RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 USP32Q8NFA0 1604 aa15.13■□□□□ 0.01
SCFD1-220ENST00000556486 SLIT2O94813 1529 aa15.12■□□□□ 0.01
SCFD1-220ENST00000556486 VGFO15240 615 aaPredicted RBP15.12■□□□□ 0.01
SCFD1-220ENST00000556486 WAPLQ7Z5K2 1190 aa15.12■□□□□ 0.01
SCFD1-220ENST00000556486 CCDC9Q9Y3X0 531 aaKnown RBP15.12■□□□□ 0.01
SCFD1-220ENST00000556486 PLCH1Q4KWH8 1693 aa15.12■□□□□ 0.01
SCFD1-220ENST00000556486 PLCD3Q8N3E9 789 aa15.11■□□□□ 0.01
SCFD1-220ENST00000556486 SPRYD3Q8NCJ5 442 aa15.11■□□□□ 0.01
SCFD1-220ENST00000556486 CABLES1Q8TDN4 633 aa15.11■□□□□ 0.01
SCFD1-220ENST00000556486 PRAG1Q86YV5 1406 aa15.1■□□□□ 0.01
SCFD1-220ENST00000556486 A0A0G2JS52 829 aa15.1■□□□□ 0.01
SCFD1-220ENST00000556486 MYT1Q01538 1121 aa15.1■□□□□ 0.01
SCFD1-220ENST00000556486 PLEKHH1Q9ULM0 1364 aa15.1■□□□□ 0.01
SCFD1-220ENST00000556486 RGPD8O14715 1765 aaPredicted RBP15.09■□□□□ 0.01
SCFD1-220ENST00000556486 PRR29P0C7W0 189 aa15.08■□□□□ 0
SCFD1-220ENST00000556486 SPATA31A3Q5VYP0 1347 aa15.08■□□□□ 0
SCFD1-220ENST00000556486 FMN2Q9NZ56 1722 aa15.08■□□□□ 0
SCFD1-220ENST00000556486 ABCA3Q99758 1704 aa15.07■□□□□ 0
SCFD1-220ENST00000556486 HRCP23327 699 aa15.07■□□□□ 0
SCFD1-220ENST00000556486 LMOD2Q6P5Q4 547 aa15.07■□□□□ 0
SCFD1-220ENST00000556486 FAM182BQ5T319 152 aa15.06■□□□□ 0
SCFD1-220ENST00000556486 TMEM132EQ6IEE7 984 aa15.06■□□□□ 0
SCFD1-220ENST00000556486 KRT27Q7Z3Y8 459 aa15.06■□□□□ 0
SCFD1-220ENST00000556486 LRPPRCP42704 1394 aaKnown RBP15.06■□□□□ 0
SCFD1-220ENST00000556486 KRT28Q7Z3Y7 464 aa15.05■□□□□ -0
SCFD1-220ENST00000556486 TSHZ2Q9NRE2 1034 aa15.05■□□□□ -0
SCFD1-220ENST00000556486 ADGRF5Q8IZF2 1346 aa15.05■□□□□ -0
SCFD1-220ENST00000556486 KIF1AQ12756 1690 aa15.05■□□□□ -0
SCFD1-220ENST00000556486 IFT172Q9UG01 1749 aa15.04■□□□□ -0
SCFD1-220ENST00000556486 RPGRIP1LQ68CZ1 1315 aa15.04■□□□□ -0
SCFD1-220ENST00000556486 VPS72Q15906 364 aa15.04■□□□□ -0
SCFD1-220ENST00000556486 NWD2Q9ULI1 1742 aa15.03■□□□□ -0
SCFD1-220ENST00000556486 EN1Q05925 392 aaPredicted RBP15.03■□□□□ -0
SCFD1-220ENST00000556486 R3HDM1Q15032 1099 aaKnown RBP15.03■□□□□ -0
SCFD1-220ENST00000556486 CCDC144AA2RUR9 1427 aa15.02■□□□□ -0
SCFD1-220ENST00000556486 TNS3Q68CZ2 1445 aa15.02■□□□□ -0
SCFD1-220ENST00000556486 PRKAR2AP13861 404 aaKnown RBP15.02■□□□□ -0
SCFD1-220ENST00000556486 BAG6P46379 1132 aa15.02■□□□□ -0
SCFD1-220ENST00000556486 FAM98CQ17RN3 349 aaKnown RBP15.02■□□□□ -0
SCFD1-220ENST00000556486 RGL3Q3MIN7 710 aa15.02■□□□□ -0
SCFD1-220ENST00000556486 MIER1Q8N108 512 aa15.01□□□□□ -0.01
SCFD1-220ENST00000556486 KNDC1Q76NI1 1749 aa15□□□□□ -0.01
SCFD1-220ENST00000556486 NRAPQ86VF7 1730 aa15□□□□□ -0.01
SCFD1-220ENST00000556486 FAM83GA6ND36 823 aa14.99□□□□□ -0.01
SCFD1-220ENST00000556486 SAFB2Q14151 953 aaKnown RBP eCLIP14.99□□□□□ -0.01
SCFD1-220ENST00000556486 RGPD1P0DJD0 1748 aa14.99□□□□□ -0.01
SCFD1-220ENST00000556486 TECPR2O15040 1411 aa14.99□□□□□ -0.01
SCFD1-220ENST00000556486 PHF8Q9UPP1 1060 aa14.98□□□□□ -0.01
SCFD1-220ENST00000556486 TNS1Q9HBL0 1735 aaKnown RBP14.97□□□□□ -0.01
SCFD1-220ENST00000556486 ONECUT3O60422 494 aaPredicted RBP14.97□□□□□ -0.01
SCFD1-220ENST00000556486 PMFBP1Q8TBY8 1022 aa14.96□□□□□ -0.01
SCFD1-220ENST00000556486 BTG4Q9NY30 223 aa14.96□□□□□ -0.01
SCFD1-220ENST00000556486 SPATA31E1Q6ZUB1 1445 aa14.95□□□□□ -0.02
SCFD1-220ENST00000556486 YTHDC2Q9H6S0 1430 aaKnown RBP14.95□□□□□ -0.02
SCFD1-220ENST00000556486 PSME1Q06323 249 aa14.95□□□□□ -0.02
SCFD1-220ENST00000556486 EZH2Q15910 746 aaKnown RBP14.95□□□□□ -0.02
SCFD1-220ENST00000556486 ABCC11Q96J66 1382 aa14.94□□□□□ -0.02
SCFD1-220ENST00000556486 CHADLQ6NUI6 762 aa14.93□□□□□ -0.02
SCFD1-220ENST00000556486 CIZ1Q9ULV3 898 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-220ENST00000556486 NRXN1Q9ULB1 1477 aa14.93□□□□□ -0.02
SCFD1-220ENST00000556486 ACIN1Q9UKV3 1341 aaKnown RBP14.92□□□□□ -0.02
SCFD1-220ENST00000556486 ANKRD30BQ9BXX2 1392 aa14.92□□□□□ -0.02
SCFD1-220ENST00000556486 COL14A1Q05707 1796 aaKnown RBP14.92□□□□□ -0.02
SCFD1-220ENST00000556486 TRPM3Q9HCF6 1732 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-220ENST00000556486 PIK3C2GO75747 1445 aa14.92□□□□□ -0.02
SCFD1-220ENST00000556486 SBNO1A3KN83 1393 aa14.91□□□□□ -0.02
SCFD1-220ENST00000556486 ARHGEF10O15013 1369 aa14.91□□□□□ -0.02
SCFD1-220ENST00000556486 THSD7AQ9UPZ6 1657 aa14.9□□□□□ -0.02
SCFD1-220ENST00000556486 TRIM37O94972 964 aa14.9□□□□□ -0.02
SCFD1-220ENST00000556486 YY1P25490 414 aa14.9□□□□□ -0.02
SCFD1-220ENST00000556486 PRAM1Q96QH2 718 aa14.89□□□□□ -0.03
SCFD1-220ENST00000556486 MPHOSPH9Q99550 1183 aa14.89□□□□□ -0.03
SCFD1-220ENST00000556486 HIRIP3Q9BW71 556 aaPredicted RBP14.89□□□□□ -0.03
SCFD1-220ENST00000556486 ALS2Q96Q42 1657 aa14.89□□□□□ -0.03
SCFD1-220ENST00000556486 SPATA31A5Q5VU36 1347 aa14.88□□□□□ -0.03
SCFD1-220ENST00000556486 SPATA31A7Q8IWB4 1347 aa14.88□□□□□ -0.03
SCFD1-220ENST00000556486 CRYBG1Q9Y4K1 1723 aa14.87□□□□□ -0.03
SCFD1-220ENST00000556486 ADGRB2O60241 1585 aa14.87□□□□□ -0.03
SCFD1-220ENST00000556486 CFAP70Q5T0N1 1121 aa14.87□□□□□ -0.03
SCFD1-220ENST00000556486 NUP188Q5SRE5 1749 aa14.86□□□□□ -0.03
SCFD1-220ENST00000556486 DISP2A7MBM2 1401 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 PAK3O75914 559 aaPredicted RBP14.85□□□□□ -0.03
SCFD1-220ENST00000556486 APBA3O96018 575 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 CHRNA2Q15822 529 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 CAMKK2Q96RR4 588 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 STRN4Q9NRL3 753 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 USP35Q9P2H5 1018 aa14.85□□□□□ -0.03
SCFD1-220ENST00000556486 RREB1Q92766 1687 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 CAMTA1Q9Y6Y1 1673 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 SIRT1Q96EB6 747 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 PRDM11Q9NQV5 511 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 CREBZFQ9NS37 354 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 POGKQ9P215 609 aa14.84□□□□□ -0.03
SCFD1-220ENST00000556486 ZBTB47Q9UFB7 747 aaPredicted RBP14.84□□□□□ -0.03
SCFD1-220ENST00000556486 MINK1Q8N4C8 1332 aaPredicted RBP14.83□□□□□ -0.04
SCFD1-220ENST00000556486 DHX57Q6P158 1386 aaKnown RBP14.83□□□□□ -0.04
SCFD1-220ENST00000556486 NUTM2GQ5VZR2 741 aa14.82□□□□□ -0.04
SCFD1-220ENST00000556486 C14orf93Q9H972 538 aaKnown RBP14.82□□□□□ -0.04
SCFD1-220ENST00000556486 PRR36Q9H6K5 1346 aa14.82□□□□□ -0.04
SCFD1-220ENST00000556486 HAX1O00165 279 aa14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms