5 511 aa16.83■□□□□ 0.28
SYNE2-226ENST00000557084 ATAD2Q6PL18 1390 aa16.82■□□□□ 0.28
SYNE2-226ENST00000557084 RNF216Q9NWF9 866 aaPredicted RBP16.82■□□□□ 0.28
SYNE2-226ENST00000557084 TIMELESSQ9UNS1 1208 aa16.82■□□□□ 0.28
SYNE2-226ENST00000557084 MARF1Q9Y4F3 1742 aaKnown RBP16.82■□□□□ 0.28
SYNE2-226ENST00000557084 TOPAZ1Q8N9V7 1692 aa16.81■□□□□ 0.28
SYNE2-226ENST00000557084 RGS12O14924 1447 aa16.81■□□□□ 0.28
SYNE2-226ENST00000557084 NLRP13Q86W25 1043 aa16.81■□□□□ 0.28
SYNE2-226ENST00000557084 ZNF692Q9BU19 519 aaPredicted RBP16.81■□□□□ 0.28
SYNE2-226ENST00000557084 BTG4Q9NY30 223 aa16.81■□□□□ 0.28
SYNE2-226ENST00000557084 SLIT2O94813 1529 aa16.8■□□□□ 0.28
SYNE2-226ENST00000557084 BRD4O60885 1362 aaPredicted RBP16.8■□□□□ 0.28
SYNE2-226ENST00000557084 SLC24A1O60721 1099 aa16.8■□□□□ 0.28
SYNE2-226ENST00000557084 ZC3H6P61129 1189 aaKnown RBP16.8■□□□□ 0.28
SYNE2-226ENST00000557084 TMC1Q8TDI8 760 aa16.8■□□□□ 0.28
SYNE2-226ENST00000557084 ALS2Q96Q42 1657 aa16.8■□□□□ 0.28
SYNE2-226ENST00000557084 SBNO2Q9Y2G9 1366 aa16.79■□□□□ 0.28
SYNE2-226ENST00000557084 VPS72Q15906 364 aa16.79■□□□□ 0.28
SYNE2-226ENST00000557084 ST20-MTHFSA0A0A6YYL1 179 aa16.78■□□□□ 0.28
SYNE2-226ENST00000557084 A0A0G2JS52 829 aa16.78■□□□□ 0.28
SYNE2-226ENST00000557084 HOXD11P31277 338 aaPredicted RBP16.78■□□□□ 0.28
SYNE2-226ENST00000557084 NLRP6P59044 892 aa16.78■□□□□ 0.28
SYNE2-226ENST00000557084 MYT1Q01538 1121 aa16.78■□□□□ 0.28
SYNE2-226ENST00000557084 USP6P35125 1406 aa16.78■□□□□ 0.28
SYNE2-226ENST00000557084 KIAA0232Q92628 1395 aa16.77■□□□□ 0.28
SYNE2-226ENST00000557084 CHRNA2Q15822 529 aa16.76■□□□□ 0.27
SYNE2-226ENST00000557084 UPF1Q92900 1129 aaKnown RBP eCLIP16.76■□□□□ 0.27
SYNE2-226ENST00000557084 ABCA3Q99758 1704 aa16.76■□□□□ 0.27
SYNE2-226ENST00000557084 ZBTB7CA1YPR0 619 aa16.75■□□□□ 0.27
SYNE2-226ENST00000557084 EVA1CP58658 441 aa16.75■□□□□ 0.27
SYNE2-226ENST00000557084 HDGFL2Q7Z4V5 671 aaPredicted RBP16.75■□□□□ 0.27
SYNE2-226ENST00000557084 KTN1Q86UP2 1357 aaKnown RBP16.75■□□□□ 0.27
SYNE2-226ENST00000557084 GCP02774 474 aa16.74■□□□□ 0.27
SYNE2-226ENST00000557084 STRN4Q9NRL3 753 aa16.74■□□□□ 0.27
SYNE2-226ENST00000557084 TERF2IPQ9NYB0 399 aa16.74■□□□□ 0.27
SYNE2-226ENST00000557084 USP19O94966 1318 aa16.73■□□□□ 0.27
SYNE2-226ENST00000557084 TTC21BQ7Z4L5 1316 aa16.73■□□□□ 0.27
SYNE2-226ENST00000557084 SEPT12Q8IYM1 358 aa16.73■□□□□ 0.27
SYNE2-226ENST00000557084 USP47Q96K76 1375 aa16.73■□□□□ 0.27
SYNE2-226ENST00000557084 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.73■□□□□ 0.27
SYNE2-226ENST00000557084 PLCH1Q4KWH8 1693 aa16.72■□□□□ 0.27
SYNE2-226ENST00000557084 COL14A1Q05707 1796 aaKnown RBP16.72■□□□□ 0.27
SYNE2-226ENST00000557084 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.72■□□□□ 0.27
SYNE2-226ENST00000557084 PUS7Q96PZ0 661 aaKnown RBP16.72■□□□□ 0.27
SYNE2-226ENST00000557084 NWD2Q9ULI1 1742 aa16.72■□□□□ 0.27
SYNE2-226ENST00000557084 TTC21AQ8NDW8 1320 aa16.71■□□□□ 0.27
SYNE2-226ENST00000557084 TMF1P82094 1093 aa16.71■□□□□ 0.27
SYNE2-226ENST00000557084 FAM98CQ17RN3 349 aaKnown RBP16.71■□□□□ 0.27
SYNE2-226ENST00000557084 TESK2Q96S53 571 aa16.71■□□□□ 0.27
SYNE2-226ENST00000557084 SLC12A5Q9H2X9 1139 aa16.71■□□□□ 0.27
SYNE2-226ENST00000557084 EP400Q96L91 3159 aa16.71■□□□□ 0.26
SYNE2-226ENST00000557084 SOX12O15370 315 aa16.7■□□□□ 0.26
SYNE2-226ENST00000557084 CPDO75976 1380 aa16.69■□□□□ 0.26
SYNE2-226ENST00000557084 KCNH5Q8NCM2 988 aa16.69■□□□□ 0.26
SYNE2-226ENST00000557084 CPSF1Q10570 1443 aaKnown RBP16.69■□□□□ 0.26
SYNE2-226ENST00000557084 SPATA31A5Q5VU36 1347 aa16.69■□□□□ 0.26
SYNE2-226ENST00000557084 SPATA31A7Q8IWB4 1347 aa16.69■□□□□ 0.26
SYNE2-226ENST00000557084 GLI3P10071 1580 aa16.68■□□□□ 0.26
SYNE2-226ENST00000557084 CDCA8Q53HL2 280 aa16.68■□□□□ 0.26
SYNE2-226ENST00000557084 SSH2Q76I76 1423 aa16.68■□□□□ 0.26
SYNE2-226ENST00000557084 PHRF1Q9P1Y6 1649 aaKnown RBP16.67■□□□□ 0.26
SYNE2-226ENST00000557084 ONECUT3O60422 494 aaPredicted RBP16.67■□□□□ 0.26
SYNE2-226ENST00000557084 USP35Q9P2H5 1018 aa16.67■□□□□ 0.26
SYNE2-226ENST00000557084 CRYBG1Q9Y4K1 1723 aa16.67■□□□□ 0.26
SYNE2-226ENST00000557084 NINLQ9Y2I6 1382 aa16.66■□□□□ 0.26
SYNE2-226ENST00000557084 KRT27Q7Z3Y8 459 aa16.66■□□□□ 0.26
SYNE2-226ENST00000557084 NRKQ7Z2Y5 1582 aa16.65■□□□□ 0.26
SYNE2-226ENST00000557084 SPATA31A1Q5TZJ5 1347 aa16.65■□□□□ 0.26
SYNE2-226ENST00000557084 NME9Q86XW9 330 aa16.64■□□□□ 0.25
SYNE2-226ENST00000557084 CCDC125Q86Z20 511 aa16.64■□□□□ 0.25
SYNE2-226ENST00000557084 EDC4Q6P2E9 1401 aaKnown RBP16.63■□□□□ 0.25
SYNE2-226ENST00000557084 SF3B2Q13435 895 aaKnown RBP16.63■□□□□ 0.25
SYNE2-226ENST00000557084 LARP1Q6PKG0 1096 aaKnown RBP16.63■□□□□ 0.25
SYNE2-226ENST00000557084 A0A1W2PP64 1363 aa16.63■□□□□ 0.25
SYNE2-226ENST00000557084 AATKQ6ZMQ8 1374 aa16.63■□□□□ 0.25
SYNE2-226ENST00000557084 NRAPQ86VF7 1730 aa16.62■□□□□ 0.25
SYNE2-226ENST00000557084 AKAP12Q02952 1782 aa16.62■□□□□ 0.25
SYNE2-226ENST00000557084 ZRANB1Q9UGI0 708 aa16.62■□□□□ 0.25
SYNE2-226ENST00000557084 PIK3C2AO00443 1686 aa16.62■□□□□ 0.25
SYNE2-226ENST00000557084 CSB-PGBD3P0DP91 1061 aa16.61■□□□□ 0.25
SYNE2-226ENST00000557084 ARHGEF25Q86VW2 580 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms