RNA–Protein interactions for RNA: ENST00000555386.5

PSEN1-213, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,484 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-213ENST00000555386 CDCA8Q53HL2 280 aa13.65□□□□□ -0.22
PSEN1-213ENST00000555386 JCADQ9P266 1359 aa13.64□□□□□ -0.23
PSEN1-213ENST00000555386 C11orf95C9JLR9 678 aaPredicted RBP13.64□□□□□ -0.23
PSEN1-213ENST00000555386 AKAP12Q02952 1782 aa13.63□□□□□ -0.23
PSEN1-213ENST00000555386 POLR3AO14802 1390 aaPredicted RBP13.63□□□□□ -0.23
PSEN1-213ENST00000555386 KTN1Q86UP2 1357 aaKnown RBP13.63□□□□□ -0.23
PSEN1-213ENST00000555386 SPATA31A3Q5VYP0 1347 aa13.62□□□□□ -0.23
PSEN1-213ENST00000555386 HDGFL2Q7Z4V5 671 aaPredicted RBP13.62□□□□□ -0.23
PSEN1-213ENST00000555386 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.62□□□□□ -0.23
PSEN1-213ENST00000555386 CABLES1Q8TDN4 633 aa13.62□□□□□ -0.23
PSEN1-213ENST00000555386 TRPM3Q9HCF6 1732 aaPredicted RBP13.62□□□□□ -0.23
PSEN1-213ENST00000555386 PNPLA6Q8IY17 1366 aa13.62□□□□□ -0.23
PSEN1-213ENST00000555386 HAP1P54257 671 aaPredicted RBP13.61□□□□□ -0.23
PSEN1-213ENST00000555386 MAPK8IP2Q13387 824 aaPredicted RBP13.61□□□□□ -0.23
PSEN1-213ENST00000555386 MEX3CQ5U5Q3 659 aaKnown RBP13.61□□□□□ -0.23
PSEN1-213ENST00000555386 SHPRHQ149N8 1683 aa13.61□□□□□ -0.23
PSEN1-213ENST00000555386 TNS3Q68CZ2 1445 aa13.61□□□□□ -0.23
PSEN1-213ENST00000555386 ADAMTS2O95450 1211 aa13.61□□□□□ -0.23
PSEN1-213ENST00000555386 ABTB2Q8N961 1025 aa13.61□□□□□ -0.23
PSEN1-213ENST00000555386 TERF2IPQ9NYB0 399 aa13.61□□□□□ -0.23
PSEN1-213ENST00000555386 PUS7Q96PZ0 661 aaKnown RBP13.6□□□□□ -0.23
PSEN1-213ENST00000555386 ZNF692Q9BU19 519 aaPredicted RBP13.6□□□□□ -0.23
PSEN1-213ENST00000555386 USP6P35125 1406 aa13.6□□□□□ -0.23
PSEN1-213ENST00000555386 A0A1W2PP64 1363 aa13.59□□□□□ -0.23
PSEN1-213ENST00000555386 SBNO1A3KN83 1393 aa13.59□□□□□ -0.23
PSEN1-213ENST00000555386 MYOM1P52179 1685 aa13.59□□□□□ -0.23
PSEN1-213ENST00000555386 CD163L1Q9NR16 1453 aa13.58□□□□□ -0.23
PSEN1-213ENST00000555386 MON2Q7Z3U7 1717 aa13.58□□□□□ -0.23
PSEN1-213ENST00000555386 KIF7Q2M1P5 1343 aa13.58□□□□□ -0.24
PSEN1-213ENST00000555386 ALS2Q96Q42 1657 aa13.58□□□□□ -0.24
PSEN1-213ENST00000555386 SOX12O15370 315 aa13.58□□□□□ -0.24
PSEN1-213ENST00000555386 TTC21BQ7Z4L5 1316 aa13.57□□□□□ -0.24
PSEN1-213ENST00000555386 CPSF1Q10570 1443 aaKnown RBP13.57□□□□□ -0.24
PSEN1-213ENST00000555386 NLRP6P59044 892 aa13.57□□□□□ -0.24
PSEN1-213ENST00000555386 ZRANB1Q9UGI0 708 aa13.57□□□□□ -0.24
PSEN1-213ENST00000555386 ARHGEF10O15013 1369 aa13.57□□□□□ -0.24
PSEN1-213ENST00000555386 ZBTB7CA1YPR0 619 aa13.56□□□□□ -0.24
PSEN1-213ENST00000555386 NME9Q86XW9 330 aa13.56□□□□□ -0.24
PSEN1-213ENST00000555386 NINLQ9Y2I6 1382 aa13.56□□□□□ -0.24
PSEN1-213ENST00000555386 SPATA31A6Q5VVP1 1343 aa13.56□□□□□ -0.24
PSEN1-213ENST00000555386 LRP6O75581 1613 aa13.56□□□□□ -0.24
PSEN1-213ENST00000555386 MED1Q15648 1581 aaPredicted RBP13.55□□□□□ -0.24
PSEN1-213ENST00000555386 ANKRD36BQ8N2N9 1353 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 CNGB1Q14028 1251 aaPredicted RBP13.55□□□□□ -0.24
PSEN1-213ENST00000555386 C8orf37Q96NL8 207 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 WASHC2AQ641Q2 1341 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 PIK3C2AO00443 1686 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 CCDC7Q96M83 1385 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 PANK3Q9H999 370 aa13.55□□□□□ -0.24
PSEN1-213ENST00000555386 COL22A1Q8NFW1 1626 aaPredicted RBP13.54□□□□□ -0.24
PSEN1-213ENST00000555386 NRKQ7Z2Y5 1582 aa13.54□□□□□ -0.24
PSEN1-213ENST00000555386 CARD14Q9BXL6 1004 aa13.54□□□□□ -0.24
PSEN1-213ENST00000555386 ABCA3Q99758 1704 aa13.53□□□□□ -0.24
PSEN1-213ENST00000555386 ZC3H6P61129 1189 aaKnown RBP13.53□□□□□ -0.24
PSEN1-213ENST00000555386 NLRP13Q86W25 1043 aa13.53□□□□□ -0.24
PSEN1-213ENST00000555386 EDC4Q6P2E9 1401 aaKnown RBP13.53□□□□□ -0.24
PSEN1-213ENST00000555386 NSD3Q9BZ95 1437 aa13.53□□□□□ -0.24
PSEN1-213ENST00000555386 TTC21AQ8NDW8 1320 aa13.52□□□□□ -0.24
PSEN1-213ENST00000555386 SSH2Q76I76 1423 aa13.52□□□□□ -0.25
PSEN1-213ENST00000555386 NGLY1Q96IV0 654 aa13.52□□□□□ -0.25
PSEN1-213ENST00000555386 GGNBP2Q9H3C7 697 aa13.51□□□□□ -0.25
PSEN1-213ENST00000555386 MARF1Q9Y4F3 1742 aaKnown RBP13.51□□□□□ -0.25
PSEN1-213ENST00000555386 BRD4O60885 1362 aaPredicted RBP13.51□□□□□ -0.25
PSEN1-213ENST00000555386 PHRF1Q9P1Y6 1649 aaKnown RBP13.5□□□□□ -0.25
PSEN1-213ENST00000555386 KIF20BQ96Q89 1820 aa13.5□□□□□ -0.25
PSEN1-213ENST00000555386 CHRNA2Q15822 529 aa13.5□□□□□ -0.25
PSEN1-213ENST00000555386 CRYBG1Q9Y4K1 1723 aa13.49□□□□□ -0.25
PSEN1-213ENST00000555386 GCP02774 474 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 COG3Q96JB2 828 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 PRDM11Q9NQV5 511 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 GTF3C3Q9Y5Q9 886 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 AFF2P51816 1311 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 FYB1O15117 783 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 FBLN1P23142 703 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 YTHDC1Q96MU7 727 aaKnown RBP13.48□□□□□ -0.25
PSEN1-213ENST00000555386 KNSTRNQ9Y448 316 aa13.48□□□□□ -0.25
PSEN1-213ENST00000555386 KIAA0232Q92628 1395 aa13.47□□□□□ -0.25
PSEN1-213ENST00000555386 FAM83GA6ND36 823 aa13.47□□□□□ -0.25
PSEN1-213ENST00000555386 TNNT2P45379 298 aaPredicted RBP13.47□□□□□ -0.25
PSEN1-213ENST00000555386 USP19O94966 1318 aa13.47□□□□□ -0.25
PSEN1-213ENST00000555386 CGNL1Q0VF96 1302 aa13.47□□□□□ -0.25
PSEN1-213ENST00000555386 USP21Q9UK80 565 aa13.45□□□□□ -0.26
PSEN1-213ENST00000555386 PLCH1Q4KWH8 1693 aa13.44□□□□□ -0.26
PSEN1-213ENST00000555386 DDX10Q13206 875 aaKnown RBP13.44□□□□□ -0.26
PSEN1-213ENST00000555386 STRN4Q9NRL3 753 aa13.44□□□□□ -0.26
PSEN1-213ENST00000555386 BTG4Q9NY30 223 aa13.44□□□□□ -0.26
PSEN1-213ENST00000555386 LTN1O94822 1766 aa13.44□□□□□ -0.26
PSEN1-213ENST00000555386 SLIT3O75094 1523 aa13.44□□□□□ -0.26
PSEN1-213ENST00000555386 USP31Q70CQ4 1352 aa13.43□□□□□ -0.26
PSEN1-213ENST00000555386 CC2D1BQ5T0F9 858 aaKnown RBP13.43□□□□□ -0.26
PSEN1-213ENST00000555386 KCNH5Q8NCM2 988 aa13.43□□□□□ -0.26
PSEN1-213ENST00000555386 RGS17Q9UGC6 210 aaPredicted RBP13.43□□□□□ -0.26
PSEN1-213ENST00000555386 CCDC9Q9Y3X0 531 aaKnown RBP13.43□□□□□ -0.26
PSEN1-213ENST00000555386 RGPD5Q99666 1765 aa13.43□□□□□ -0.26
PSEN1-213ENST00000555386 OVOS2A0A0J9YW53 1432 aa13.43□□□□□ -0.26
PSEN1-213ENST00000555386 OVOS2Q6IE36 1432 aa13.43□□□□□ -0.26
PSEN1-213ENST00000555386 COL14A1Q05707 1796 aaKnown RBP13.42□□□□□ -0.26
PSEN1-213ENST00000555386 PPM1GO15355 546 aaPredicted RBP13.42□□□□□ -0.26
PSEN1-213ENST00000555386 HOXD11P31277 338 aaPredicted RBP13.42□□□□□ -0.26
PSEN1-213ENST00000555386 RRS1Q15050 365 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms