RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 PLEKHF1Q96S99 279 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 PRR36Q9H6K5 1346 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 FANCIQ9NVI1 1328 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 AKAP12Q02952 1782 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 PLEKHG1Q9ULL1 1385 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 PTPRUQ92729 1446 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 NME9Q86XW9 330 aa13.22□□□□□ -0.29
TMEM260-211ENST00000556648 NUDT16Q96DE0 195 aaKnown RBP13.22□□□□□ -0.29
TMEM260-211ENST00000556648 ITSN1Q15811 1721 aa13.21□□□□□ -0.29
TMEM260-211ENST00000556648 HDGFP51858 240 aaKnown RBP13.21□□□□□ -0.29
TMEM260-211ENST00000556648 PNPLA6Q8IY17 1366 aa13.21□□□□□ -0.3
TMEM260-211ENST00000556648 EDC4Q6P2E9 1401 aaKnown RBP13.21□□□□□ -0.3
TMEM260-211ENST00000556648 LRRC7Q96NW7 1537 aa13.2□□□□□ -0.3
TMEM260-211ENST00000556648 SLC26A8Q96RN1 970 aa13.2□□□□□ -0.3
TMEM260-211ENST00000556648 MAP2P11137 1827 aaKnown RBP13.2□□□□□ -0.3
TMEM260-211ENST00000556648 CCDC27Q2M243 656 aa13.19□□□□□ -0.3
TMEM260-211ENST00000556648 WDR63Q8IWG1 891 aa13.19□□□□□ -0.3
TMEM260-211ENST00000556648 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.19□□□□□ -0.3
TMEM260-211ENST00000556648 SIRT1Q96EB6 747 aa13.19□□□□□ -0.3
TMEM260-211ENST00000556648 POLKQ9UBT6 870 aa13.19□□□□□ -0.3
TMEM260-211ENST00000556648 TOPAZ1Q8N9V7 1692 aa13.19□□□□□ -0.3
TMEM260-211ENST00000556648 PPM1GO15355 546 aaPredicted RBP13.18□□□□□ -0.3
TMEM260-211ENST00000556648 DIAPH1O60610 1272 aaKnown RBP13.18□□□□□ -0.3
TMEM260-211ENST00000556648 KDM2BQ8NHM5 1336 aa13.18□□□□□ -0.3
TMEM260-211ENST00000556648 ARHGAP23Q9P227 1491 aa13.18□□□□□ -0.3
TMEM260-211ENST00000556648 SLIT1O75093 1534 aa13.18□□□□□ -0.3
TMEM260-211ENST00000556648 TRHP20396 242 aaPredicted RBP13.18□□□□□ -0.3
TMEM260-211ENST00000556648 NUTM2FA1L443 756 aa13.17□□□□□ -0.3
TMEM260-211ENST00000556648 TMPOP42166 694 aaKnown RBP13.17□□□□□ -0.3
TMEM260-211ENST00000556648 TRIM35Q9UPQ4 493 aa13.17□□□□□ -0.3
TMEM260-211ENST00000556648 EMILIN1Q9Y6C2 1016 aa13.17□□□□□ -0.3
TMEM260-211ENST00000556648 NRKQ7Z2Y5 1582 aa13.17□□□□□ -0.3
TMEM260-211ENST00000556648 TNNQ9UQP3 1299 aa13.17□□□□□ -0.3
TMEM260-211ENST00000556648 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
TMEM260-211ENST00000556648 PANK1Q8TE04 598 aa13.16□□□□□ -0.3
TMEM260-211ENST00000556648 TSR2Q969E8 191 aaKnown RBP13.16□□□□□ -0.3
TMEM260-211ENST00000556648 BCL2L13Q9BXK5 485 aa13.16□□□□□ -0.3
TMEM260-211ENST00000556648 CCDC61Q9Y6R9 512 aa13.16□□□□□ -0.3
TMEM260-211ENST00000556648 MAPK8IP3Q9UPT6 1336 aa13.15□□□□□ -0.3
TMEM260-211ENST00000556648 TCERG1O14776 1098 aaKnown RBP13.14□□□□□ -0.31
TMEM260-211ENST00000556648 RRS1Q15050 365 aaKnown RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 FRAT1Q92837 279 aaPredicted RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 RSPH6AQ9H0K4 717 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 MYH16Q9H6N6 1097 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 EID1Q9Y6B2 187 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 CDK12Q9NYV4 1490 aaPredicted RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 HMOX1P09601 288 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 CANXP27824 592 aaKnown RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 PRKAR2BP31323 418 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 COG6Q9Y2V7 657 aa13.13□□□□□ -0.31
TMEM260-211ENST00000556648 RIMS1Q86UR5 1692 aaKnown RBP13.13□□□□□ -0.31
TMEM260-211ENST00000556648 RIPK4P57078 832 aa13.12□□□□□ -0.31
TMEM260-211ENST00000556648 AMOTL2Q9Y2J4 779 aa13.12□□□□□ -0.31
TMEM260-211ENST00000556648 RLBP1P12271 317 aa13.12□□□□□ -0.31
TMEM260-211ENST00000556648 IL13P35225 146 aa13.12□□□□□ -0.31
TMEM260-211ENST00000556648 CENPQQ7L2Z9 268 aaPredicted RBP13.12□□□□□ -0.31
TMEM260-211ENST00000556648 ANP32EQ9BTT0 268 aa13.12□□□□□ -0.31
TMEM260-211ENST00000556648 AATKQ6ZMQ8 1374 aa13.11□□□□□ -0.31
TMEM260-211ENST00000556648 XRN1Q8IZH2 1706 aaKnown RBP13.11□□□□□ -0.31
TMEM260-211ENST00000556648 COG3Q96JB2 828 aa13.11□□□□□ -0.31
TMEM260-211ENST00000556648 ACEP12821 1306 aa13.11□□□□□ -0.31
TMEM260-211ENST00000556648 DIP2AQ14689 1571 aa13.1□□□□□ -0.31
TMEM260-211ENST00000556648 EXOSC9Q06265 439 aaKnown RBP13.1□□□□□ -0.31
TMEM260-211ENST00000556648 PDE3AQ14432 1141 aa13.1□□□□□ -0.31
TMEM260-211ENST00000556648 PHACTR3Q96KR7 559 aa13.1□□□□□ -0.31
TMEM260-211ENST00000556648 RGPD8O14715 1765 aaPredicted RBP13.1□□□□□ -0.31
TMEM260-211ENST00000556648 CEP170BQ9Y4F5 1589 aaPredicted RBP13.1□□□□□ -0.31
TMEM260-211ENST00000556648 PTCH1Q13635 1447 aa13.1□□□□□ -0.31
TMEM260-211ENST00000556648 PDE4AP27815 886 aa13.1□□□□□ -0.31
TMEM260-211ENST00000556648 TTC21BQ7Z4L5 1316 aa13.09□□□□□ -0.31
TMEM260-211ENST00000556648 USP6P35125 1406 aa13.09□□□□□ -0.31
TMEM260-211ENST00000556648 PEAK1Q9H792 1746 aa13.09□□□□□ -0.31
TMEM260-211ENST00000556648 FCHSD2O94868 740 aa13.09□□□□□ -0.31
TMEM260-211ENST00000556648 IGHDP01880 384 aa13.09□□□□□ -0.31
TMEM260-211ENST00000556648 MS4A1P11836 297 aa13.08□□□□□ -0.31
TMEM260-211ENST00000556648 THUMPD2Q9BTF0 503 aaKnown RBP13.08□□□□□ -0.31
TMEM260-211ENST00000556648 TBX22Q9Y458 520 aa13.08□□□□□ -0.31
TMEM260-211ENST00000556648 NALCNQ8IZF0 1738 aa13.08□□□□□ -0.32
TMEM260-211ENST00000556648 OVOS2A0A0J9YW53 1432 aa13.08□□□□□ -0.32
TMEM260-211ENST00000556648 OVOS2Q6IE36 1432 aa13.08□□□□□ -0.32
TMEM260-211ENST00000556648 PLEKHG3A1L390 1219 aa13.08□□□□□ -0.32
TMEM260-211ENST00000556648 THEMISQ8N1K5 641 aaPredicted RBP13.08□□□□□ -0.32
TMEM260-211ENST00000556648 CLUAP1Q96AJ1 413 aa13.08□□□□□ -0.32
TMEM260-211ENST00000556648 ZNF692Q9BU19 519 aaPredicted RBP13.07□□□□□ -0.32
TMEM260-211ENST00000556648 BACH2Q9BYV9 841 aa13.07□□□□□ -0.32
TMEM260-211ENST00000556648 DLG5Q8TDM6 1919 aa13.07□□□□□ -0.32
TMEM260-211ENST00000556648 PMFBP1Q8TBY8 1022 aa13.06□□□□□ -0.32
TMEM260-211ENST00000556648 IL16Q14005 1332 aa13.06□□□□□ -0.32
TMEM260-211ENST00000556648 NFE2L2Q16236 605 aa13.06□□□□□ -0.32
TMEM260-211ENST00000556648 SSH2Q76I76 1423 aa13.06□□□□□ -0.32
TMEM260-211ENST00000556648 NPM2Q86SE8 214 aaKnown RBP13.05□□□□□ -0.32
TMEM260-211ENST00000556648 PNNQ9H307 717 aaKnown RBP13.05□□□□□ -0.32
TMEM260-211ENST00000556648 SOX12O15370 315 aa13.05□□□□□ -0.32
TMEM260-211ENST00000556648 KCNA6P17658 529 aa13.05□□□□□ -0.32
TMEM260-211ENST00000556648 SSH1Q8WYL5 1049 aa13.05□□□□□ -0.32
TMEM260-211ENST00000556648 SMC4Q9NTJ3 1288 aa13.05□□□□□ -0.32
TMEM260-211ENST00000556648 RGS3P49796 1198 aa13.04□□□□□ -0.32
TMEM260-211ENST00000556648 LAS1LQ9Y4W2 734 aaKnown RBP13.04□□□□□ -0.32
TMEM260-211ENST00000556648 PAK3O75914 559 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms