RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZNF692Q9BU19 519 aaPredicted RBP15.96■□□□□ 0.15
CCDC88C-212ENST00000556767 LRP6O75581 1613 aa15.96■□□□□ 0.15
CCDC88C-212ENST00000556767 NUTM2GQ5VZR2 741 aa15.95■□□□□ 0.14
CCDC88C-212ENST00000556767 CABLES1Q8TDN4 633 aa15.95■□□□□ 0.14
CCDC88C-212ENST00000556767 COL22A1Q8NFW1 1626 aaPredicted RBP15.94■□□□□ 0.14
CCDC88C-212ENST00000556767 ABTB2Q8N961 1025 aa15.94■□□□□ 0.14
CCDC88C-212ENST00000556767 TERF2IPQ9NYB0 399 aa15.94■□□□□ 0.14
CCDC88C-212ENST00000556767 KTN1Q86UP2 1357 aaKnown RBP15.94■□□□□ 0.14
CCDC88C-212ENST00000556767 USP6P35125 1406 aa15.94■□□□□ 0.14
CCDC88C-212ENST00000556767 NINLQ9Y2I6 1382 aa15.92■□□□□ 0.14
CCDC88C-212ENST00000556767 C8orf37Q96NL8 207 aa15.92■□□□□ 0.14
CCDC88C-212ENST00000556767 AKAP12Q02952 1782 aa15.92■□□□□ 0.14
CCDC88C-212ENST00000556767 ALS2Q96Q42 1657 aa15.92■□□□□ 0.14
CCDC88C-212ENST00000556767 BRD4O60885 1362 aaPredicted RBP15.91■□□□□ 0.14
CCDC88C-212ENST00000556767 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.91■□□□□ 0.14
CCDC88C-212ENST00000556767 CPSF1Q10570 1443 aaKnown RBP15.91■□□□□ 0.14
CCDC88C-212ENST00000556767 NGLY1Q96IV0 654 aa15.9■□□□□ 0.14
CCDC88C-212ENST00000556767 TTC21BQ7Z4L5 1316 aa15.9■□□□□ 0.14
CCDC88C-212ENST00000556767 A0A1W2PP64 1363 aa15.89■□□□□ 0.13
CCDC88C-212ENST00000556767 ZEB1P37275 1124 aaPredicted RBP15.89■□□□□ 0.13
CCDC88C-212ENST00000556767 NLRP6P59044 892 aa15.89■□□□□ 0.13
CCDC88C-212ENST00000556767 NLRP13Q86W25 1043 aa15.89■□□□□ 0.13
CCDC88C-212ENST00000556767 CD163L1Q9NR16 1453 aa15.89■□□□□ 0.13
CCDC88C-212ENST00000556767 MON2Q7Z3U7 1717 aa15.88■□□□□ 0.13
CCDC88C-212ENST00000556767 SSH2Q76I76 1423 aa15.87■□□□□ 0.13
CCDC88C-212ENST00000556767 TTC21AQ8NDW8 1320 aa15.87■□□□□ 0.13
CCDC88C-212ENST00000556767 ANKRD36BQ8N2N9 1353 aa15.87■□□□□ 0.13
CCDC88C-212ENST00000556767 C11orf95C9JLR9 678 aaPredicted RBP15.86■□□□□ 0.13
CCDC88C-212ENST00000556767 AFF2P51816 1311 aa15.86■□□□□ 0.13
CCDC88C-212ENST00000556767 ABCA3Q99758 1704 aa15.85■□□□□ 0.13
CCDC88C-212ENST00000556767 NME9Q86XW9 330 aa15.85■□□□□ 0.13
CCDC88C-212ENST00000556767 EDC4Q6P2E9 1401 aaKnown RBP15.85■□□□□ 0.13
CCDC88C-212ENST00000556767 NRKQ7Z2Y5 1582 aa15.84■□□□□ 0.13
CCDC88C-212ENST00000556767 SOX12O15370 315 aa15.84■□□□□ 0.13
CCDC88C-212ENST00000556767 ZNF772Q68DY9 489 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-212ENST00000556767 RGS17Q9UGC6 210 aaPredicted RBP15.84■□□□□ 0.13
CCDC88C-212ENST00000556767 MARF1Q9Y4F3 1742 aaKnown RBP15.84■□□□□ 0.13
CCDC88C-212ENST00000556767 PIK3C2AO00443 1686 aa15.83■□□□□ 0.13
CCDC88C-212ENST00000556767 MYOM1P52179 1685 aa15.83■□□□□ 0.13
CCDC88C-212ENST00000556767 ZBTB7CA1YPR0 619 aa15.83■□□□□ 0.12
CCDC88C-212ENST00000556767 ZC3H6P61129 1189 aaKnown RBP15.83■□□□□ 0.12
CCDC88C-212ENST00000556767 PRDM11Q9NQV5 511 aa15.83■□□□□ 0.12
CCDC88C-212ENST00000556767 USP21Q9UK80 565 aa15.83■□□□□ 0.12
CCDC88C-212ENST00000556767 ZRANB1Q9UGI0 708 aa15.82■□□□□ 0.12
CCDC88C-212ENST00000556767 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
CCDC88C-212ENST00000556767 PHRF1Q9P1Y6 1649 aaKnown RBP15.82■□□□□ 0.12
CCDC88C-212ENST00000556767 CRYBG1Q9Y4K1 1723 aa15.82■□□□□ 0.12
CCDC88C-212ENST00000556767 USP19O94966 1318 aa15.81■□□□□ 0.12
CCDC88C-212ENST00000556767 GCP02774 474 aa15.81■□□□□ 0.12
CCDC88C-212ENST00000556767 KIAA0232Q92628 1395 aa15.8■□□□□ 0.12
CCDC88C-212ENST00000556767 FAM83GA6ND36 823 aa15.8■□□□□ 0.12
CCDC88C-212ENST00000556767 NSD3Q9BZ95 1437 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 CHRNA2Q15822 529 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 POTEAQ6S8J7 498 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 FNBP4Q8N3X1 1017 aaPredicted RBP15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 KCNH5Q8NCM2 988 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 CARD14Q9BXL6 1004 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 PANK3Q9H999 370 aa15.79■□□□□ 0.12
CCDC88C-212ENST00000556767 COG3Q96JB2 828 aa15.78■□□□□ 0.12
CCDC88C-212ENST00000556767 QTRT2Q9H974 415 aaKnown RBP15.78■□□□□ 0.12
CCDC88C-212ENST00000556767 USP31Q70CQ4 1352 aa15.77■□□□□ 0.12
CCDC88C-212ENST00000556767 CCDC7Q96M83 1385 aa15.77■□□□□ 0.12
CCDC88C-212ENST00000556767 GGNBP2Q9H3C7 697 aa15.77■□□□□ 0.12
CCDC88C-212ENST00000556767 BTG4Q9NY30 223 aa15.77■□□□□ 0.12
CCDC88C-212ENST00000556767 SLIT3O75094 1523 aa15.77■□□□□ 0.11
CCDC88C-212ENST00000556767 WASHC2AQ641Q2 1341 aa15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 UNC5CLQ8IV45 518 aa15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 TRPC5Q9UL62 973 aaPredicted RBP15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 CCDC9Q9Y3X0 531 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 COL14A1Q05707 1796 aaKnown RBP15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 PLCH1Q4KWH8 1693 aa15.76■□□□□ 0.11
CCDC88C-212ENST00000556767 SLIT2O94813 1529 aa15.75■□□□□ 0.11
CCDC88C-212ENST00000556767 FYB1O15117 783 aa15.75■□□□□ 0.11
CCDC88C-212ENST00000556767 BCL9LQ86UU0 1499 aa15.75■□□□□ 0.11
CCDC88C-212ENST00000556767 CGNL1Q0VF96 1302 aa15.74■□□□□ 0.11
CCDC88C-212ENST00000556767 RXRBP28702 533 aa15.74■□□□□ 0.11
CCDC88C-212ENST00000556767 EVA1CP58658 441 aa15.74■□□□□ 0.11
CCDC88C-212ENST00000556767 STRN4Q9NRL3 753 aa15.74■□□□□ 0.11
CCDC88C-212ENST00000556767 CPDO75976 1380 aa15.74■□□□□ 0.11
CCDC88C-212ENST00000556767 KIF20BQ96Q89 1820 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 ILDR2Q71H61 639 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 KNSTRNQ9Y448 316 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 OVOS2A0A0J9YW53 1432 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 OVOS2Q6IE36 1432 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 NWD2Q9ULI1 1742 aa15.73■□□□□ 0.11
CCDC88C-212ENST00000556767 RBM6P78332 1123 aaKnown RBP15.72■□□□□ 0.11
CCDC88C-212ENST00000556767 USP54Q70EL1 1684 aa15.72■□□□□ 0.11
CCDC88C-212ENST00000556767 ATRNO75882 1429 aa15.71■□□□□ 0.11
CCDC88C-212ENST00000556767 ARHGEF25Q86VW2 580 aa15.71■□□□□ 0.11
CCDC88C-212ENST00000556767 NFAT5O94916 1531 aa15.7■□□□□ 0.1
CCDC88C-212ENST00000556767 VPS72Q15906 364 aa15.7■□□□□ 0.1
CCDC88C-212ENST00000556767 GJD4Q96KN9 370 aaPredicted RBP15.7■□□□□ 0.1
CCDC88C-212ENST00000556767 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.7■□□□□ 0.1
CCDC88C-212ENST00000556767 FBLN1P23142 703 aa15.69■□□□□ 0.1
CCDC88C-212ENST00000556767 AATKQ6ZMQ8 1374 aa15.69■□□□□ 0.1
CCDC88C-212ENST00000556767 NRAPQ86VF7 1730 aa15.68■□□□□ 0.1
CCDC88C-212ENST00000556767 CAMTA1Q9Y6Y1 1673 aa15.68■□□□□ 0.1
CCDC88C-212ENST00000556767 CSB-PGBD3P0DP91 1061 aa15.68■□□□□ 0.1
CCDC88C-212ENST00000556767 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
CCDC88C-212ENST00000556767 LTN1O94822 1766 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms