RNA–Protein interactions for RNA: ENST00000556220.5

ATXN3-236, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-236ENST00000556220 HCSTQ9UBK5 93 aa11.06□□□□□ -0.64
ATXN3-236ENST00000556220 VPS9D1Q9Y2B5 631 aa11.06□□□□□ -0.64
ATXN3-236ENST00000556220 JCADQ9P266 1359 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 ZNF772Q68DY9 489 aaPredicted RBP11.05□□□□□ -0.64
ATXN3-236ENST00000556220 RBM33Q96EV2 1170 aaKnown RBP11.05□□□□□ -0.64
ATXN3-236ENST00000556220 SLAIN2Q9P270 581 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 ERVK-7P63135 1459 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 NCOA2Q15596 1464 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 CCDC141Q6ZP82 1450 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 ARHGAP23Q9P227 1491 aa11.05□□□□□ -0.64
ATXN3-236ENST00000556220 TRIM52Q96A61 297 aa11.04□□□□□ -0.64
ATXN3-236ENST00000556220 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
ATXN3-236ENST00000556220 CEP162Q5TB80 1403 aa11.02□□□□□ -0.64
ATXN3-236ENST00000556220 RXRBP28702 533 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 ADAM33Q9BZ11 813 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 ABCC3O15438 1527 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 SLIT1O75093 1534 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 TIAM1Q13009 1591 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 TMEM2Q9UHN6 1383 aa11.02□□□□□ -0.65
ATXN3-236ENST00000556220 MEX3CQ5U5Q3 659 aaKnown RBP11.01□□□□□ -0.65
ATXN3-236ENST00000556220 SLC26A8Q96RN1 970 aa11.01□□□□□ -0.65
ATXN3-236ENST00000556220 SPATA31A6Q5VVP1 1343 aa11.01□□□□□ -0.65
ATXN3-236ENST00000556220 LRRC9Q6ZRR7 1453 aa11□□□□□ -0.65
ATXN3-236ENST00000556220 FBXW7Q969H0 707 aa11□□□□□ -0.65
ATXN3-236ENST00000556220 PCDHGA10Q9Y5H3 936 aa11□□□□□ -0.65
ATXN3-236ENST00000556220 SETD1AO15047 1707 aaKnown RBP11□□□□□ -0.65
ATXN3-236ENST00000556220 MSH6P52701 1360 aa11□□□□□ -0.65
ATXN3-236ENST00000556220 XIRP1Q702N8 1843 aaKnown RBP11□□□□□ -0.65
ATXN3-236ENST00000556220 ROBO1Q9Y6N7 1651 aa10.99□□□□□ -0.65
ATXN3-236ENST00000556220 PHF14O94880 888 aa10.99□□□□□ -0.65
ATXN3-236ENST00000556220 ZBED2Q9BTP6 218 aa10.99□□□□□ -0.65
ATXN3-236ENST00000556220 IDI1Q13907 227 aa10.98□□□□□ -0.65
ATXN3-236ENST00000556220 CAMSAP2Q08AD1 1489 aa10.98□□□□□ -0.65
ATXN3-236ENST00000556220 BHMG1C9JSJ3 638 aaPredicted RBP10.97□□□□□ -0.65
ATXN3-236ENST00000556220 TYW1BQ6NUM6 668 aa10.97□□□□□ -0.65
ATXN3-236ENST00000556220 ARHGAP31Q2M1Z3 1444 aa10.97□□□□□ -0.65
ATXN3-236ENST00000556220 PRDM15P57071 1507 aaPredicted RBP10.97□□□□□ -0.65
ATXN3-236ENST00000556220 MAP3K1Q13233 1512 aa10.97□□□□□ -0.65
ATXN3-236ENST00000556220 UBR1Q8IWV7 1749 aa10.97□□□□□ -0.65
ATXN3-236ENST00000556220 DPYSL4O14531 572 aa10.96□□□□□ -0.65
ATXN3-236ENST00000556220 KCTD12Q96CX2 325 aaKnown RBP10.96□□□□□ -0.65
ATXN3-236ENST00000556220 EHBP1L1Q8N3D4 1523 aa10.95□□□□□ -0.66
ATXN3-236ENST00000556220 FGD6Q6ZV73 1430 aa10.95□□□□□ -0.66
ATXN3-236ENST00000556220 LRP6O75581 1613 aa10.95□□□□□ -0.66
ATXN3-236ENST00000556220 CFAP65Q6ZU64 1925 aaKnown RBP10.94□□□□□ -0.66
ATXN3-236ENST00000556220 PPP1R3GB7ZBB8 358 aa10.94□□□□□ -0.66
ATXN3-236ENST00000556220 PAXIP1Q6ZW49 1069 aaPredicted RBP10.94□□□□□ -0.66
ATXN3-236ENST00000556220 BCANQ96GW7 911 aa10.94□□□□□ -0.66
ATXN3-236ENST00000556220 EPAS1Q99814 870 aa10.94□□□□□ -0.66
ATXN3-236ENST00000556220 TET3O43151 1660 aa10.93□□□□□ -0.66
ATXN3-236ENST00000556220 CFAP44Q96MT7 982 aa10.93□□□□□ -0.66
ATXN3-236ENST00000556220 ARHGEF5Q12774 1597 aa10.93□□□□□ -0.66
ATXN3-236ENST00000556220 NKTRP30414 1462 aaKnown RBP10.93□□□□□ -0.66
ATXN3-236ENST00000556220 CDK12Q9NYV4 1490 aaPredicted RBP10.93□□□□□ -0.66
ATXN3-236ENST00000556220 NBPF3Q9H094 633 aa10.92□□□□□ -0.66
ATXN3-236ENST00000556220 NUTM2BA6NNL0 878 aaPredicted RBP10.91□□□□□ -0.66
ATXN3-236ENST00000556220 NUTM2EB1AL46 878 aaPredicted RBP10.91□□□□□ -0.66
ATXN3-236ENST00000556220 NUTM2AQ8IVF1 878 aaPredicted RBP10.91□□□□□ -0.66
ATXN3-236ENST00000556220 MRPL50Q8N5N7 158 aaKnown RBP10.91□□□□□ -0.66
ATXN3-236ENST00000556220 C19orf44Q9H6X5 657 aa10.91□□□□□ -0.66
ATXN3-236ENST00000556220 PLA2G2EQ9NZK7 142 aa10.91□□□□□ -0.66
ATXN3-236ENST00000556220 PHLPP1O60346 1717 aa10.91□□□□□ -0.66
ATXN3-236ENST00000556220 NCOA3Q9Y6Q9 1424 aa10.91□□□□□ -0.66
ATXN3-236ENST00000556220 MROH1Q8NDA8 1641 aa10.91□□□□□ -0.66
ATXN3-236ENST00000556220 AFF2P51816 1311 aa10.9□□□□□ -0.66
ATXN3-236ENST00000556220 GOLGA8CPA6NN73 597 aa10.9□□□□□ -0.66
ATXN3-236ENST00000556220 RBM6P78332 1123 aaKnown RBP10.9□□□□□ -0.66
ATXN3-236ENST00000556220 QTRT2Q9H974 415 aaKnown RBP10.9□□□□□ -0.66
ATXN3-236ENST00000556220 SLC52A1Q9NWF4 448 aa10.9□□□□□ -0.66
ATXN3-236ENST00000556220 EFCAB6Q5THR3 1501 aa10.89□□□□□ -0.67
ATXN3-236ENST00000556220 COL16A1Q07092 1604 aaPredicted RBP10.89□□□□□ -0.67
ATXN3-236ENST00000556220 ATF3P18847 181 aa10.89□□□□□ -0.67
ATXN3-236ENST00000556220 HDGFP51858 240 aaKnown RBP10.89□□□□□ -0.67
ATXN3-236ENST00000556220 C14orf37Q86TY3 774 aa10.89□□□□□ -0.67
ATXN3-236ENST00000556220 RABGEF1Q9UJ41 708 aa10.89□□□□□ -0.67
ATXN3-236ENST00000556220 TBX22Q9Y458 520 aa10.89□□□□□ -0.67
ATXN3-236ENST00000556220 EIF2AK4Q9P2K8 1649 aaKnown RBP10.88□□□□□ -0.67
ATXN3-236ENST00000556220 SPDYE16A6NNV3 312 aaPredicted RBP10.88□□□□□ -0.67
ATXN3-236ENST00000556220 COL9A1P20849 921 aa10.88□□□□□ -0.67
ATXN3-236ENST00000556220 E2F4Q16254 413 aa10.88□□□□□ -0.67
ATXN3-236ENST00000556220 RRP7BPQ9NSQ0 103 aa10.88□□□□□ -0.67
ATXN3-236ENST00000556220 WDR70Q9NW82 654 aa10.88□□□□□ -0.67
ATXN3-236ENST00000556220 MAST1Q9Y2H9 1570 aa10.88□□□□□ -0.67
ATXN3-236ENST00000556220 NWD1Q149M9 1564 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 PDIA6Q15084 440 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 C6orf132Q5T0Z8 1188 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 NUTM2DQ5VT03 806 aaPredicted RBP10.87□□□□□ -0.67
ATXN3-236ENST00000556220 BRINP3Q76B58 766 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 DUOX2Q9NRD8 1548 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 KANK1Q14678 1352 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 KIF15Q9NS87 1388 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 PIK3C2BO00750 1634 aa10.87□□□□□ -0.67
ATXN3-236ENST00000556220 ONECUT3O60422 494 aaPredicted RBP10.86□□□□□ -0.67
ATXN3-236ENST00000556220 WNT2BQ93097 391 aa10.86□□□□□ -0.67
ATXN3-236ENST00000556220 ARIH1Q9Y4X5 557 aaPredicted RBP10.86□□□□□ -0.67
ATXN3-236ENST00000556220 PLEKHG1Q9ULL1 1385 aa10.86□□□□□ -0.67
ATXN3-236ENST00000556220 CEP152O94986 1710 aa10.85□□□□□ -0.67
ATXN3-236ENST00000556220 PPP1R15AO75807 674 aaPredicted RBP10.85□□□□□ -0.67
ATXN3-236ENST00000556220 PTPN5P54829 565 aa10.85□□□□□ -0.67
ATXN3-236ENST00000556220 THSD4Q6ZMP0 1018 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms