RNA–Protein interactions for RNA: ENST00000553691.5

VIPAS39-205, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 5

Gene VIPAS39, Length 806 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-205ENST00000553691 MLLT3P42568 568 aaPredicted RBP10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 TSR1Q2NL82 804 aaKnown RBP10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 C6orf132Q5T0Z8 1188 aa10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 ZMYM3Q14202 1370 aa10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 RNF17Q9BXT8 1623 aaKnown RBP10.11□□□□□ -0.79
VIPAS39-205ENST00000553691 FGD6Q6ZV73 1430 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 PROX2Q3B8N5 592 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 RSPH4AQ5TD94 716 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 RNF166Q96A37 237 aaPredicted RBP10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 ZBED2Q9BTP6 218 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 VPS9D1Q9Y2B5 631 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 DNMT1P26358 1616 aaKnown RBP10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 SHANK2Q9UPX8 1470 aa10.1□□□□□ -0.79
VIPAS39-205ENST00000553691 ABCC5O15440 1437 aa10.09□□□□□ -0.79
VIPAS39-205ENST00000553691 TK2O00142 265 aa10.09□□□□□ -0.79
VIPAS39-205ENST00000553691 EN1Q05925 392 aaPredicted RBP10.09□□□□□ -0.79
VIPAS39-205ENST00000553691 FAM135AQ9P2D6 1515 aa10.08□□□□□ -0.8
VIPAS39-205ENST00000553691 EIF2AK4Q9P2K8 1649 aaKnown RBP10.08□□□□□ -0.8
VIPAS39-205ENST00000553691 HRO43593 1189 aa10.08□□□□□ -0.8
VIPAS39-205ENST00000553691 POTEAQ6S8J7 498 aa10.08□□□□□ -0.8
VIPAS39-205ENST00000553691 KDM5DQ9BY66 1539 aa10.07□□□□□ -0.8
VIPAS39-205ENST00000553691 CEP170BQ9Y4F5 1589 aaPredicted RBP10.07□□□□□ -0.8
VIPAS39-205ENST00000553691 PPP1R3GB7ZBB8 358 aa10.07□□□□□ -0.8
VIPAS39-205ENST00000553691 OSBPP22059 807 aa10.07□□□□□ -0.8
VIPAS39-205ENST00000553691 DAPK1P53355 1430 aa10.07□□□□□ -0.8
VIPAS39-205ENST00000553691 SEMA3EO15041 775 aa10.06□□□□□ -0.8
VIPAS39-205ENST00000553691 CDHR5Q9HBB8 845 aa10.06□□□□□ -0.8
VIPAS39-205ENST00000553691 GGT6Q6P531 493 aa10.05□□□□□ -0.8
VIPAS39-205ENST00000553691 VSIG10Q8N0Z9 540 aa10.05□□□□□ -0.8
VIPAS39-205ENST00000553691 STAC3Q96MF2 364 aa10.05□□□□□ -0.8
VIPAS39-205ENST00000553691 ABCC3O15438 1527 aa10.05□□□□□ -0.8
VIPAS39-205ENST00000553691 DUOX2Q9NRD8 1548 aa10.05□□□□□ -0.8
VIPAS39-205ENST00000553691 PZPP20742 1482 aa10.04□□□□□ -0.8
VIPAS39-205ENST00000553691 DEPDC5O75140 1603 aa10.04□□□□□ -0.8
VIPAS39-205ENST00000553691 PRDM15P57071 1507 aaPredicted RBP10.04□□□□□ -0.8
VIPAS39-205ENST00000553691 ZC3H13Q5T200 1668 aaKnown RBP10.04□□□□□ -0.8
VIPAS39-205ENST00000553691 ANKLE2Q86XL3 938 aa10.04□□□□□ -0.8
VIPAS39-205ENST00000553691 STRCP1A6NGW2 1772 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 KIF3BO15066 747 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 CEP152O94986 1710 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 TSPY4P0CV99 314 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 TSPY10P0CW01 314 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 ADGRL2O95490 1459 aa10.03□□□□□ -0.8
VIPAS39-205ENST00000553691 NEURL4Q96JN8 1562 aa10.02□□□□□ -0.81
VIPAS39-205ENST00000553691 SLC4A5Q9BY07 1137 aa10.02□□□□□ -0.81
VIPAS39-205ENST00000553691 KIF15Q9NS87 1388 aa10.01□□□□□ -0.81
VIPAS39-205ENST00000553691 VWDEQ8N2E2 1590 aa10.01□□□□□ -0.81
VIPAS39-205ENST00000553691 ERBINQ96RT1 1412 aa10.01□□□□□ -0.81
VIPAS39-205ENST00000553691 KCTD12Q96CX2 325 aaKnown RBP10□□□□□ -0.81
VIPAS39-205ENST00000553691 KIAA1468Q9P260 1216 aa10□□□□□ -0.81
VIPAS39-205ENST00000553691 SYNMO15061 1565 aa10□□□□□ -0.81
VIPAS39-205ENST00000553691 A2ML1A8K2U0 1454 aa9.99□□□□□ -0.81
VIPAS39-205ENST00000553691 BHMG1C9JSJ3 638 aaPredicted RBP9.99□□□□□ -0.81
VIPAS39-205ENST00000553691 FBXO31Q5XUX0 539 aaPredicted RBP9.99□□□□□ -0.81
VIPAS39-205ENST00000553691 THEMISQ8N1K5 641 aaPredicted RBP9.99□□□□□ -0.81
VIPAS39-205ENST00000553691 XIRP1Q702N8 1843 aaKnown RBP9.98□□□□□ -0.81
VIPAS39-205ENST00000553691 MRPL50Q8N5N7 158 aaKnown RBP9.98□□□□□ -0.81
VIPAS39-205ENST00000553691 ERVK-7P63135 1459 aa9.98□□□□□ -0.81
VIPAS39-205ENST00000553691 LMTK2Q8IWU2 1503 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 TRIM6-TRIM34B2RNG4 842 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 RRP7BPQ9NSQ0 103 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 SEPT9Q9UHD8 586 aaPredicted RBP9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 TSKSQ9UJT2 592 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 WASHC2CQ9Y4E1 1318 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 TNRQ92752 1358 aa9.97□□□□□ -0.81
VIPAS39-205ENST00000553691 GOLGA8CPA6NN73 597 aa9.96□□□□□ -0.82
VIPAS39-205ENST00000553691 RABGEF1Q9UJ41 708 aa9.96□□□□□ -0.82
VIPAS39-205ENST00000553691 NPHP4O75161 1426 aaPredicted RBP9.96□□□□□ -0.82
VIPAS39-205ENST00000553691 ARHGAP31Q2M1Z3 1444 aa9.96□□□□□ -0.82
VIPAS39-205ENST00000553691 LRRC7Q96NW7 1537 aa9.96□□□□□ -0.82
VIPAS39-205ENST00000553691 CDCA7LQ96GN5 454 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 NBPF3Q9H094 633 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 FAM198AQ9UFP1 575 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 ANKRD30AQ9BXX3 1397 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 NLRP1Q9C000 1473 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 IQGAP1P46940 1657 aa9.95□□□□□ -0.82
VIPAS39-205ENST00000553691 UBR1Q8IWV7 1749 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 UNC13BO14795 1591 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 NUTM2FA1L443 756 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 SMAPO00193 183 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 PRSS12P56730 875 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 CHIC2Q9UKJ5 165 aa9.94□□□□□ -0.82
VIPAS39-205ENST00000553691 EFCAB6Q5THR3 1501 aa9.93□□□□□ -0.82
VIPAS39-205ENST00000553691 TESPA1A2RU30 521 aaPredicted RBP9.93□□□□□ -0.82
VIPAS39-205ENST00000553691 C3orf80F5H4A9 247 aa9.93□□□□□ -0.82
VIPAS39-205ENST00000553691 NPDC1Q9NQX5 325 aaPredicted RBP9.93□□□□□ -0.82
VIPAS39-205ENST00000553691 CFAP65Q6ZU64 1925 aaKnown RBP9.93□□□□□ -0.82
VIPAS39-205ENST00000553691 UGGT1Q9NYU2 1555 aa9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 RRBP1Q9P2E9 1410 aaKnown RBP9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 ROCK1Q13464 1354 aa9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 PTPN5P54829 565 aa9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 FAM50AQ14320 339 aaKnown RBP9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 RBM26Q5T8P6 1007 aaKnown RBP9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 WNT2BQ93097 391 aa9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 ROBO1Q9Y6N7 1651 aa9.92□□□□□ -0.82
VIPAS39-205ENST00000553691 ANKRD50Q9ULJ7 1429 aa9.91□□□□□ -0.82
VIPAS39-205ENST00000553691 PADI6Q6TGC4 694 aa9.91□□□□□ -0.82
VIPAS39-205ENST00000553691 PPARGC1BQ86YN6 1023 aaKnown RBP9.91□□□□□ -0.82
VIPAS39-205ENST00000553691 MED14O60244 1454 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms