RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	FMN2	Q9NZ56	1722 aa		13.05	□□□□□ -0.32
SYNE2-222	ENST00000556725	FAM83G	A6ND36	823 aa		13.04	□□□□□ -0.32
SYNE2-222	ENST00000556725	CCDC144A	A2RUR9	1427 aa		13.04	□□□□□ -0.32
SYNE2-222	ENST00000556725	RRBP1	Q9P2E9	1410 aa	Known RBP	13.04	□□□□□ -0.32
SYNE2-222	ENST00000556725	LRP5	O75197	1615 aa		13.03	□□□□□ -0.32
SYNE2-222	ENST00000556725	HRC	P23327	699 aa		13.03	□□□□□ -0.32
SYNE2-222	ENST00000556725	LMOD2	Q6P5Q4	547 aa		13.03	□□□□□ -0.32
SYNE2-222	ENST00000556725	PHF8	Q9UPP1	1060 aa		13.03	□□□□□ -0.32
SYNE2-222	ENST00000556725	PLCH1	Q4KWH8	1693 aa		13.02	□□□□□ -0.32
SYNE2-222	ENST00000556725	SSUH2	Q9Y2M2	353 aa		13.02	□□□□□ -0.33
SYNE2-222	ENST00000556725	TNS3	Q68CZ2	1445 aa		13.02	□□□□□ -0.33
SYNE2-222	ENST00000556725	KIF1A	Q12756	1690 aa		13.02	□□□□□ -0.33
SYNE2-222	ENST00000556725		A0A0G2JS52	829 aa		13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	MYT1	Q01538	1121 aa		13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	EN1	Q05925	392 aa	Predicted RBP	13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	PSME1	Q06323	249 aa		13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	FAM98C	Q17RN3	349 aa	Known RBP	13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	FAM182B	Q5T319	152 aa		13.01	□□□□□ -0.33
SYNE2-222	ENST00000556725	KNDC1	Q76NI1	1749 aa		13	□□□□□ -0.33
SYNE2-222	ENST00000556725	NWD2	Q9ULI1	1742 aa		13	□□□□□ -0.33
SYNE2-222	ENST00000556725	SPATA31E1	Q6ZUB1	1445 aa		13	□□□□□ -0.33
SYNE2-222	ENST00000556725	YTHDC2	Q9H6S0	1430 aa	Known RBP	13	□□□□□ -0.33
SYNE2-222	ENST00000556725	BAG6	P46379	1132 aa		13	□□□□□ -0.33
SYNE2-222	ENST00000556725	PMFBP1	Q8TBY8	1022 aa		13	□□□□□ -0.33
SYNE2-222	ENST00000556725	IFT172	Q9UG01	1749 aa		12.99	□□□□□ -0.33
SYNE2-222	ENST00000556725	SAFB2	Q14151	953 aa	Known RBP eCLIP	12.99	□□□□□ -0.33
SYNE2-222	ENST00000556725	ABCA3	Q99758	1704 aa		12.99	□□□□□ -0.33
SYNE2-222	ENST00000556725	SBNO1	A3KN83	1393 aa		12.98	□□□□□ -0.33
SYNE2-222	ENST00000556725	ANKRD30B	Q9BXX2	1392 aa		12.98	□□□□□ -0.33
SYNE2-222	ENST00000556725	SIRT1	Q96EB6	747 aa		12.98	□□□□□ -0.33
SYNE2-222	ENST00000556725	BTG4	Q9NY30	223 aa		12.98	□□□□□ -0.33
SYNE2-222	ENST00000556725	PIK3C2G	O75747	1445 aa		12.97	□□□□□ -0.33
SYNE2-222	ENST00000556725	R3HDM1	Q15032	1099 aa	Known RBP	12.97	□□□□□ -0.33
SYNE2-222	ENST00000556725	CFAP70	Q5T0N1	1121 aa		12.97	□□□□□ -0.33
SYNE2-222	ENST00000556725	C14orf93	Q9H972	538 aa	Known RBP	12.97	□□□□□ -0.33
SYNE2-222	ENST00000556725	NRXN1	Q9ULB1	1477 aa		12.97	□□□□□ -0.33
SYNE2-222	ENST00000556725	PRAM1	Q96QH2	718 aa		12.96	□□□□□ -0.33
SYNE2-222	ENST00000556725	NRAP	Q86VF7	1730 aa		12.96	□□□□□ -0.34
SYNE2-222	ENST00000556725	ARHGEF10	O15013	1369 aa		12.95	□□□□□ -0.34
SYNE2-222	ENST00000556725	EZH2	Q15910	746 aa	Known RBP	12.95	□□□□□ -0.34
SYNE2-222	ENST00000556725	MKRN4P	Q13434	485 aa	Predicted RBP	12.94	□□□□□ -0.34
SYNE2-222	ENST00000556725	MPHOSPH9	Q99550	1183 aa		12.94	□□□□□ -0.34
SYNE2-222	ENST00000556725	ZNF692	Q9BU19	519 aa	Predicted RBP	12.93	□□□□□ -0.34
SYNE2-222	ENST00000556725	DHX57	Q6P158	1386 aa	Known RBP	12.93	□□□□□ -0.34
SYNE2-222	ENST00000556725	SPATA31A5	Q5VU36	1347 aa		12.92	□□□□□ -0.34
SYNE2-222	ENST00000556725	SPATA31A7	Q8IWB4	1347 aa		12.92	□□□□□ -0.34
SYNE2-222	ENST00000556725	HIRIP3	Q9BW71	556 aa	Predicted RBP	12.92	□□□□□ -0.34
SYNE2-222	ENST00000556725	RGPD1	P0DJD0	1748 aa		12.91	□□□□□ -0.34
SYNE2-222	ENST00000556725	TRPM3	Q9HCF6	1732 aa	Predicted RBP	12.91	□□□□□ -0.34
SYNE2-222	ENST00000556725	POGK	Q9P215	609 aa		12.91	□□□□□ -0.34
SYNE2-222	ENST00000556725	COL14A1	Q05707	1796 aa	Known RBP	12.91	□□□□□ -0.34
SYNE2-222	ENST00000556725	PRR36	Q9H6K5	1346 aa		12.9	□□□□□ -0.34
SYNE2-222	ENST00000556725	TRIM37	O94972	964 aa		12.9	□□□□□ -0.34
SYNE2-222	ENST00000556725	CAMKK2	Q96RR4	588 aa		12.9	□□□□□ -0.34
SYNE2-222	ENST00000556725	TNS1	Q9HBL0	1735 aa	Known RBP	12.9	□□□□□ -0.34
SYNE2-222	ENST00000556725	ALS2	Q96Q42	1657 aa		12.89	□□□□□ -0.35
SYNE2-222	ENST00000556725	CHADL	Q6NUI6	762 aa		12.89	□□□□□ -0.35
SYNE2-222	ENST00000556725	ACIN1	Q9UKV3	1341 aa	Known RBP	12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	PAK3	O75914	559 aa	Predicted RBP	12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	CHRNA2	Q15822	529 aa		12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	TRAK1	Q9UPV9	953 aa		12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	THSD7A	Q9UPZ6	1657 aa		12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	DISP2	A7MBM2	1401 aa		12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	ANKAR	Q7Z5J8	1434 aa		12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	MINK1	Q8N4C8	1332 aa	Predicted RBP	12.88	□□□□□ -0.35
SYNE2-222	ENST00000556725	GPRASP1	Q5JY77	1395 aa		12.87	□□□□□ -0.35
SYNE2-222	ENST00000556725	APBA3	O96018	575 aa		12.87	□□□□□ -0.35
SYNE2-222	ENST00000556725	PRDM11	Q9NQV5	511 aa		12.87	□□□□□ -0.35
SYNE2-222	ENST00000556725	SPATA31A1	Q5TZJ5	1347 aa		12.87	□□□□□ -0.35
SYNE2-222	ENST00000556725	CRYBG1	Q9Y4K1	1723 aa		12.86	□□□□□ -0.35
SYNE2-222	ENST00000556725	STRN4	Q9NRL3	753 aa		12.86	□□□□□ -0.35
SYNE2-222	ENST00000556725	DLC1	Q96QB1	1528 aa		12.85	□□□□□ -0.35
SYNE2-222	ENST00000556725	FAM196A	Q6ZSG2	479 aa		12.85	□□□□□ -0.35
SYNE2-222	ENST00000556725	NGDN	Q8NEJ9	315 aa	Known RBP	12.85	□□□□□ -0.35
SYNE2-222	ENST00000556725	KIAA0232	Q92628	1395 aa		12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	WASL	O00401	505 aa	Predicted RBP	12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	POTEI	P0CG38	1075 aa		12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	YY1	P25490	414 aa		12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	ZC3H6	P61129	1189 aa	Known RBP	12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	USP35	Q9P2H5	1018 aa		12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	ADGRB2	O60241	1585 aa		12.84	□□□□□ -0.35
SYNE2-222	ENST00000556725	NUTM2G	Q5VZR2	741 aa		12.83	□□□□□ -0.36
SYNE2-222	ENST00000556725	ADGRB1	O14514	1584 aa		12.82	□□□□□ -0.36
SYNE2-222	ENST00000556725	TULP4	Q9NRJ4	1543 aa		12.82	□□□□□ -0.36
SYNE2-222	ENST00000556725	KDM2A	Q9Y2K7	1162 aa		12.81	□□□□□ -0.36
SYNE2-222	ENST00000556725	PRR29	P0C7W0	189 aa		12.8	□□□□□ -0.36
SYNE2-222	ENST00000556725	EVA1C	P58658	441 aa		12.8	□□□□□ -0.36
SYNE2-222	ENST00000556725	PDE3B	Q13370	1112 aa		12.8	□□□□□ -0.36
SYNE2-222	ENST00000556725	RREB1	Q92766	1687 aa		12.8	□□□□□ -0.36
SYNE2-222	ENST00000556725	NUP188	Q5SRE5	1749 aa		12.79	□□□□□ -0.36
SYNE2-222	ENST00000556725	LARP1	Q6PKG0	1096 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-222	ENST00000556725	BARGIN	Q6ZT62	677 aa		12.79	□□□□□ -0.36
SYNE2-222	ENST00000556725	NUDT16	Q96DE0	195 aa	Known RBP	12.79	□□□□□ -0.36
SYNE2-222	ENST00000556725	PARD3	Q8TEW0	1356 aa		12.79	□□□□□ -0.36
SYNE2-222	ENST00000556725	PHRF1	Q9P1Y6	1649 aa	Known RBP	12.78	□□□□□ -0.36
SYNE2-222	ENST00000556725	CLCN6	P51797	869 aa		12.78	□□□□□ -0.36
SYNE2-222	ENST00000556725	NBPF8	Q3BBV2	869 aa		12.78	□□□□□ -0.36
SYNE2-222	ENST00000556725	NBPF14	Q5TI25	921 aa		12.78	□□□□□ -0.36
SYNE2-222	ENST00000556725	EIF3A	Q14152	1382 aa	Known RBP	12.78	□□□□□ -0.36
SYNE2-222	ENST00000556725	CAMTA1	Q9Y6Y1	1673 aa		12.77	□□□□□ -0.36

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