RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SH3BP2P78314 561 aa12.02□□□□□ -0.49
PRPF39-209ENST00000556353 LINC01559Q495D7 138 aa12.02□□□□□ -0.49
PRPF39-209ENST00000556353 EHBP1Q8NDI1 1231 aa12.02□□□□□ -0.49
PRPF39-209ENST00000556353 BAP1Q92560 729 aa12.02□□□□□ -0.49
PRPF39-209ENST00000556353 F12P00748 615 aaPredicted RBP12.01□□□□□ -0.49
PRPF39-209ENST00000556353 PROCA1Q8NCQ7 364 aaPredicted RBP12.01□□□□□ -0.49
PRPF39-209ENST00000556353 MAP10Q9P2G4 905 aa12.01□□□□□ -0.49
PRPF39-209ENST00000556353 GNL3Q9BVP2 549 aaKnown RBP eCLIP12□□□□□ -0.49
PRPF39-209ENST00000556353 ZNF511Q8NB15 262 aa11.99□□□□□ -0.49
PRPF39-209ENST00000556353 SMPD1P17405 629 aa11.98□□□□□ -0.49
PRPF39-209ENST00000556353 BRPF1P55201 1214 aaPredicted RBP11.98□□□□□ -0.49
PRPF39-209ENST00000556353 AVPP01185 164 aa11.97□□□□□ -0.49
PRPF39-209ENST00000556353 J3QL48 77 aa11.96□□□□□ -0.49
PRPF39-209ENST00000556353 IL27Q8NEV9 243 aa11.96□□□□□ -0.49
PRPF39-209ENST00000556353 CTDSPL2Q05D32 466 aa11.95□□□□□ -0.5
PRPF39-209ENST00000556353 PPP2R2DQ66LE6 453 aa11.95□□□□□ -0.5
PRPF39-209ENST00000556353 CRIPAKQ8N1N5 446 aa11.95□□□□□ -0.5
PRPF39-209ENST00000556353 AAASQ9NRG9 546 aa11.95□□□□□ -0.5
PRPF39-209ENST00000556353 ST8SIA5O15466 376 aa11.94□□□□□ -0.5
PRPF39-209ENST00000556353 SIAH2O43255 324 aa11.94□□□□□ -0.5
PRPF39-209ENST00000556353 ALDH1A1P00352 501 aa11.94□□□□□ -0.5
PRPF39-209ENST00000556353 CTC1Q2NKJ3 1217 aa11.94□□□□□ -0.5
PRPF39-209ENST00000556353 GOPCQ9HD26 462 aa11.94□□□□□ -0.5
PRPF39-209ENST00000556353 VARSP26640 1264 aaKnown RBP11.93□□□□□ -0.5
PRPF39-209ENST00000556353 FBXO31Q5XUX0 539 aaPredicted RBP11.93□□□□□ -0.5
PRPF39-209ENST00000556353 ARMC2Q8NEN0 867 aa11.93□□□□□ -0.5
PRPF39-209ENST00000556353 PCMTD1Q96MG8 357 aaPredicted RBP11.93□□□□□ -0.5
PRPF39-209ENST00000556353 AXIN1O15169 862 aa11.92□□□□□ -0.5
PRPF39-209ENST00000556353 ZNF787Q6DD87 383 aa11.91□□□□□ -0.5
PRPF39-209ENST00000556353 AP1G2O75843 785 aa11.9□□□□□ -0.5
PRPF39-209ENST00000556353 SMCPP49901 116 aaPredicted RBP11.9□□□□□ -0.5
PRPF39-209ENST00000556353 FOXJ1Q92949 421 aa11.9□□□□□ -0.5
PRPF39-209ENST00000556353 WASF2Q9Y6W5 498 aa11.9□□□□□ -0.5
PRPF39-209ENST00000556353 AGERQ15109 404 aa11.89□□□□□ -0.51
PRPF39-209ENST00000556353 NBPF14Q5TI25 921 aa11.89□□□□□ -0.51
PRPF39-209ENST00000556353 FAM174AQ8TBP5 190 aa11.89□□□□□ -0.51
PRPF39-209ENST00000556353 HPS1Q92902 700 aa11.89□□□□□ -0.51
PRPF39-209ENST00000556353 BPHLQ86WA6 291 aaPredicted RBP11.88□□□□□ -0.51
PRPF39-209ENST00000556353 LRRN4Q8WUT4 740 aa11.88□□□□□ -0.51
PRPF39-209ENST00000556353 TLL2Q9Y6L7 1015 aa11.87□□□□□ -0.51
PRPF39-209ENST00000556353 RFC5P40937 340 aa11.86□□□□□ -0.51
PRPF39-209ENST00000556353 MPNDQ8N594 471 aa11.86□□□□□ -0.51
PRPF39-209ENST00000556353 GPKOWQ92917 476 aaPredicted RBP eCLIP11.84□□□□□ -0.514e-12■■■■■ 28.2
PRPF39-209ENST00000556353 USP17L8P0C7I0 530 aa11.83□□□□□ -0.52
PRPF39-209ENST00000556353 C4orf48Q5BLP8 95 aa11.83□□□□□ -0.52
PRPF39-209ENST00000556353 DACH1Q9UI36 760 aa11.83□□□□□ -0.52
PRPF39-209ENST00000556353 ARID5BQ14865 1188 aa11.81□□□□□ -0.52
PRPF39-209ENST00000556353 NR6A1Q15406 480 aa11.81□□□□□ -0.52
PRPF39-209ENST00000556353 SH3BP5LQ7L8J4 393 aa11.81□□□□□ -0.52
PRPF39-209ENST00000556353 SH3RF1Q7Z6J0 888 aa11.81□□□□□ -0.52
PRPF39-209ENST00000556353 FKBPLQ9UIM3 349 aa11.81□□□□□ -0.52
PRPF39-209ENST00000556353 MAGEB6P1A0A0J9YX57 407 aa11.8□□□□□ -0.52
PRPF39-209ENST00000556353 POTECB2RU33 542 aa11.8□□□□□ -0.52
PRPF39-209ENST00000556353 PRKCSHP14314 528 aaPredicted RBP11.8□□□□□ -0.52
PRPF39-209ENST00000556353 TMEM259Q4ZIN3 620 aa11.8□□□□□ -0.52
PRPF39-209ENST00000556353 CDK15Q96Q40 435 aa11.8□□□□□ -0.52
PRPF39-209ENST00000556353 ADH1CP00326 375 aa11.78□□□□□ -0.52
PRPF39-209ENST00000556353 NNTQ13423 1086 aa11.78□□□□□ -0.52
PRPF39-209ENST00000556353 PDXDC2PQ6P474 469 aa11.78□□□□□ -0.52
PRPF39-209ENST00000556353 C1QTNF2Q9BXJ5 285 aa11.78□□□□□ -0.52
PRPF39-209ENST00000556353 ATP13A2Q9NQ11 1180 aa11.78□□□□□ -0.52
PRPF39-209ENST00000556353 ZC3H4Q9UPT8 1303 aaKnown RBP11.78□□□□□ -0.52
PRPF39-209ENST00000556353 PNMA1Q8ND90 353 aa11.77□□□□□ -0.53
PRPF39-209ENST00000556353 CARD14Q9BXL6 1004 aa11.77□□□□□ -0.53
PRPF39-209ENST00000556353 HMX1Q9NP08 348 aaPredicted RBP11.77□□□□□ -0.53
PRPF39-209ENST00000556353 GMPR2Q9P2T1 348 aaKnown RBP11.77□□□□□ -0.53
PRPF39-209ENST00000556353 CAPN5O15484 640 aaPredicted RBP11.76□□□□□ -0.53
PRPF39-209ENST00000556353 ARHGAP9Q9BRR9 750 aa11.75□□□□□ -0.53
PRPF39-209ENST00000556353 C11orf95C9JLR9 678 aaPredicted RBP11.74□□□□□ -0.53
PRPF39-209ENST00000556353 NR5A1Q13285 461 aa11.74□□□□□ -0.53
PRPF39-209ENST00000556353 TRMT44Q8IYL2 757 aaKnown RBP11.74□□□□□ -0.53
PRPF39-209ENST00000556353 EPS8L1Q8TE68 723 aa11.74□□□□□ -0.53
PRPF39-209ENST00000556353 MAP4K5Q9Y4K4 846 aa11.73□□□□□ -0.53
PRPF39-209ENST00000556353 GRM5P41594 1212 aa11.72□□□□□ -0.53
PRPF39-209ENST00000556353 ERFEQ4G0M1 354 aa11.72□□□□□ -0.53
PRPF39-209ENST00000556353 VASH1Q7L8A9 365 aaPredicted RBP11.72□□□□□ -0.53
PRPF39-209ENST00000556353 SENP2Q9HC62 589 aa11.72□□□□□ -0.53
PRPF39-209ENST00000556353 WDR4P57081 412 aaKnown RBP11.71□□□□□ -0.53
PRPF39-209ENST00000556353 PTK2Q05397 1052 aa11.71□□□□□ -0.53
PRPF39-209ENST00000556353 ZBTB33Q86T24 672 aa11.71□□□□□ -0.53
PRPF39-209ENST00000556353 GPSM3Q9Y4H4 160 aa11.7□□□□□ -0.54
PRPF39-209ENST00000556353 BMP1P13497 986 aa11.69□□□□□ -0.54
PRPF39-209ENST00000556353 TIMP2P16035 220 aa11.69□□□□□ -0.54
PRPF39-209ENST00000556353 FSHRP23945 695 aa11.69□□□□□ -0.54
PRPF39-209ENST00000556353 SLC10A4Q96EP9 437 aa11.69□□□□□ -0.54
PRPF39-209ENST00000556353 TRIM34Q9BYJ4 488 aa11.69□□□□□ -0.54
PRPF39-209ENST00000556353 NR3C2P08235 984 aa11.68□□□□□ -0.54
PRPF39-209ENST00000556353 KIFC2Q96AC6 838 aa11.68□□□□□ -0.54
PRPF39-209ENST00000556353 ZNF775Q96BV0 537 aaPredicted RBP11.68□□□□□ -0.54
PRPF39-209ENST00000556353 TRIM47Q96LD4 638 aa11.68□□□□□ -0.54
PRPF39-209ENST00000556353 ZIC2O95409 532 aaPredicted RBP11.67□□□□□ -0.54
PRPF39-209ENST00000556353 BANK1Q8NDB2 785 aa11.67□□□□□ -0.54
PRPF39-209ENST00000556353 KLF16Q9BXK1 252 aaPredicted RBP11.67□□□□□ -0.54
PRPF39-209ENST00000556353 CDV3Q9UKY7 258 aaKnown RBP11.67□□□□□ -0.54
PRPF39-209ENST00000556353 TRIM46Q7Z4K8 759 aa11.66□□□□□ -0.54
PRPF39-209ENST00000556353 ADAM32Q8TC27 787 aa11.65□□□□□ -0.54
PRPF39-209ENST00000556353 OCSTAMPQ9BR26 566 aa11.65□□□□□ -0.54
PRPF39-209ENST00000556353 SNRPBP14678 240 aaKnown RBP11.64□□□□□ -0.55
PRPF39-209ENST00000556353 ITPKCQ96DU7 683 aa11.64□□□□□ -0.55
PRPF39-209ENST00000556353 GJD4Q96KN9 370 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms