RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 SPATA31A5Q5VU36 1347 aa20.64■□□□□ 0.89
SHMT2-208ENST00000553868 SPATA31A7Q8IWB4 1347 aa20.64■□□□□ 0.89
SHMT2-208ENST00000553868 PSME1Q06323 249 aa20.62■□□□□ 0.89
SHMT2-208ENST00000553868 PHF8Q9UPP1 1060 aa20.62■□□□□ 0.89
SHMT2-208ENST00000553868 PARD3Q8TEW0 1356 aa20.61■□□□□ 0.89
SHMT2-208ENST00000553868 NBPF8Q3BBV2 869 aa20.61■□□□□ 0.89
SHMT2-208ENST00000553868 NBPF14Q5TI25 921 aa20.61■□□□□ 0.89
SHMT2-208ENST00000553868 FAM196AQ6ZSG2 479 aa20.6■□□□□ 0.89
SHMT2-208ENST00000553868 SBNO1A3KN83 1393 aa20.59■□□□□ 0.89
SHMT2-208ENST00000553868 COL14A1Q05707 1796 aaKnown RBP20.59■□□□□ 0.89
SHMT2-208ENST00000553868 ARHGEF10O15013 1369 aa20.59■□□□□ 0.89
SHMT2-208ENST00000553868 L3MBTL2Q969R5 705 aa20.58■□□□□ 0.89
SHMT2-208ENST00000553868 PPLO60437 1756 aa20.58■□□□□ 0.89
SHMT2-208ENST00000553868 CEP350Q5VT06 3117 aa20.58■□□□□ 0.88
SHMT2-208ENST00000553868 TMEM132EQ6IEE7 984 aa20.56■□□□□ 0.88
SHMT2-208ENST00000553868 NRKQ7Z2Y5 1582 aa20.55■□□□□ 0.88
SHMT2-208ENST00000553868 TECPR2O15040 1411 aa20.55■□□□□ 0.88
SHMT2-208ENST00000553868 NRXN1Q9ULB1 1477 aa20.55■□□□□ 0.88
SHMT2-208ENST00000553868 IFT172Q9UG01 1749 aa20.54■□□□□ 0.88
SHMT2-208ENST00000553868 PMFBP1Q8TBY8 1022 aa20.53■□□□□ 0.88
SHMT2-208ENST00000553868 PDGFDQ9GZP0 370 aaPredicted RBP20.53■□□□□ 0.88
SHMT2-208ENST00000553868 SPATA31A1Q5TZJ5 1347 aa20.53■□□□□ 0.88
SHMT2-208ENST00000553868 RPGRIP1LQ68CZ1 1315 aa20.53■□□□□ 0.88
SHMT2-208ENST00000553868 ADGRF5Q8IZF2 1346 aa20.53■□□□□ 0.88
SHMT2-208ENST00000553868 MYOM1P52179 1685 aa20.51■□□□□ 0.87
SHMT2-208ENST00000553868 STAC3Q96MF2 364 aa20.5■□□□□ 0.87
SHMT2-208ENST00000553868 ABCC11Q96J66 1382 aa20.49■□□□□ 0.87
SHMT2-208ENST00000553868 USP35Q9P2H5 1018 aa20.49■□□□□ 0.87
SHMT2-208ENST00000553868 SPATA31E1Q6ZUB1 1445 aa20.49■□□□□ 0.87
SHMT2-208ENST00000553868 KNDC1Q76NI1 1749 aa20.49■□□□□ 0.87
SHMT2-208ENST00000553868 CHD4Q14839 1912 aa20.49■□□□□ 0.87
SHMT2-208ENST00000553868 TRPM3Q9HCF6 1732 aaPredicted RBP20.48■□□□□ 0.87
SHMT2-208ENST00000553868 ZBTB7AO95365 584 aa20.48■□□□□ 0.87
SHMT2-208ENST00000553868 ANO8Q9HCE9 1232 aaPredicted RBP20.48■□□□□ 0.87
SHMT2-208ENST00000553868 STRN4Q9NRL3 753 aa20.48■□□□□ 0.87
SHMT2-208ENST00000553868 CASZ1Q86V15 1759 aa20.47■□□□□ 0.87
SHMT2-208ENST00000553868 RGL3Q3MIN7 710 aa20.47■□□□□ 0.87
SHMT2-208ENST00000553868 PRDM11Q9NQV5 511 aa20.47■□□□□ 0.87
SHMT2-208ENST00000553868 ALS2Q96Q42 1657 aa20.46■□□□□ 0.87
SHMT2-208ENST00000553868 PDE3BQ13370 1112 aa20.46■□□□□ 0.87
SHMT2-208ENST00000553868 CHRNA2Q15822 529 aa20.46■□□□□ 0.87
SHMT2-208ENST00000553868 DCAF11Q8TEB1 546 aa20.46■□□□□ 0.87
SHMT2-208ENST00000553868 PTGER2P43116 358 aa20.45■□□□□ 0.86
SHMT2-208ENST00000553868 SAFB2Q14151 953 aaKnown RBP eCLIP20.44■□□□□ 0.86
SHMT2-208ENST00000553868 ATF5Q9Y2D1 282 aaPredicted RBP20.44■□□□□ 0.86
SHMT2-208ENST00000553868 CRYBG1Q9Y4K1 1723 aa20.44■□□□□ 0.86
SHMT2-208ENST00000553868 YTHDC2Q9H6S0 1430 aaKnown RBP20.43■□□□□ 0.86
SHMT2-208ENST00000553868 SYT17Q9BSW7 474 aa20.42■□□□□ 0.86
SHMT2-208ENST00000553868 FHDC1Q9C0D6 1143 aaPredicted RBP20.42■□□□□ 0.86
SHMT2-208ENST00000553868 KDM2AQ9Y2K7 1162 aa20.41■□□□□ 0.86
SHMT2-208ENST00000553868 KIAA0232Q92628 1395 aa20.41■□□□□ 0.86
SHMT2-208ENST00000553868 GIGYF1O75420 1035 aaPredicted RBP20.4■□□□□ 0.86
SHMT2-208ENST00000553868 ZNF316A6NFI3 1004 aaPredicted RBP20.37■□□□□ 0.85
SHMT2-208ENST00000553868 PAK3O75914 559 aaPredicted RBP20.36■□□□□ 0.85
SHMT2-208ENST00000553868 ZC3H6P61129 1189 aaKnown RBP20.36■□□□□ 0.85
SHMT2-208ENST00000553868 BARGINQ6ZT62 677 aa20.36■□□□□ 0.85
SHMT2-208ENST00000553868 PTF1AQ7RTS3 328 aa20.36■□□□□ 0.85
SHMT2-208ENST00000553868 GPRASP1Q5JY77 1395 aa20.35■□□□□ 0.85
SHMT2-208ENST00000553868 LARP1Q6PKG0 1096 aaKnown RBP20.34■□□□□ 0.85
SHMT2-208ENST00000553868 PRAM1Q96QH2 718 aa20.34■□□□□ 0.85
SHMT2-208ENST00000553868 SSH2Q76I76 1423 aa20.34■□□□□ 0.85
SHMT2-208ENST00000553868 GOLGB1Q14789 3259 aaKnown RBP20.33■□□□□ 0.85
SHMT2-208ENST00000553868 EVA1CP58658 441 aa20.33■□□□□ 0.85
SHMT2-208ENST00000553868 SIRT1Q96EB6 747 aa20.33■□□□□ 0.85
SHMT2-208ENST00000553868 BCL11BQ9C0K0 894 aaPredicted RBP20.33■□□□□ 0.85
SHMT2-208ENST00000553868 PIK3C2GO75747 1445 aa20.33■□□□□ 0.84
SHMT2-208ENST00000553868 ANKARQ7Z5J8 1434 aa20.32■□□□□ 0.84
SHMT2-208ENST00000553868 PRR36Q9H6K5 1346 aa20.31■□□□□ 0.84
SHMT2-208ENST00000553868 PROM2Q8N271 834 aa20.31■□□□□ 0.84
SHMT2-208ENST00000553868 PLSCR1O15162 318 aa20.3■□□□□ 0.84
SHMT2-208ENST00000553868 NUTM2GQ5VZR2 741 aa20.3■□□□□ 0.84
SHMT2-208ENST00000553868 TCP11L2Q8N4U5 519 aa20.3■□□□□ 0.84
SHMT2-208ENST00000553868 HIRIP3Q9BW71 556 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-208ENST00000553868 RGPD3A6NKT7 1758 aaPredicted RBP20.3■□□□□ 0.84
SHMT2-208ENST00000553868 RGPD4Q7Z3J3 1758 aa20.3■□□□□ 0.84
SHMT2-208ENST00000553868 PHRF1Q9P1Y6 1649 aaKnown RBP20.3■□□□□ 0.84
SHMT2-208ENST00000553868 DLC1Q96QB1 1528 aa20.29■□□□□ 0.84
SHMT2-208ENST00000553868 EIF4G2P78344 907 aaKnown RBP eCLIP20.29■□□□□ 0.84
SHMT2-208ENST00000553868 SBF2Q86WG5 1849 aa20.29■□□□□ 0.84
SHMT2-208ENST00000553868 PEAK1Q9H792 1746 aa20.28■□□□□ 0.84
SHMT2-208ENST00000553868 SGIP1Q9BQI5 828 aa20.28■□□□□ 0.84
SHMT2-208ENST00000553868 ROCK2O75116 1388 aaKnown RBP20.28■□□□□ 0.84
SHMT2-208ENST00000553868 TRPM1Q7Z4N2 1603 aa20.27■□□□□ 0.83
SHMT2-208ENST00000553868 GPR162Q16538 588 aa20.26■□□□□ 0.83
SHMT2-208ENST00000553868 NGDNQ8NEJ9 315 aaKnown RBP20.26■□□□□ 0.83
SHMT2-208ENST00000553868 SHANK3Q9BYB0 1731 aa20.26■□□□□ 0.83
SHMT2-208ENST00000553868 PARP4Q9UKK3 1724 aaKnown RBP20.25■□□□□ 0.83
SHMT2-208ENST00000553868 CFAP70Q5T0N1 1121 aa20.25■□□□□ 0.83
SHMT2-208ENST00000553868 CARD11Q9BXL7 1154 aa20.25■□□□□ 0.83
SHMT2-208ENST00000553868 POGKQ9P215 609 aa20.25■□□□□ 0.83
SHMT2-208ENST00000553868 MTFR1LQ9H019 292 aa20.24■□□□□ 0.83
SHMT2-208ENST00000553868 OVOS2A0A0G2JMS6 1433 aa20.24■□□□□ 0.83
SHMT2-208ENST00000553868 OVOS2A0A0J9YW53 1432 aa20.24■□□□□ 0.83
SHMT2-208ENST00000553868 OVOS2Q6IE36 1432 aa20.24■□□□□ 0.83
SHMT2-208ENST00000553868 ARXQ96QS3 562 aa20.23■□□□□ 0.83
SHMT2-208ENST00000553868 C14orf93Q9H972 538 aaKnown RBP20.23■□□□□ 0.83
SHMT2-208ENST00000553868 STK32BQ9NY57 414 aa20.23■□□□□ 0.83
SHMT2-208ENST00000553868 KIAA1210Q9ULL0 1709 aa20.23■□□□□ 0.83
SHMT2-208ENST00000553868 MINK1Q8N4C8 1332 aaPredicted RBP20.22■□□□□ 0.83
SHMT2-208ENST00000553868 HSPA5P11021 654 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms