RNA–Protein interactions for RNA: ENST00000555854.1

VIPAS39-207, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 444 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-207ENST00000555854 PSME1Q06323 249 aa13.5□□□□□ -0.25
VIPAS39-207ENST00000555854 POLR3AO14802 1390 aaPredicted RBP13.49□□□□□ -0.25
VIPAS39-207ENST00000555854 NUDT16Q96DE0 195 aaKnown RBP13.49□□□□□ -0.25
VIPAS39-207ENST00000555854 GPRASP1Q5JY77 1395 aa13.48□□□□□ -0.25
VIPAS39-207ENST00000555854 PLEKHG5O94827 1062 aa13.48□□□□□ -0.25
VIPAS39-207ENST00000555854 CDK19Q9BWU1 502 aa13.48□□□□□ -0.25
VIPAS39-207ENST00000555854 RNF39Q9H2S5 420 aa13.48□□□□□ -0.25
VIPAS39-207ENST00000555854 SRCAPQ6ZRS2 3230 aa13.48□□□□□ -0.25
VIPAS39-207ENST00000555854 CENPJQ9HC77 1338 aaPredicted RBP13.47□□□□□ -0.25
VIPAS39-207ENST00000555854 NRKQ7Z2Y5 1582 aa13.47□□□□□ -0.25
VIPAS39-207ENST00000555854 UNC5CLQ8IV45 518 aa13.47□□□□□ -0.25
VIPAS39-207ENST00000555854 GJD4Q96KN9 370 aaPredicted RBP13.47□□□□□ -0.25
VIPAS39-207ENST00000555854 COL14A1Q05707 1796 aaKnown RBP13.46□□□□□ -0.25
VIPAS39-207ENST00000555854 LMOD2Q6P5Q4 547 aa13.46□□□□□ -0.25
VIPAS39-207ENST00000555854 RNF216Q9NWF9 866 aaPredicted RBP13.46□□□□□ -0.25
VIPAS39-207ENST00000555854 BRWD3Q6RI45 1802 aa13.46□□□□□ -0.26
VIPAS39-207ENST00000555854 FAM83GA6ND36 823 aa13.45□□□□□ -0.26
VIPAS39-207ENST00000555854 NBPF8Q3BBV2 869 aa13.45□□□□□ -0.26
VIPAS39-207ENST00000555854 ACEP12821 1306 aa13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 PLEKHG3A1L390 1219 aa13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 NEUROD1Q13562 356 aa13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 NGDNQ8NEJ9 315 aaKnown RBP13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 PPIP5K1Q6PFW1 1433 aa13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 ATAD2Q6PL18 1390 aa13.44□□□□□ -0.26
VIPAS39-207ENST00000555854 VPS72Q15906 364 aa13.43□□□□□ -0.26
VIPAS39-207ENST00000555854 ROCK2O75116 1388 aaKnown RBP13.43□□□□□ -0.26
VIPAS39-207ENST00000555854 HAP1P54257 671 aaPredicted RBP13.42□□□□□ -0.26
VIPAS39-207ENST00000555854 CABP2Q9NPB3 220 aa13.42□□□□□ -0.26
VIPAS39-207ENST00000555854 CCDC61Q9Y6R9 512 aa13.42□□□□□ -0.26
VIPAS39-207ENST00000555854 LMO7Q8WWI1 1683 aa13.41□□□□□ -0.26
VIPAS39-207ENST00000555854 THSD7AQ9UPZ6 1657 aa13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 USP19O94966 1318 aa13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 SSH2Q76I76 1423 aa13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 PAK3O75914 559 aaPredicted RBP13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 KIAA0232Q92628 1395 aa13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 PIK3C2AO00443 1686 aa13.4□□□□□ -0.26
VIPAS39-207ENST00000555854 USP6P35125 1406 aa13.39□□□□□ -0.27
VIPAS39-207ENST00000555854 SRPK2P78362 688 aaKnown RBP13.39□□□□□ -0.27
VIPAS39-207ENST00000555854 NUTM2GQ5VZR2 741 aa13.39□□□□□ -0.27
VIPAS39-207ENST00000555854 BTG4Q9NY30 223 aa13.39□□□□□ -0.27
VIPAS39-207ENST00000555854 SLIT3O75094 1523 aa13.38□□□□□ -0.27
VIPAS39-207ENST00000555854 AKAP12Q02952 1782 aa13.37□□□□□ -0.27
VIPAS39-207ENST00000555854 SBNO2Q9Y2G9 1366 aa13.37□□□□□ -0.27
VIPAS39-207ENST00000555854 ONECUT3O60422 494 aaPredicted RBP13.37□□□□□ -0.27
VIPAS39-207ENST00000555854 SEPT12Q8IYM1 358 aa13.37□□□□□ -0.27
VIPAS39-207ENST00000555854 CHRNA2Q15822 529 aa13.36□□□□□ -0.27
VIPAS39-207ENST00000555854 PRDM11Q9NQV5 511 aa13.36□□□□□ -0.27
VIPAS39-207ENST00000555854 CAMTA1Q9Y6Y1 1673 aa13.36□□□□□ -0.27
VIPAS39-207ENST00000555854 SPATA31A5Q5VU36 1347 aa13.36□□□□□ -0.27
VIPAS39-207ENST00000555854 SPATA31A7Q8IWB4 1347 aa13.36□□□□□ -0.27
VIPAS39-207ENST00000555854 CPDO75976 1380 aa13.35□□□□□ -0.27
VIPAS39-207ENST00000555854 CABP1Q9NZU7 370 aa13.35□□□□□ -0.27
VIPAS39-207ENST00000555854 CD163L1Q9NR16 1453 aa13.35□□□□□ -0.27
VIPAS39-207ENST00000555854 TONSLQ96HA7 1378 aa13.34□□□□□ -0.27
VIPAS39-207ENST00000555854 MON2Q7Z3U7 1717 aa13.34□□□□□ -0.27
VIPAS39-207ENST00000555854 TRIM26Q12899 539 aaPredicted RBP13.34□□□□□ -0.27
VIPAS39-207ENST00000555854 EVC2Q86UK5 1308 aa13.34□□□□□ -0.27
VIPAS39-207ENST00000555854 BRD4O60885 1362 aaPredicted RBP13.33□□□□□ -0.27
VIPAS39-207ENST00000555854 BLMP54132 1417 aaPredicted RBP13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 CPSF1Q10570 1443 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 ZC3H6P61129 1189 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 FAM98CQ17RN3 349 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 ABTB2Q8N961 1025 aa13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 CCDC9Q9Y3X0 531 aaKnown RBP13.33□□□□□ -0.28
VIPAS39-207ENST00000555854 COL18A1P39060 1754 aa13.32□□□□□ -0.28
VIPAS39-207ENST00000555854 SPATA31A1Q5TZJ5 1347 aa13.32□□□□□ -0.28
VIPAS39-207ENST00000555854 COL5A2P05997 1499 aaPredicted RBP13.31□□□□□ -0.28
VIPAS39-207ENST00000555854 NFAT5O94916 1531 aa13.31□□□□□ -0.28
VIPAS39-207ENST00000555854 USP54Q70EL1 1684 aa13.31□□□□□ -0.28
VIPAS39-207ENST00000555854 TNS1Q9HBL0 1735 aaKnown RBP13.3□□□□□ -0.28
VIPAS39-207ENST00000555854 KRT27Q7Z3Y8 459 aa13.3□□□□□ -0.28
VIPAS39-207ENST00000555854 CARD11Q9BXL7 1154 aa13.3□□□□□ -0.28
VIPAS39-207ENST00000555854 GCP02774 474 aa13.29□□□□□ -0.28
VIPAS39-207ENST00000555854 STRN4Q9NRL3 753 aa13.29□□□□□ -0.28
VIPAS39-207ENST00000555854 TTC21BQ7Z4L5 1316 aa13.29□□□□□ -0.28
VIPAS39-207ENST00000555854 FAM182BQ5T319 152 aa13.28□□□□□ -0.28
VIPAS39-207ENST00000555854 DEFB132Q7Z7B7 95 aa13.28□□□□□ -0.28
VIPAS39-207ENST00000555854 NLRP13Q86W25 1043 aa13.28□□□□□ -0.28
VIPAS39-207ENST00000555854 LARP1Q6PKG0 1096 aaKnown RBP13.27□□□□□ -0.29
VIPAS39-207ENST00000555854 TESK2Q96S53 571 aa13.27□□□□□ -0.29
VIPAS39-207ENST00000555854 RGPD1P0DJD0 1748 aa13.27□□□□□ -0.29
VIPAS39-207ENST00000555854 WNK3Q9BYP7 1800 aa13.27□□□□□ -0.29
VIPAS39-207ENST00000555854 A0A0G2JS52 829 aa13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 NLRP6P59044 892 aa13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 MYT1Q01538 1121 aa13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 AATKQ6ZMQ8 1374 aa13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 CCDC125Q86Z20 511 aa13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 PARP4Q9UKK3 1724 aaKnown RBP13.26□□□□□ -0.29
VIPAS39-207ENST00000555854 LRRC37A3O60309 1634 aa13.25□□□□□ -0.29
VIPAS39-207ENST00000555854 KTN1Q86UP2 1357 aaKnown RBP13.25□□□□□ -0.29
VIPAS39-207ENST00000555854 A0A1W2PP64 1363 aa13.24□□□□□ -0.29
VIPAS39-207ENST00000555854 TTC21AQ8NDW8 1320 aa13.24□□□□□ -0.29
VIPAS39-207ENST00000555854 ZRANB1Q9UGI0 708 aa13.24□□□□□ -0.29
VIPAS39-207ENST00000555854 RGPD5Q99666 1765 aa13.24□□□□□ -0.29
VIPAS39-207ENST00000555854 DISP2A7MBM2 1401 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 CRB1P82279 1406 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 USP31Q70CQ4 1352 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 PEAK1Q9H792 1746 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 BARGINQ6ZT62 677 aa13.23□□□□□ -0.29
VIPAS39-207ENST00000555854 USP35Q9P2H5 1018 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms