RNA–Protein interactions for RNA: ENST00000553474.5

SHMT2-205, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2 BASIC

Gene SHMT2, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-205ENST00000553474 TCP11L2Q8N4U5 519 aa16.73■□□□□ 0.27
SHMT2-205ENST00000553474 CT47B1P0C2W7 299 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-205ENST00000553474 CABP2Q9NPB3 220 aa16.72■□□□□ 0.27
SHMT2-205ENST00000553474 METP08581 1390 aa16.72■□□□□ 0.27
SHMT2-205ENST00000553474 CHD2O14647 1828 aaKnown RBP16.72■□□□□ 0.27
SHMT2-205ENST00000553474 SRPK2P78362 688 aaKnown RBP16.72■□□□□ 0.27
SHMT2-205ENST00000553474 KIF20BQ96Q89 1820 aa16.71■□□□□ 0.27
SHMT2-205ENST00000553474 MYH16Q9H6N6 1097 aa16.71■□□□□ 0.27
SHMT2-205ENST00000553474 POGKQ9P215 609 aa16.7■□□□□ 0.26
SHMT2-205ENST00000553474 CD163L1Q9NR16 1453 aa16.7■□□□□ 0.26
SHMT2-205ENST00000553474 PRAM1Q96QH2 718 aa16.69■□□□□ 0.26
SHMT2-205ENST00000553474 PNNQ9H307 717 aaKnown RBP16.69■□□□□ 0.26
SHMT2-205ENST00000553474 STK26Q9P289 416 aa16.69■□□□□ 0.26
SHMT2-205ENST00000553474 ATP7BP35670 1465 aa16.69■□□□□ 0.26
SHMT2-205ENST00000553474 KNDC1Q76NI1 1749 aa16.69■□□□□ 0.26
SHMT2-205ENST00000553474 STRCP1A6NGW2 1772 aa16.69■□□□□ 0.26
SHMT2-205ENST00000553474 TNNT2P45379 298 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-205ENST00000553474 HDGFL2Q7Z4V5 671 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-205ENST00000553474 COL3A1P02461 1466 aaPredicted RBP16.68■□□□□ 0.26
SHMT2-205ENST00000553474 XRN1Q8IZH2 1706 aaKnown RBP16.68■□□□□ 0.26
SHMT2-205ENST00000553474 BCAR3O75815 825 aa16.68■□□□□ 0.26
SHMT2-205ENST00000553474 DDRGK1Q96HY6 314 aa16.68■□□□□ 0.26
SHMT2-205ENST00000553474 TBX22Q9Y458 520 aa16.68■□□□□ 0.26
SHMT2-205ENST00000553474 DMRT2Q9Y5R5 561 aa16.67■□□□□ 0.26
SHMT2-205ENST00000553474 PTPRUQ92729 1446 aa16.67■□□□□ 0.26
SHMT2-205ENST00000553474 CDC42BPGQ6DT37 1551 aa16.66■□□□□ 0.26
SHMT2-205ENST00000553474 PNPLA6Q8IY17 1366 aa16.66■□□□□ 0.26
SHMT2-205ENST00000553474 NWD1Q149M9 1564 aa16.65■□□□□ 0.26
SHMT2-205ENST00000553474 IL16Q14005 1332 aa16.65■□□□□ 0.26
SHMT2-205ENST00000553474 U2AF1L5P0DN76 240 aaPredicted RBP16.65■□□□□ 0.26
SHMT2-205ENST00000553474 RARSP54136 660 aaKnown RBP16.65■□□□□ 0.26
SHMT2-205ENST00000553474 U2AF1Q01081 240 aaKnown RBP eCLIP16.65■□□□□ 0.26
SHMT2-205ENST00000553474 VIRMAQ69YN4 1812 aaKnown RBP16.65■□□□□ 0.26
SHMT2-205ENST00000553474 FYB1O15117 783 aa16.64■□□□□ 0.25
SHMT2-205ENST00000553474 CANXP27824 592 aaKnown RBP16.64■□□□□ 0.25
SHMT2-205ENST00000553474 FAM161AQ3B820 660 aa16.64■□□□□ 0.25
SHMT2-205ENST00000553474 CLUAP1Q96AJ1 413 aa16.64■□□□□ 0.25
SHMT2-205ENST00000553474 CPS1P31327 1500 aa16.64■□□□□ 0.25
SHMT2-205ENST00000553474 MINK1Q8N4C8 1332 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-205ENST00000553474 PAK3O75914 559 aaPredicted RBP16.64■□□□□ 0.25
SHMT2-205ENST00000553474 PIK3R4Q99570 1358 aa16.63■□□□□ 0.25
SHMT2-205ENST00000553474 SAFB2Q14151 953 aaKnown RBP eCLIP16.63■□□□□ 0.25
SHMT2-205ENST00000553474 CDK19Q9BWU1 502 aa16.63■□□□□ 0.25
SHMT2-205ENST00000553474 AMOTL2Q9Y2J4 779 aa16.63■□□□□ 0.25
SHMT2-205ENST00000553474 ZNF335Q9H4Z2 1342 aaPredicted RBP16.62■□□□□ 0.25
SHMT2-205ENST00000553474 MAPK8IP3Q9UPT6 1336 aa16.62■□□□□ 0.25
SHMT2-205ENST00000553474 SIRT1Q96EB6 747 aa16.62■□□□□ 0.25
SHMT2-205ENST00000553474 NEUROD2Q15784 382 aa16.61■□□□□ 0.25
SHMT2-205ENST00000553474 PMFBP1Q8TBY8 1022 aa16.61■□□□□ 0.25
SHMT2-205ENST00000553474 PLEKHF1Q96S99 279 aa16.61■□□□□ 0.25
SHMT2-205ENST00000553474 KCNA6P17658 529 aa16.61■□□□□ 0.25
SHMT2-205ENST00000553474 TECPR2O15040 1411 aa16.6■□□□□ 0.25
SHMT2-205ENST00000553474 FAM135BQ49AJ0 1406 aa16.6■□□□□ 0.25
SHMT2-205ENST00000553474 GGNBP2Q9H3C7 697 aa16.6■□□□□ 0.25
SHMT2-205ENST00000553474 RRP7AQ9Y3A4 280 aaKnown RBP16.6■□□□□ 0.25
SHMT2-205ENST00000553474 ROBO2Q9HCK4 1378 aa16.59■□□□□ 0.25
SHMT2-205ENST00000553474 PTCH1Q13635 1447 aa16.59■□□□□ 0.25
SHMT2-205ENST00000553474 DIAPH1O60610 1272 aaKnown RBP16.58■□□□□ 0.24
SHMT2-205ENST00000553474 TMPOP42166 694 aaKnown RBP16.58■□□□□ 0.24
SHMT2-205ENST00000553474 NPM2Q86SE8 214 aaKnown RBP16.58■□□□□ 0.24
SHMT2-205ENST00000553474 BCL11AQ9H165 835 aa16.58■□□□□ 0.24
SHMT2-205ENST00000553474 NALCNQ8IZF0 1738 aa16.58■□□□□ 0.24
SHMT2-205ENST00000553474 EDC4Q6P2E9 1401 aaKnown RBP16.58■□□□□ 0.24
SHMT2-205ENST00000553474 FCHSD2O94868 740 aa16.57■□□□□ 0.24
SHMT2-205ENST00000553474 C8orf34Q49A92 452 aa16.57■□□□□ 0.24
SHMT2-205ENST00000553474 RBM33Q96EV2 1170 aaKnown RBP16.57■□□□□ 0.24
SHMT2-205ENST00000553474 CABP1Q9NZU7 370 aa16.57■□□□□ 0.24
SHMT2-205ENST00000553474 XIRP1Q702N8 1843 aaKnown RBP16.57■□□□□ 0.24
SHMT2-205ENST00000553474 CPSF1Q10570 1443 aaKnown RBP16.57■□□□□ 0.24
SHMT2-205ENST00000553474 WAPLQ7Z5K2 1190 aa16.56■□□□□ 0.24
SHMT2-205ENST00000553474 USP35Q9P2H5 1018 aa16.56■□□□□ 0.24
SHMT2-205ENST00000553474 COG6Q9Y2V7 657 aa16.56■□□□□ 0.24
SHMT2-205ENST00000553474 MAP2P11137 1827 aaKnown RBP16.55■□□□□ 0.24
SHMT2-205ENST00000553474 U2SURPO15042 1029 aaKnown RBP16.55■□□□□ 0.24
SHMT2-205ENST00000553474 FRAT1Q92837 279 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-205ENST00000553474 ZNF428Q96B54 188 aa16.55■□□□□ 0.24
SHMT2-205ENST00000553474 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-205ENST00000553474 MON2Q7Z3U7 1717 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 PPM1GO15355 546 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-205ENST00000553474 ZKSCAN2Q63HK3 967 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 PROSER2Q86WR7 435 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-205ENST00000553474 PANK1Q8TE04 598 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 AATKQ6ZMQ8 1374 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 NEFMP07197 916 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 C14orf37Q86TY3 774 aa16.54■□□□□ 0.24
SHMT2-205ENST00000553474 WASLO00401 505 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-205ENST00000553474 IGHDP01880 384 aa16.53■□□□□ 0.24
SHMT2-205ENST00000553474 RTL5Q5HYW3 569 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-205ENST00000553474 TRIM35Q9UPQ4 493 aa16.53■□□□□ 0.24
SHMT2-205ENST00000553474 PPIP5K1Q6PFW1 1433 aa16.52■□□□□ 0.24
SHMT2-205ENST00000553474 CDK12Q9NYV4 1490 aaPredicted RBP16.52■□□□□ 0.24
SHMT2-205ENST00000553474 AKAP12Q02952 1782 aa16.52■□□□□ 0.24
SHMT2-205ENST00000553474 LTBP4Q8N2S1 1624 aa16.52■□□□□ 0.23
SHMT2-205ENST00000553474 LRRC7Q96NW7 1537 aa16.52■□□□□ 0.23
SHMT2-205ENST00000553474 CALD1Q05682 793 aaKnown RBP16.51■□□□□ 0.23
SHMT2-205ENST00000553474 MVPQ14764 893 aaKnown RBP16.51■□□□□ 0.23
SHMT2-205ENST00000553474 RWDD1Q9H446 243 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-205ENST00000553474 TMEM94Q12767 1356 aa16.51■□□□□ 0.23
SHMT2-205ENST00000553474 ITSN1Q15811 1721 aa16.51■□□□□ 0.23
SHMT2-205ENST00000553474 RGS3P49796 1198 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 107.8 ms