RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 BLMP54132 1417 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-215ENST00000554656 SEPT12Q8IYM1 358 aa15.43■□□□□ 0.06
SHMT2-215ENST00000554656 THSD7AQ9UPZ6 1657 aa15.42■□□□□ 0.06
SHMT2-215ENST00000554656 ONECUT3O60422 494 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-215ENST00000554656 CCDC125Q86Z20 511 aa15.41■□□□□ 0.06
SHMT2-215ENST00000554656 NGDNQ8NEJ9 315 aaKnown RBP15.41■□□□□ 0.06
SHMT2-215ENST00000554656 NUDT16Q96DE0 195 aaKnown RBP15.41■□□□□ 0.06
SHMT2-215ENST00000554656 NBPF1Q3BBV0 1214 aa15.4■□□□□ 0.06
SHMT2-215ENST00000554656 BTG4Q9NY30 223 aa15.4■□□□□ 0.06
SHMT2-215ENST00000554656 CCDC9Q9Y3X0 531 aaKnown RBP15.4■□□□□ 0.06
SHMT2-215ENST00000554656 QRICH2Q9H0J4 1663 aa15.4■□□□□ 0.06
SHMT2-215ENST00000554656 POLR3AO14802 1390 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-215ENST00000554656 NRKQ7Z2Y5 1582 aa15.39■□□□□ 0.05
SHMT2-215ENST00000554656 DEFB132Q7Z7B7 95 aa15.38■□□□□ 0.05
SHMT2-215ENST00000554656 CDK19Q9BWU1 502 aa15.38■□□□□ 0.05
SHMT2-215ENST00000554656 PAK3O75914 559 aaPredicted RBP15.37■□□□□ 0.05
SHMT2-215ENST00000554656 FAM98CQ17RN3 349 aaKnown RBP15.37■□□□□ 0.05
SHMT2-215ENST00000554656 KRT27Q7Z3Y8 459 aa15.37■□□□□ 0.05
SHMT2-215ENST00000554656 TNS1Q9HBL0 1735 aaKnown RBP15.37■□□□□ 0.05
SHMT2-215ENST00000554656 KIAA0232Q92628 1395 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 LMO7Q8WWI1 1683 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 ZRANB1Q9UGI0 708 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 ACEP12821 1306 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 SPATA31A5Q5VU36 1347 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 SPATA31A7Q8IWB4 1347 aa15.36■□□□□ 0.05
SHMT2-215ENST00000554656 TRPM1Q7Z4N2 1603 aa15.35■□□□□ 0.05
SHMT2-215ENST00000554656 RGPD1P0DJD0 1748 aa15.35■□□□□ 0.05
SHMT2-215ENST00000554656 NUTM2GQ5VZR2 741 aa15.34■□□□□ 0.05
SHMT2-215ENST00000554656 PRDM11Q9NQV5 511 aa15.34■□□□□ 0.05
SHMT2-215ENST00000554656 PLEKHG3A1L390 1219 aa15.33■□□□□ 0.04
SHMT2-215ENST00000554656 CHRNA2Q15822 529 aa15.33■□□□□ 0.04
SHMT2-215ENST00000554656 NBPF8Q3BBV2 869 aa15.33■□□□□ 0.04
SHMT2-215ENST00000554656 A0A0G2JS52 829 aa15.32■□□□□ 0.04
SHMT2-215ENST00000554656 MYT1Q01538 1121 aa15.32■□□□□ 0.04
SHMT2-215ENST00000554656 CCDC61Q9Y6R9 512 aa15.32■□□□□ 0.04
SHMT2-215ENST00000554656 PPIP5K1Q6PFW1 1433 aa15.32■□□□□ 0.04
SHMT2-215ENST00000554656 CAMTA1Q9Y6Y1 1673 aa15.32■□□□□ 0.04
SHMT2-215ENST00000554656 FAM182BQ5T319 152 aa15.31■□□□□ 0.04
SHMT2-215ENST00000554656 USP19O94966 1318 aa15.31■□□□□ 0.04
SHMT2-215ENST00000554656 CENPJQ9HC77 1338 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-215ENST00000554656 ZC3H6P61129 1189 aaKnown RBP15.3■□□□□ 0.04
SHMT2-215ENST00000554656 SPATA31A1Q5TZJ5 1347 aa15.3■□□□□ 0.04
SHMT2-215ENST00000554656 PIK3C2AO00443 1686 aa15.29■□□□□ 0.04
SHMT2-215ENST00000554656 LRP5O75197 1615 aa15.29■□□□□ 0.04
SHMT2-215ENST00000554656 SSH2Q76I76 1423 aa15.29■□□□□ 0.04
SHMT2-215ENST00000554656 L3MBTL2Q969R5 705 aa15.29■□□□□ 0.04
SHMT2-215ENST00000554656 SF3B2Q13435 895 aaKnown RBP15.28■□□□□ 0.04
SHMT2-215ENST00000554656 CABP2Q9NPB3 220 aa15.28■□□□□ 0.04
SHMT2-215ENST00000554656 CPDO75976 1380 aa15.27■□□□□ 0.04
SHMT2-215ENST00000554656 AKAP12Q02952 1782 aa15.27■□□□□ 0.04
SHMT2-215ENST00000554656 SRPK2P78362 688 aaKnown RBP15.27■□□□□ 0.04
SHMT2-215ENST00000554656 SIN3AQ96ST3 1273 aa15.27■□□□□ 0.04
SHMT2-215ENST00000554656 STRN4Q9NRL3 753 aa15.27■□□□□ 0.04
SHMT2-215ENST00000554656 SLIT3O75094 1523 aa15.27■□□□□ 0.03
SHMT2-215ENST00000554656 DISP2A7MBM2 1401 aa15.26■□□□□ 0.03
SHMT2-215ENST00000554656 USP6P35125 1406 aa15.26■□□□□ 0.03
SHMT2-215ENST00000554656 ABTB2Q8N961 1025 aa15.26■□□□□ 0.03
SHMT2-215ENST00000554656 COL18A1P39060 1754 aa15.26■□□□□ 0.03
SHMT2-215ENST00000554656 PARP4Q9UKK3 1724 aaKnown RBP15.25■□□□□ 0.03
SHMT2-215ENST00000554656 COL5A2P05997 1499 aaPredicted RBP15.25■□□□□ 0.03
SHMT2-215ENST00000554656 BAG6P46379 1132 aa15.24■□□□□ 0.03
SHMT2-215ENST00000554656 LARP1Q6PKG0 1096 aaKnown RBP15.24■□□□□ 0.03
SHMT2-215ENST00000554656 WNK3Q9BYP7 1800 aa15.24■□□□□ 0.03
SHMT2-215ENST00000554656 RREB1Q92766 1687 aa15.23■□□□□ 0.03
SHMT2-215ENST00000554656 EN1Q05925 392 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-215ENST00000554656 BRD4O60885 1362 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-215ENST00000554656 RGPD5Q99666 1765 aa15.22■□□□□ 0.03
SHMT2-215ENST00000554656 PSDA5PKW4 1024 aaPredicted RBP15.22■□□□□ 0.03
SHMT2-215ENST00000554656 GCP02774 474 aa15.22■□□□□ 0.03
SHMT2-215ENST00000554656 CABP1Q9NZU7 370 aa15.22■□□□□ 0.03
SHMT2-215ENST00000554656 USP35Q9P2H5 1018 aa15.22■□□□□ 0.03
SHMT2-215ENST00000554656 NUP188Q5SRE5 1749 aa15.21■□□□□ 0.03
SHMT2-215ENST00000554656 PEAK1Q9H792 1746 aa15.21■□□□□ 0.03
SHMT2-215ENST00000554656 BARGINQ6ZT62 677 aa15.21■□□□□ 0.03
SHMT2-215ENST00000554656 LRRC37A3O60309 1634 aa15.21■□□□□ 0.02
SHMT2-215ENST00000554656 MON2Q7Z3U7 1717 aa15.2■□□□□ 0.02
SHMT2-215ENST00000554656 NLRP13Q86W25 1043 aa15.2■□□□□ 0.02
SHMT2-215ENST00000554656 ROCK2O75116 1388 aaKnown RBP15.2■□□□□ 0.02
SHMT2-215ENST00000554656 TRIM37O94972 964 aa15.19■□□□□ 0.02
SHMT2-215ENST00000554656 EVA1CP58658 441 aa15.19■□□□□ 0.02
SHMT2-215ENST00000554656 NEUROD1Q13562 356 aa15.19■□□□□ 0.02
SHMT2-215ENST00000554656 SBF2Q86WG5 1849 aa15.19■□□□□ 0.02
SHMT2-215ENST00000554656 EVC2Q86UK5 1308 aa15.18■□□□□ 0.02
SHMT2-215ENST00000554656 EZH2Q15910 746 aaKnown RBP15.18■□□□□ 0.02
SHMT2-215ENST00000554656 TCP11L2Q8N4U5 519 aa15.18■□□□□ 0.02
SHMT2-215ENST00000554656 NFAT5O94916 1531 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 AATKQ6ZMQ8 1374 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 NLRP6P59044 892 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 FAM196AQ6ZSG2 479 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 CAMKK2Q96RR4 588 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 CRB1P82279 1406 aa15.17■□□□□ 0.02
SHMT2-215ENST00000554656 CPSF1Q10570 1443 aaKnown RBP15.17■□□□□ 0.02
SHMT2-215ENST00000554656 USP54Q70EL1 1684 aa15.16■□□□□ 0.02
SHMT2-215ENST00000554656 TTC21BQ7Z4L5 1316 aa15.15■□□□□ 0.02
SHMT2-215ENST00000554656 ZBTB7CA1YPR0 619 aa15.14■□□□□ 0.01
SHMT2-215ENST00000554656 R3HDM1Q15032 1099 aaKnown RBP15.14■□□□□ 0.01
SHMT2-215ENST00000554656 THRAP3Q9Y2W1 955 aaKnown RBP15.14■□□□□ 0.01
SHMT2-215ENST00000554656 CD163L1Q9NR16 1453 aa15.14■□□□□ 0.01
SHMT2-215ENST00000554656 SBNO2Q9Y2G9 1366 aa15.13■□□□□ 0.01
SHMT2-215ENST00000554656 PDE3BQ13370 1112 aa15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms