RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, human

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCFD1-222	ENST00000556768	NHSL1	Q5SYE7	1610 aa		10.47	□□□□□ -0.73
SCFD1-222	ENST00000556768	PAK3	O75914	559 aa	Predicted RBP	10.47	□□□□□ -0.73
SCFD1-222	ENST00000556768	PLEKHG5	O94827	1062 aa		10.47	□□□□□ -0.73
SCFD1-222	ENST00000556768	NBPF1	Q3BBV0	1214 aa		10.47	□□□□□ -0.73
SCFD1-222	ENST00000556768	CDK19	Q9BWU1	502 aa		10.47	□□□□□ -0.73
SCFD1-222	ENST00000556768	ARHGEF10	O15013	1369 aa		10.46	□□□□□ -0.73
SCFD1-222	ENST00000556768	NUDT16	Q96DE0	195 aa	Known RBP	10.46	□□□□□ -0.74
SCFD1-222	ENST00000556768	CCDC61	Q9Y6R9	512 aa		10.46	□□□□□ -0.74
SCFD1-222	ENST00000556768	ADGRB1	O14514	1584 aa		10.46	□□□□□ -0.74
SCFD1-222	ENST00000556768	SRPK2	P78362	688 aa	Known RBP	10.45	□□□□□ -0.74
SCFD1-222	ENST00000556768	SBNO1	A3KN83	1393 aa		10.45	□□□□□ -0.74
SCFD1-222	ENST00000556768	PXDN	Q92626	1479 aa		10.45	□□□□□ -0.74
SCFD1-222	ENST00000556768	CENPJ	Q9HC77	1338 aa	Predicted RBP	10.45	□□□□□ -0.74
SCFD1-222	ENST00000556768	KNDC1	Q76NI1	1749 aa		10.45	□□□□□ -0.74
SCFD1-222	ENST00000556768	TNS3	Q68CZ2	1445 aa		10.43	□□□□□ -0.74
SCFD1-222	ENST00000556768	RGL2	O15211	777 aa		10.43	□□□□□ -0.74
SCFD1-222	ENST00000556768	UNC5CL	Q8IV45	518 aa		10.43	□□□□□ -0.74
SCFD1-222	ENST00000556768	CABLES1	Q8TDN4	633 aa		10.43	□□□□□ -0.74
SCFD1-222	ENST00000556768	SPRYD3	Q8NCJ5	442 aa		10.42	□□□□□ -0.74
SCFD1-222	ENST00000556768	CCDC9	Q9Y3X0	531 aa	Known RBP	10.42	□□□□□ -0.74
SCFD1-222	ENST00000556768	PRR36	Q9H6K5	1346 aa		10.42	□□□□□ -0.74
SCFD1-222	ENST00000556768	ROCK2	O75116	1388 aa	Known RBP	10.42	□□□□□ -0.74
SCFD1-222	ENST00000556768	GJD4	Q96KN9	370 aa	Predicted RBP	10.42	□□□□□ -0.74
SCFD1-222	ENST00000556768	CDK12	Q9NYV4	1490 aa	Predicted RBP	10.41	□□□□□ -0.74
SCFD1-222	ENST00000556768	TONSL	Q96HA7	1378 aa		10.41	□□□□□ -0.74
SCFD1-222	ENST00000556768	TSHZ2	Q9NRE2	1034 aa		10.41	□□□□□ -0.74
SCFD1-222	ENST00000556768	NBPF8	Q3BBV2	869 aa		10.4	□□□□□ -0.74
SCFD1-222	ENST00000556768	KIF1A	Q12756	1690 aa		10.4	□□□□□ -0.74
SCFD1-222	ENST00000556768	EVC2	Q86UK5	1308 aa		10.4	□□□□□ -0.74
SCFD1-222	ENST00000556768	FMN2	Q9NZ56	1722 aa		10.4	□□□□□ -0.74
SCFD1-222	ENST00000556768	TULP4	Q9NRJ4	1543 aa		10.4	□□□□□ -0.75
SCFD1-222	ENST00000556768	PLEKHG3	A1L390	1219 aa		10.4	□□□□□ -0.75
SCFD1-222	ENST00000556768	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.4	□□□□□ -0.75
SCFD1-222	ENST00000556768	ACE	P12821	1306 aa		10.39	□□□□□ -0.75
SCFD1-222	ENST00000556768	ABTB2	Q8N961	1025 aa		10.39	□□□□□ -0.75
SCFD1-222	ENST00000556768	CARD11	Q9BXL7	1154 aa		10.39	□□□□□ -0.75
SCFD1-222	ENST00000556768	CABP2	Q9NPB3	220 aa		10.39	□□□□□ -0.75
SCFD1-222	ENST00000556768	ZBTB12	Q9Y330	459 aa	Predicted RBP	10.39	□□□□□ -0.75
SCFD1-222	ENST00000556768	ADGRB2	O60241	1585 aa		10.38	□□□□□ -0.75
SCFD1-222	ENST00000556768	FAM83G	A6ND36	823 aa		10.38	□□□□□ -0.75
SCFD1-222	ENST00000556768	PRDM11	Q9NQV5	511 aa		10.38	□□□□□ -0.75
SCFD1-222	ENST00000556768	BCL9L	Q86UU0	1499 aa		10.38	□□□□□ -0.75
SCFD1-222	ENST00000556768	VPS72	Q15906	364 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	CABP1	Q9NZU7	370 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	ATRN	O75882	1429 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768		A0A0G2JS52	829 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	MYT1	Q01538	1121 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	NLRP13	Q86W25	1043 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	BTG4	Q9NY30	223 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	SRCAP	Q6ZRS2	3230 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	COL22A1	Q8NFW1	1626 aa	Predicted RBP	10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	ATAD2	Q6PL18	1390 aa		10.37	□□□□□ -0.75
SCFD1-222	ENST00000556768	NUTM2G	Q5VZR2	741 aa		10.36	□□□□□ -0.75
SCFD1-222	ENST00000556768	ZNF692	Q9BU19	519 aa	Predicted RBP	10.36	□□□□□ -0.75
SCFD1-222	ENST00000556768	CAPN15	O75808	1086 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	CCDC125	Q86Z20	511 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	EP400	Q96L91	3159 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	POLR3A	O14802	1390 aa	Predicted RBP	10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	RGS12	O14924	1447 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	ATP7B	P35670	1465 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	EVA1C	P58658	441 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	PPIP5K1	Q6PFW1	1433 aa		10.35	□□□□□ -0.75
SCFD1-222	ENST00000556768	KIAA1210	Q9ULL0	1709 aa		10.34	□□□□□ -0.75
SCFD1-222	ENST00000556768	ZC3H6	P61129	1189 aa	Known RBP	10.34	□□□□□ -0.75
SCFD1-222	ENST00000556768	BRD4	O60885	1362 aa	Predicted RBP	10.34	□□□□□ -0.75
SCFD1-222	ENST00000556768	SLIT2	O94813	1529 aa		10.34	□□□□□ -0.75
SCFD1-222	ENST00000556768	NLRP6	P59044	892 aa		10.33	□□□□□ -0.76
SCFD1-222	ENST00000556768	SEPT12	Q8IYM1	358 aa		10.33	□□□□□ -0.76
SCFD1-222	ENST00000556768	SF3B2	Q13435	895 aa	Known RBP	10.33	□□□□□ -0.76
SCFD1-222	ENST00000556768	PLCD3	Q8N3E9	789 aa		10.33	□□□□□ -0.76
SCFD1-222	ENST00000556768	ONECUT3	O60422	494 aa	Predicted RBP	10.32	□□□□□ -0.76
SCFD1-222	ENST00000556768	PCGF6	Q9BYE7	350 aa		10.32	□□□□□ -0.76
SCFD1-222	ENST00000556768	STRN4	Q9NRL3	753 aa		10.32	□□□□□ -0.76
SCFD1-222	ENST00000556768	USP32	Q8NFA0	1604 aa		10.32	□□□□□ -0.76
SCFD1-222	ENST00000556768	KIAA0232	Q92628	1395 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	GC	P02774	474 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	CACNB1	Q02641	598 aa	Predicted RBP	10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	CHRNA2	Q15822	529 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	FAM98C	Q17RN3	349 aa	Known RBP	10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	KRT27	Q7Z3Y8	459 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	TMC1	Q8TDI8	760 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	RALGAPB	Q86X10	1494 aa		10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.31	□□□□□ -0.76
SCFD1-222	ENST00000556768	TIMELESS	Q9UNS1	1208 aa		10.3	□□□□□ -0.76
SCFD1-222	ENST00000556768	ZBTB7C	A1YPR0	619 aa		10.29	□□□□□ -0.76
SCFD1-222	ENST00000556768	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.29	□□□□□ -0.76
SCFD1-222	ENST00000556768	KCNH5	Q8NCM2	988 aa		10.29	□□□□□ -0.76
SCFD1-222	ENST00000556768	RGPD8	O14715	1765 aa	Predicted RBP	10.29	□□□□□ -0.76
SCFD1-222	ENST00000556768	TERF2IP	Q9NYB0	399 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	USP35	Q9P2H5	1018 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	SBNO2	Q9Y2G9	1366 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	SPATA31A5	Q5VU36	1347 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	SPATA31A7	Q8IWB4	1347 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	TTC21A	Q8NDW8	1320 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	CLSPN	Q9HAW4	1339 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	PUS7	Q96PZ0	661 aa	Known RBP	10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	USP6	P35125	1406 aa		10.28	□□□□□ -0.76
SCFD1-222	ENST00000556768	ST20-MTHFS	A0A0A6YYL1	179 aa		10.27	□□□□□ -0.77
SCFD1-222	ENST00000556768	KTN1	Q86UP2	1357 aa	Known RBP	10.27	□□□□□ -0.77
SCFD1-222	ENST00000556768	USP19	O94966	1318 aa		10.27	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 531.5 ms