RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	TBC1D2B	Q9UPU7	963 aa		13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	TRAK2	O60296	914 aa		13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	IFT57	Q9NWB7	429 aa		13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	ERBIN	Q96RT1	1412 aa		13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	AIMP1	Q12904	312 aa	Known RBP	13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	MNS1	Q8NEH6	495 aa		13.85	□□□□□ -0.19
SYNE2-208	ENST00000553289	RBM33	Q96EV2	1170 aa	Known RBP	13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	DHX8	Q14562	1220 aa	Known RBP	13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	CDR1	P51861	262 aa		13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	SDF4	Q9BRK5	362 aa		13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	MRC2	Q9UBG0	1479 aa		13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	SUPT6H	Q7KZ85	1726 aa	Known RBP	13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	ANKRD30B	Q9BXX2	1392 aa		13.84	□□□□□ -0.19
SYNE2-208	ENST00000553289	MAP7D2	Q96T17	732 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	NEK4	P51957	841 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	NBPF1	Q3BBV0	1214 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	PRAM1	Q96QH2	718 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	DAPK1	P53355	1430 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	PRM3	Q9NNZ6	103 aa		13.83	□□□□□ -0.2
SYNE2-208	ENST00000553289	MSH5	O43196	834 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	RAD21	O60216	631 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	ABTB2	Q8N961	1025 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	ATAD2	Q6PL18	1390 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	CCP110	O43303	1012 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	NOB1	Q9ULX3	412 aa	Known RBP	13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	ZNF396	Q96N95	335 aa	Predicted RBP	13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	SRCIN1	Q9C0H9	1055 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	FAM13B	Q9NYF5	915 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	ANKRD1	Q15327	319 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	NBPF8	Q3BBV2	869 aa		13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	CCDC43	Q96MW1	224 aa	Known RBP	13.82	□□□□□ -0.2
SYNE2-208	ENST00000553289	AEBP1	Q8IUX7	1158 aa		13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	KIN	O60870	393 aa	Known RBP	13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	AK7	Q96M32	723 aa		13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	TSPY26P	Q9H489	355 aa		13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	HMGXB3	Q12766	1538 aa		13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	ATF7IP	Q6VMQ6	1270 aa		13.81	□□□□□ -0.2
SYNE2-208	ENST00000553289	MVP	Q14764	893 aa	Known RBP	13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	CCDC173	Q0VFZ6	552 aa		13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	RUFY1	Q96T51	708 aa		13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	BACH2	Q9BYV9	841 aa		13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	PIP4K2A	P48426	406 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	KIF6	Q6ZMV9	814 aa		13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	TXNDC2	Q86VQ3	553 aa		13.8	□□□□□ -0.2
SYNE2-208	ENST00000553289	PDIA4	P13667	645 aa	Known RBP	13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	LRRCC1	Q9C099	1032 aa		13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	SLC3A2	P08195	630 aa	Known RBP	13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	CDK19	Q9BWU1	502 aa		13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	HDGFL1	Q5TGJ6	251 aa		13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	CAVIN1	Q6NZI2	390 aa	Known RBP	13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	SLC12A5	Q9H2X9	1139 aa		13.79	□□□□□ -0.2
SYNE2-208	ENST00000553289	HSP90B2P	Q58FF3	399 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	JMY	Q8N9B5	988 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	TOPBP1	Q92547	1522 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	SLC4A2	P04920	1241 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	CCDC27	Q2M243	656 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	TAT	P17735	454 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	ANO8	Q9HCE9	1232 aa	Predicted RBP	13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	FOSB	P53539	338 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	CYP46A1	Q9Y6A2	500 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	AKNA	Q7Z591	1439 aa		13.78	□□□□□ -0.2
SYNE2-208	ENST00000553289	HMGN5	P82970	282 aa	Known RBP	13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	CCDC158	Q5M9N0	1113 aa		13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	ERCC4	Q92889	916 aa	Predicted RBP	13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	TRIM5	Q9C035	493 aa		13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	WDR33	Q9C0J8	1336 aa	Known RBP	13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	BCAR3	O75815	825 aa		13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	NUTM2G	Q5VZR2	741 aa		13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289	VSIG10	Q8N0Z9	540 aa		13.77	□□□□□ -0.2
SYNE2-208	ENST00000553289		K7ELQ4	463 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	FCHSD2	O94868	740 aa		13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	FILIP1L	Q4L180	1135 aa		13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	THEMIS	Q8N1K5	641 aa	Predicted RBP	13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	SULT6B1	Q6IMI4	303 aa		13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	TSR2	Q969E8	191 aa	Known RBP	13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	FBXW7	Q969H0	707 aa		13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	DNAJC2	Q99543	621 aa	Known RBP	13.77	□□□□□ -0.21
SYNE2-208	ENST00000553289	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.76	□□□□□ -0.21
SYNE2-208	ENST00000553289	PRPF40A	O75400	957 aa	Known RBP	13.76	□□□□□ -0.21
SYNE2-208	ENST00000553289	TXLNA	P40222	546 aa		13.76	□□□□□ -0.21
SYNE2-208	ENST00000553289	SMARCE1	Q969G3	411 aa		13.76	□□□□□ -0.21
SYNE2-208	ENST00000553289	NAP1L1	P55209	391 aa	Known RBP	13.76	□□□□□ -0.21
SYNE2-208	ENST00000553289	CHD1L	Q86WJ1	897 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	CABP1	Q9NZU7	370 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	POLA1	P09884	1462 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	OFD1	O75665	1012 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	EPS15	P42566	896 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	ESCO1	Q5FWF5	840 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	RPAP2	Q8IXW5	612 aa	Predicted RBP	13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	GNL3L	Q9NVN8	582 aa	Known RBP	13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	CCDC141	Q6ZP82	1450 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	RNF214	Q8ND24	703 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	BICRA	Q9NZM4	1560 aa		13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	MEX3C	Q5U5Q3	659 aa	Known RBP	13.75	□□□□□ -0.21
SYNE2-208	ENST00000553289	STK38	Q15208	465 aa		13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	C1orf115	Q9H7X2	142 aa		13.74	□□□□□ -0.21

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