RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 RLBP1P12271 317 aa17.27■□□□□ 0.35
SHMT2-222ENST00000555774 MVPQ14764 893 aaKnown RBP17.27■□□□□ 0.35
SHMT2-222ENST00000555774 TMPOP42166 694 aaKnown RBP17.26■□□□□ 0.35
SHMT2-222ENST00000555774 GGNBP2Q9H3C7 697 aa17.26■□□□□ 0.35
SHMT2-222ENST00000555774 PCDHB15Q9Y5E8 787 aa17.25■□□□□ 0.35
SHMT2-222ENST00000555774 MINK1Q8N4C8 1332 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-222ENST00000555774 ATP7BP35670 1465 aa17.25■□□□□ 0.35
SHMT2-222ENST00000555774 USP19O94966 1318 aa17.25■□□□□ 0.35
SHMT2-222ENST00000555774 KIF20BQ96Q89 1820 aa17.24■□□□□ 0.35
SHMT2-222ENST00000555774 U2SURPO15042 1029 aaKnown RBP17.24■□□□□ 0.35
SHMT2-222ENST00000555774 NFKBIBQ15653 356 aa17.24■□□□□ 0.35
SHMT2-222ENST00000555774 DZIP1LQ8IYY4 767 aaKnown RBP17.24■□□□□ 0.35
SHMT2-222ENST00000555774 TRIM35Q9UPQ4 493 aa17.23■□□□□ 0.35
SHMT2-222ENST00000555774 DIAPH1O60610 1272 aaKnown RBP17.22■□□□□ 0.35
SHMT2-222ENST00000555774 FTSJ3Q8IY81 847 aaKnown RBP17.22■□□□□ 0.35
SHMT2-222ENST00000555774 BCL2L13Q9BXK5 485 aa17.22■□□□□ 0.35
SHMT2-222ENST00000555774 SPATA31D1Q6ZQQ2 1576 aa17.22■□□□□ 0.35
SHMT2-222ENST00000555774 CDK19Q9BWU1 502 aa17.22■□□□□ 0.35
SHMT2-222ENST00000555774 SLC4A3P48751 1232 aa17.21■□□□□ 0.35
SHMT2-222ENST00000555774 PDZRN3Q9UPQ7 1066 aa17.21■□□□□ 0.35
SHMT2-222ENST00000555774 TNNQ9UQP3 1299 aa17.21■□□□□ 0.35
SHMT2-222ENST00000555774 EXOSC9Q06265 439 aaKnown RBP17.2■□□□□ 0.34
SHMT2-222ENST00000555774 BECN1Q14457 450 aa17.2■□□□□ 0.34
SHMT2-222ENST00000555774 SMC4Q9NTJ3 1288 aa17.2■□□□□ 0.34
SHMT2-222ENST00000555774 A2ML1A8K2U0 1454 aa17.2■□□□□ 0.34
SHMT2-222ENST00000555774 DDX19BQ9UMR2 479 aa17.2■□□□□ 0.34
SHMT2-222ENST00000555774 FCHSD2O94868 740 aa17.19■□□□□ 0.34
SHMT2-222ENST00000555774 FBXO31Q5XUX0 539 aaPredicted RBP17.19■□□□□ 0.34
SHMT2-222ENST00000555774 TSR2Q969E8 191 aaKnown RBP17.19■□□□□ 0.34
SHMT2-222ENST00000555774 UPF2Q9HAU5 1272 aaKnown RBP17.19■□□□□ 0.34
SHMT2-222ENST00000555774 STAG3Q9UJ98 1225 aa17.19■□□□□ 0.34
SHMT2-222ENST00000555774 KIF16BQ96L93 1317 aa17.18■□□□□ 0.34
SHMT2-222ENST00000555774 HDAC1Q13547 482 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-222ENST00000555774 DIP2BQ9P265 1576 aa17.18■□□□□ 0.34
SHMT2-222ENST00000555774 SETD1AO15047 1707 aaKnown RBP17.18■□□□□ 0.34
SHMT2-222ENST00000555774 RIPK4P57078 832 aa17.18■□□□□ 0.34
SHMT2-222ENST00000555774 ATF7IPQ6VMQ6 1270 aa17.18■□□□□ 0.34
SHMT2-222ENST00000555774 ZNF428Q96B54 188 aa17.18■□□□□ 0.34
SHMT2-222ENST00000555774 ALDH1L2Q3SY69 923 aa17.17■□□□□ 0.34
SHMT2-222ENST00000555774 CABP1Q9NZU7 370 aa17.17■□□□□ 0.34
SHMT2-222ENST00000555774 FAM135BQ49AJ0 1406 aa17.17■□□□□ 0.34
SHMT2-222ENST00000555774 RIMS2Q9UQ26 1411 aa17.17■□□□□ 0.34
SHMT2-222ENST00000555774 TRIM27P14373 513 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 SSH1Q8WYL5 1049 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 PPIP5K1Q6PFW1 1433 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 LRRC7Q96NW7 1537 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 RIMBP3CA6NJZ7 1639 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 RIMBP3BA6NNM3 1639 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 RIMBP3Q9UFD9 1639 aa17.16■□□□□ 0.34
SHMT2-222ENST00000555774 IPO8O15397 1037 aaKnown RBP17.16■□□□□ 0.34
SHMT2-222ENST00000555774 SEC24BO95487 1268 aa17.15■□□□□ 0.34
SHMT2-222ENST00000555774 GSE1Q14687 1217 aa17.15■□□□□ 0.34
SHMT2-222ENST00000555774 BRPF1P55201 1214 aaPredicted RBP17.14■□□□□ 0.33
SHMT2-222ENST00000555774 TBC1D32Q96NH3 1257 aa17.14■□□□□ 0.33
SHMT2-222ENST00000555774 EDC4Q6P2E9 1401 aaKnown RBP17.13■□□□□ 0.33
SHMT2-222ENST00000555774 CALD1Q05682 793 aaKnown RBP17.13■□□□□ 0.33
SHMT2-222ENST00000555774 RSPH6AQ9H0K4 717 aa17.13■□□□□ 0.33
SHMT2-222ENST00000555774 CPSF1Q10570 1443 aaKnown RBP17.13■□□□□ 0.33
SHMT2-222ENST00000555774 NOB1Q9ULX3 412 aaKnown RBP17.12■□□□□ 0.33
SHMT2-222ENST00000555774 FAM69CQ0P6D2 419 aa17.12■□□□□ 0.33
SHMT2-222ENST00000555774 ITPRIPQ8IWB1 547 aa17.12■□□□□ 0.33
SHMT2-222ENST00000555774 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.12■□□□□ 0.33
SHMT2-222ENST00000555774 POLKQ9UBT6 870 aa17.12■□□□□ 0.33
SHMT2-222ENST00000555774 CDK12Q9NYV4 1490 aaPredicted RBP17.11■□□□□ 0.33
SHMT2-222ENST00000555774 AATKQ6ZMQ8 1374 aa17.11■□□□□ 0.33
SHMT2-222ENST00000555774 SMC5Q8IY18 1101 aa17.11■□□□□ 0.33
SHMT2-222ENST00000555774 SIRT1Q96EB6 747 aa17.1■□□□□ 0.33
SHMT2-222ENST00000555774 CHMP4BQ9H444 224 aaKnown RBP17.1■□□□□ 0.33
SHMT2-222ENST00000555774 KNDC1Q76NI1 1749 aa17.1■□□□□ 0.33
SHMT2-222ENST00000555774 PRKAR2BP31323 418 aa17.09■□□□□ 0.33
SHMT2-222ENST00000555774 NFE2L2Q16236 605 aa17.09■□□□□ 0.33
SHMT2-222ENST00000555774 ZBTB40Q9NUA8 1239 aa17.09■□□□□ 0.33
SHMT2-222ENST00000555774 NRXN3Q9Y4C0 1643 aa17.09■□□□□ 0.33
SHMT2-222ENST00000555774 SENP3Q9H4L4 574 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-222ENST00000555774 TMEM57Q8N5G2 664 aa17.08■□□□□ 0.33
SHMT2-222ENST00000555774 TECPR2O15040 1411 aa17.08■□□□□ 0.32
SHMT2-222ENST00000555774 WASLO00401 505 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-222ENST00000555774 CYB5RLQ6IPT4 315 aa17.08■□□□□ 0.32
SHMT2-222ENST00000555774 WAPLQ7Z5K2 1190 aa17.07■□□□□ 0.32
SHMT2-222ENST00000555774 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.07■□□□□ 0.32
SHMT2-222ENST00000555774 ARHGAP45Q92619 1136 aa17.07■□□□□ 0.32
SHMT2-222ENST00000555774 FRAT2O75474 233 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-222ENST00000555774 PIK3R4Q99570 1358 aa17.06■□□□□ 0.32
SHMT2-222ENST00000555774 IFT57Q9NWB7 429 aa17.06■□□□□ 0.32
SHMT2-222ENST00000555774 PTCH1Q13635 1447 aa17.06■□□□□ 0.32
SHMT2-222ENST00000555774 LMOD3Q0VAK6 560 aa17.05■□□□□ 0.32
SHMT2-222ENST00000555774 CPS1P31327 1500 aa17.05■□□□□ 0.32
SHMT2-222ENST00000555774 IL13P35225 146 aa17.05■□□□□ 0.32
SHMT2-222ENST00000555774 GNAI1P63096 354 aa17.05■□□□□ 0.32
SHMT2-222ENST00000555774 MON2Q7Z3U7 1717 aa17.05■□□□□ 0.32
SHMT2-222ENST00000555774 HDGFP51858 240 aaKnown RBP17.04■□□□□ 0.32
SHMT2-222ENST00000555774 NUCB1Q02818 461 aa17.03■□□□□ 0.32
SHMT2-222ENST00000555774 ANTXR1Q9H6X2 564 aa17.03■□□□□ 0.32
SHMT2-222ENST00000555774 MAP2P11137 1827 aaKnown RBP17.03■□□□□ 0.32
SHMT2-222ENST00000555774 ZNF853P0CG23 659 aa17.02■□□□□ 0.32
SHMT2-222ENST00000555774 TBC1D2Q9BYX2 928 aa17.02■□□□□ 0.32
SHMT2-222ENST00000555774 METP08581 1390 aa17.02■□□□□ 0.32
SHMT2-222ENST00000555774 MRPL50Q8N5N7 158 aaKnown RBP17.02■□□□□ 0.31
SHMT2-222ENST00000555774 VAMP4O75379 141 aa17.01■□□□□ 0.31
SHMT2-222ENST00000555774 COG3Q96JB2 828 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms