RNA–Protein interactions for RNA: ENST00000556952.3

SIX4-203, Transcript of SIX homeobox 4, humanhuman

TSL 5

Gene SIX4, Length 1,573 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-203ENST00000556952 CPSF1Q10570 1443 aaKnown RBP32.31■■■□□ 2.76
SIX4-203ENST00000556952 SOS2Q07890 1332 aaPredicted RBP32.3■■■□□ 2.76
SIX4-203ENST00000556952 NPHP3Q7Z494 1330 aa32.3■■■□□ 2.76
SIX4-203ENST00000556952 SHPRHQ149N8 1683 aa32.3■■■□□ 2.76
SIX4-203ENST00000556952 XPCQ01831 940 aaPredicted RBP32.29■■■□□ 2.76
SIX4-203ENST00000556952 KIF20BQ96Q89 1820 aa32.28■■■□□ 2.76
SIX4-203ENST00000556952 CC2D1BQ5T0F9 858 aaKnown RBP32.28■■■□□ 2.76
SIX4-203ENST00000556952 CGNL1Q0VF96 1302 aa32.27■■■□□ 2.76
SIX4-203ENST00000556952 NSD2O96028 1365 aa32.27■■■□□ 2.76
SIX4-203ENST00000556952 ANKRD26Q9UPS8 1709 aa32.26■■■□□ 2.76
SIX4-203ENST00000556952 PLEKHG3A1L390 1219 aa32.26■■■□□ 2.75
SIX4-203ENST00000556952 CNGB1Q14028 1251 aaPredicted RBP32.25■■■□□ 2.75
SIX4-203ENST00000556952 MYBBP1AQ9BQG0 1328 aaKnown RBP32.25■■■□□ 2.75
SIX4-203ENST00000556952 JCADQ9P266 1359 aa32.25■■■□□ 2.75
SIX4-203ENST00000556952 EDC4Q6P2E9 1401 aaKnown RBP32.23■■■□□ 2.75
SIX4-203ENST00000556952 NRKQ7Z2Y5 1582 aa32.23■■■□□ 2.75
SIX4-203ENST00000556952 TRPM3Q9HCF6 1732 aaPredicted RBP32.22■■■□□ 2.75
SIX4-203ENST00000556952 ZNF692Q9BU19 519 aaPredicted RBP32.22■■■□□ 2.75
SIX4-203ENST00000556952 LRRC59Q96AG4 307 aaKnown RBP32.2■■■□□ 2.75
SIX4-203ENST00000556952 KRT28Q7Z3Y7 464 aa32.19■■■□□ 2.74
SIX4-203ENST00000556952 POLR3AO14802 1390 aaPredicted RBP32.19■■■□□ 2.74
SIX4-203ENST00000556952 MED1Q15648 1581 aaPredicted RBP32.18■■■□□ 2.74
SIX4-203ENST00000556952 PNPLA6Q8IY17 1366 aa32.17■■■□□ 2.74
SIX4-203ENST00000556952 NGDNQ8NEJ9 315 aaKnown RBP32.17■■■□□ 2.74
SIX4-203ENST00000556952 ACEP12821 1306 aa32.16■■■□□ 2.74
SIX4-203ENST00000556952 PSME1Q06323 249 aa32.15■■■□□ 2.74
SIX4-203ENST00000556952 BRD4O60885 1362 aaPredicted RBP32.15■■■□□ 2.74
SIX4-203ENST00000556952 NLRP13Q86W25 1043 aa32.15■■■□□ 2.74
SIX4-203ENST00000556952 COL22A1Q8NFW1 1626 aaPredicted RBP32.15■■■□□ 2.74
SIX4-203ENST00000556952 USP6P35125 1406 aa32.14■■■□□ 2.74
SIX4-203ENST00000556952 ALS2Q96Q42 1657 aa32.13■■■□□ 2.73
SIX4-203ENST00000556952 SPATA31A3Q5VYP0 1347 aa32.12■■■□□ 2.73
SIX4-203ENST00000556952 TNS3Q68CZ2 1445 aa32.12■■■□□ 2.73
SIX4-203ENST00000556952 LRP6O75581 1613 aa32.11■■■□□ 2.73
SIX4-203ENST00000556952 MRS2Q9HD23 443 aa32.11■■■□□ 2.73
SIX4-203ENST00000556952 SBNO1A3KN83 1393 aa32.11■■■□□ 2.73
SIX4-203ENST00000556952 MORC1Q86VD1 984 aa32.08■■■□□ 2.73
SIX4-203ENST00000556952 FYB1O15117 783 aa32.07■■■□□ 2.72
SIX4-203ENST00000556952 SSH2Q76I76 1423 aa32.07■■■□□ 2.72
SIX4-203ENST00000556952 SPATA31A6Q5VVP1 1343 aa32.07■■■□□ 2.72
SIX4-203ENST00000556952 CCDC184Q52MB2 194 aa32.07■■■□□ 2.72
SIX4-203ENST00000556952 PPP2R1AP30153 589 aa32.06■■■□□ 2.72
SIX4-203ENST00000556952 ABCA3Q99758 1704 aa32.04■■■□□ 2.72
SIX4-203ENST00000556952 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.04■■■□□ 2.72
SIX4-203ENST00000556952 NUTM2BA6NNL0 878 aaPredicted RBP32.02■■■□□ 2.72
SIX4-203ENST00000556952 NUTM2EB1AL46 878 aaPredicted RBP32.02■■■□□ 2.72
SIX4-203ENST00000556952 NUTM2AQ8IVF1 878 aaPredicted RBP32.02■■■□□ 2.72
SIX4-203ENST00000556952 GGNBP2Q9H3C7 697 aa32.02■■■□□ 2.72
SIX4-203ENST00000556952 TTC21BQ7Z4L5 1316 aa32.02■■■□□ 2.72
SIX4-203ENST00000556952 TTC21AQ8NDW8 1320 aa32.02■■■□□ 2.72
SIX4-203ENST00000556952 PAK3O75914 559 aaPredicted RBP32.01■■■□□ 2.71
SIX4-203ENST00000556952 LMOD2Q6P5Q4 547 aa32.01■■■□□ 2.71
SIX4-203ENST00000556952 CRYBG1Q9Y4K1 1723 aa32■■■□□ 2.71
SIX4-203ENST00000556952 ARHGEF10O15013 1369 aa31.99■■■□□ 2.71
SIX4-203ENST00000556952 USP54Q70EL1 1684 aa31.99■■■□□ 2.71
SIX4-203ENST00000556952 PIK3C2AO00443 1686 aa31.97■■■□□ 2.71
SIX4-203ENST00000556952 MARF1Q9Y4F3 1742 aaKnown RBP31.96■■■□□ 2.71
SIX4-203ENST00000556952 NME9Q86XW9 330 aa31.96■■■□□ 2.71
SIX4-203ENST00000556952 PLEKHG5O94827 1062 aa31.95■■■□□ 2.71
SIX4-203ENST00000556952 OVOS2A0A0J9YW53 1432 aa31.94■■■□□ 2.7
SIX4-203ENST00000556952 OVOS2Q6IE36 1432 aa31.94■■■□□ 2.7
SIX4-203ENST00000556952 CABLES1Q8TDN4 633 aa31.94■■■□□ 2.7
SIX4-203ENST00000556952 COG3Q96JB2 828 aa31.92■■■□□ 2.7
SIX4-203ENST00000556952 PHRF1Q9P1Y6 1649 aaKnown RBP31.92■■■□□ 2.7
SIX4-203ENST00000556952 TNNT2P45379 298 aaPredicted RBP31.9■■■□□ 2.7
SIX4-203ENST00000556952 PNISRQ8TF01 805 aaKnown RBP31.9■■■□□ 2.7
SIX4-203ENST00000556952 YTHDC1Q96MU7 727 aaKnown RBP31.9■■■□□ 2.7
SIX4-203ENST00000556952 ADAMTS2O95450 1211 aa31.9■■■□□ 2.7
SIX4-203ENST00000556952 NUTM2GQ5VZR2 741 aa31.9■■■□□ 2.7
SIX4-203ENST00000556952 USP31Q70CQ4 1352 aa31.9■■■□□ 2.7
SIX4-203ENST00000556952 MEX3CQ5U5Q3 659 aaKnown RBP31.89■■■□□ 2.7
SIX4-203ENST00000556952 MAP2P11137 1827 aaKnown RBP31.87■■■□□ 2.69
SIX4-203ENST00000556952 AATKQ6ZMQ8 1374 aa31.87■■■□□ 2.69
SIX4-203ENST00000556952 FAM9BQ8IZU0 186 aa31.86■■■□□ 2.69
SIX4-203ENST00000556952 ABTB2Q8N961 1025 aa31.86■■■□□ 2.69
SIX4-203ENST00000556952 PHF23Q9BUL5 403 aaPredicted RBP31.84■■■□□ 2.69
SIX4-203ENST00000556952 ZRANB1Q9UGI0 708 aa31.84■■■□□ 2.69
SIX4-203ENST00000556952 SMG6Q86US8 1419 aaKnown RBP31.83■■■□□ 2.69
SIX4-203ENST00000556952 MTHFSP49914 203 aa31.82■■■□□ 2.68
SIX4-203ENST00000556952 C8orf37Q96NL8 207 aa31.81■■■□□ 2.68
SIX4-203ENST00000556952 RGS17Q9UGC6 210 aaPredicted RBP31.81■■■□□ 2.68
SIX4-203ENST00000556952 HAP1P54257 671 aaPredicted RBP31.81■■■□□ 2.68
SIX4-203ENST00000556952 CFAP53Q96M91 514 aa31.81■■■□□ 2.68
SIX4-203ENST00000556952 INSRP06213 1382 aa31.8■■■□□ 2.68
SIX4-203ENST00000556952 USP19O94966 1318 aa31.79■■■□□ 2.68
SIX4-203ENST00000556952 NLRP6P59044 892 aa31.77■■■□□ 2.68
SIX4-203ENST00000556952 PLCH1Q4KWH8 1693 aa31.77■■■□□ 2.68
SIX4-203ENST00000556952 SLIT3O75094 1523 aa31.76■■■□□ 2.68
SIX4-203ENST00000556952 CDK12Q9NYV4 1490 aaPredicted RBP31.76■■■□□ 2.67
SIX4-203ENST00000556952 AFF2P51816 1311 aa31.75■■■□□ 2.67
SIX4-203ENST00000556952 COL3A1P02461 1466 aaPredicted RBP31.75■■■□□ 2.67
SIX4-203ENST00000556952 WDR43Q15061 677 aaKnown RBP eCLIP31.74■■■□□ 2.67
SIX4-203ENST00000556952 NGLY1Q96IV0 654 aa31.74■■■□□ 2.67
SIX4-203ENST00000556952 POLKQ9UBT6 870 aa31.74■■■□□ 2.67
SIX4-203ENST00000556952 COL14A1Q05707 1796 aaKnown RBP31.7■■■□□ 2.67
SIX4-203ENST00000556952 BLMP54132 1417 aaPredicted RBP31.7■■■□□ 2.66
SIX4-203ENST00000556952 KIAA0232Q92628 1395 aa31.68■■■□□ 2.66
SIX4-203ENST00000556952 NWD2Q9ULI1 1742 aa31.68■■■□□ 2.66
SIX4-203ENST00000556952 SLIT2O94813 1529 aa31.68■■■□□ 2.66
SIX4-203ENST00000556952 GCP02774 474 aa31.68■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms