RNA–Protein interactions for RNA: ENST00000553622.5

CHD8-204, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

TSL 3

Gene CHD8, Length 633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-204ENST00000553622 TOM1O60784 492 aa13.3□□□□□ -0.28
CHD8-204ENST00000553622 PIP4K2BP78356 416 aa13.3□□□□□ -0.28
CHD8-204ENST00000553622 BRINP3Q76B58 766 aa13.3□□□□□ -0.28
CHD8-204ENST00000553622 NHSL1Q5SYE7 1610 aa13.3□□□□□ -0.28
CHD8-204ENST00000553622 PIK3C2AO00443 1686 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 AMER1Q5JTC6 1135 aaPredicted RBP13.29□□□□□ -0.28
CHD8-204ENST00000553622 LMOD2Q6P5Q4 547 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 KRT28Q7Z3Y7 464 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 NME9Q86XW9 330 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 MIER1Q8N108 512 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 GGNBP2Q9H3C7 697 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 TTC21BQ7Z4L5 1316 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 MAP2P11137 1827 aaKnown RBP13.29□□□□□ -0.28
CHD8-204ENST00000553622 IQSEC2Q5JU85 1478 aa13.29□□□□□ -0.28
CHD8-204ENST00000553622 PLEKHG5O94827 1062 aa13.28□□□□□ -0.28
CHD8-204ENST00000553622 NPHP3Q7Z494 1330 aa13.28□□□□□ -0.28
CHD8-204ENST00000553622 PHLPP1O60346 1717 aa13.27□□□□□ -0.28
CHD8-204ENST00000553622 TNNT2P45379 298 aaPredicted RBP13.27□□□□□ -0.29
CHD8-204ENST00000553622 NUTM2GQ5VZR2 741 aa13.27□□□□□ -0.29
CHD8-204ENST00000553622 MORC1Q86VD1 984 aa13.27□□□□□ -0.29
CHD8-204ENST00000553622 FYB1O15117 783 aa13.26□□□□□ -0.29
CHD8-204ENST00000553622 NSD2O96028 1365 aa13.26□□□□□ -0.29
CHD8-204ENST00000553622 ABTB2Q8N961 1025 aa13.26□□□□□ -0.29
CHD8-204ENST00000553622 TTC21AQ8NDW8 1320 aa13.26□□□□□ -0.29
CHD8-204ENST00000553622 PRKRIP1Q9H875 184 aaPredicted RBP13.26□□□□□ -0.29
CHD8-204ENST00000553622 ZRANB1Q9UGI0 708 aa13.26□□□□□ -0.29
CHD8-204ENST00000553622 MARF1Q9Y4F3 1742 aaKnown RBP13.26□□□□□ -0.29
CHD8-204ENST00000553622 ALS2Q96Q42 1657 aa13.25□□□□□ -0.29
CHD8-204ENST00000553622 NPC1L1Q9UHC9 1359 aa13.25□□□□□ -0.29
CHD8-204ENST00000553622 RALBP1Q15311 655 aa13.25□□□□□ -0.29
CHD8-204ENST00000553622 COG3Q96JB2 828 aa13.25□□□□□ -0.29
CHD8-204ENST00000553622 PXDNQ92626 1479 aa13.24□□□□□ -0.29
CHD8-204ENST00000553622 SSH2Q76I76 1423 aa13.24□□□□□ -0.29
CHD8-204ENST00000553622 BRD4O60885 1362 aaPredicted RBP13.23□□□□□ -0.29
CHD8-204ENST00000553622 PARD3Q8TEW0 1356 aa13.23□□□□□ -0.29
CHD8-204ENST00000553622 SOX12O15370 315 aa13.23□□□□□ -0.29
CHD8-204ENST00000553622 NLRP6P59044 892 aa13.23□□□□□ -0.29
CHD8-204ENST00000553622 USP54Q70EL1 1684 aa13.23□□□□□ -0.29
CHD8-204ENST00000553622 LTN1O94822 1766 aa13.22□□□□□ -0.29
CHD8-204ENST00000553622 AHDC1Q5TGY3 1603 aaPredicted RBP13.22□□□□□ -0.29
CHD8-204ENST00000553622 TNS3Q68CZ2 1445 aa13.22□□□□□ -0.29
CHD8-204ENST00000553622 SBNO1A3KN83 1393 aa13.21□□□□□ -0.29
CHD8-204ENST00000553622 MYBBP1AQ9BQG0 1328 aaKnown RBP13.21□□□□□ -0.29
CHD8-204ENST00000553622 OVOS2A0A0J9YW53 1432 aa13.2□□□□□ -0.3
CHD8-204ENST00000553622 OVOS2Q6IE36 1432 aa13.2□□□□□ -0.3
CHD8-204ENST00000553622 SOS2Q07890 1332 aaPredicted RBP13.19□□□□□ -0.3
CHD8-204ENST00000553622 PPP2R1AP30153 589 aa13.19□□□□□ -0.3
CHD8-204ENST00000553622 NLRP13Q86W25 1043 aa13.19□□□□□ -0.3
CHD8-204ENST00000553622 PHRF1Q9P1Y6 1649 aaKnown RBP13.19□□□□□ -0.3
CHD8-204ENST00000553622 ARHGEF10O15013 1369 aa13.19□□□□□ -0.3
CHD8-204ENST00000553622 USP31Q70CQ4 1352 aa13.19□□□□□ -0.3
CHD8-204ENST00000553622 SPATA31A3Q5VYP0 1347 aa13.18□□□□□ -0.3
CHD8-204ENST00000553622 COL16A1Q07092 1604 aaPredicted RBP13.18□□□□□ -0.3
CHD8-204ENST00000553622 ZBTB7CA1YPR0 619 aa13.18□□□□□ -0.3
CHD8-204ENST00000553622 PPM1GO15355 546 aaPredicted RBP13.18□□□□□ -0.3
CHD8-204ENST00000553622 ABCA3Q99758 1704 aa13.18□□□□□ -0.3
CHD8-204ENST00000553622 CRYBG1Q9Y4K1 1723 aa13.17□□□□□ -0.3
CHD8-204ENST00000553622 FBLN1P23142 703 aa13.17□□□□□ -0.3
CHD8-204ENST00000553622 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
CHD8-204ENST00000553622 MRS2Q9HD23 443 aa13.17□□□□□ -0.3
CHD8-204ENST00000553622 RGPD5Q99666 1765 aa13.16□□□□□ -0.3
CHD8-204ENST00000553622 MED1Q15648 1581 aaPredicted RBP13.15□□□□□ -0.3
CHD8-204ENST00000553622 CCER2I3L3R5 266 aa13.15□□□□□ -0.3
CHD8-204ENST00000553622 MTHFSP49914 203 aa13.15□□□□□ -0.3
CHD8-204ENST00000553622 RRS1Q15050 365 aaKnown RBP13.15□□□□□ -0.3
CHD8-204ENST00000553622 CABLES1Q8TDN4 633 aa13.15□□□□□ -0.3
CHD8-204ENST00000553622 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
CHD8-204ENST00000553622 SLIT3O75094 1523 aa13.14□□□□□ -0.31
CHD8-204ENST00000553622 CCDC184Q52MB2 194 aa13.14□□□□□ -0.31
CHD8-204ENST00000553622 NFAT5O94916 1531 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 PEAK1Q9H792 1746 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 KCNH5Q8NCM2 988 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 CFAP53Q96M91 514 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 EMILIN1Q9Y6C2 1016 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 USP19O94966 1318 aa13.13□□□□□ -0.31
CHD8-204ENST00000553622 SHPRHQ149N8 1683 aa13.12□□□□□ -0.31
CHD8-204ENST00000553622 AATKQ6ZMQ8 1374 aa13.12□□□□□ -0.31
CHD8-204ENST00000553622 AMPHP49418 695 aa13.12□□□□□ -0.31
CHD8-204ENST00000553622 POLKQ9UBT6 870 aa13.12□□□□□ -0.31
CHD8-204ENST00000553622 COL22A1Q8NFW1 1626 aaPredicted RBP13.12□□□□□ -0.31
CHD8-204ENST00000553622 GCP02774 474 aa13.11□□□□□ -0.31
CHD8-204ENST00000553622 ZC3H6P61129 1189 aaKnown RBP13.11□□□□□ -0.31
CHD8-204ENST00000553622 MAP3K19Q56UN5 1328 aa13.11□□□□□ -0.31
CHD8-204ENST00000553622 PNPLA6Q8IY17 1366 aa13.1□□□□□ -0.31
CHD8-204ENST00000553622 CDK12Q9NYV4 1490 aaPredicted RBP13.1□□□□□ -0.31
CHD8-204ENST00000553622 RGPD2P0DJD1 1756 aa13.09□□□□□ -0.31
CHD8-204ENST00000553622 NUTM2BA6NNL0 878 aaPredicted RBP13.09□□□□□ -0.31
CHD8-204ENST00000553622 NUTM2EB1AL46 878 aaPredicted RBP13.09□□□□□ -0.31
CHD8-204ENST00000553622 HSPA1LP34931 641 aa13.09□□□□□ -0.31
CHD8-204ENST00000553622 NUTM2AQ8IVF1 878 aaPredicted RBP13.09□□□□□ -0.31
CHD8-204ENST00000553622 FAM9BQ8IZU0 186 aa13.09□□□□□ -0.31
CHD8-204ENST00000553622 SMG6Q86US8 1419 aaKnown RBP13.08□□□□□ -0.32
CHD8-204ENST00000553622 WDR43Q15061 677 aaKnown RBP eCLIP13.08□□□□□ -0.32
CHD8-204ENST00000553622 FLT4P35916 1363 aa13.07□□□□□ -0.32
CHD8-204ENST00000553622 CHRNA2Q15822 529 aa13.07□□□□□ -0.32
CHD8-204ENST00000553622 LTV1Q96GA3 475 aaPredicted RBP13.07□□□□□ -0.32
CHD8-204ENST00000553622 KIAA0232Q92628 1395 aa13.07□□□□□ -0.32
CHD8-204ENST00000553622 JCADQ9P266 1359 aa13.07□□□□□ -0.32
CHD8-204ENST00000553622 COL3A1P02461 1466 aaPredicted RBP13.06□□□□□ -0.32
CHD8-204ENST00000553622 U2SURPO15042 1029 aaKnown RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms