RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, humanhuman

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-208ENST00000552440 MOXD2PA6NHM9 499 aa7.06□□□□□ -1.28
USP44-208ENST00000552440 HPS1Q92902 700 aa7.06□□□□□ -1.28
USP44-208ENST00000552440 SIAH2O43255 324 aa7.05□□□□□ -1.28
USP44-208ENST00000552440 PRPF38BQ5VTL8 546 aaKnown RBP7.05□□□□□ -1.28
USP44-208ENST00000552440 INSM1Q01101 510 aaPredicted RBP7.04□□□□□ -1.28
USP44-208ENST00000552440 PTCRAQ6ISU1 281 aaPredicted RBP7.04□□□□□ -1.28
USP44-208ENST00000552440 UNC93B1Q9H1C4 597 aa7.04□□□□□ -1.28
USP44-208ENST00000552440 ZBTB3Q9H5J0 574 aa7.04□□□□□ -1.28
USP44-208ENST00000552440 NDUFV2P19404 249 aa7.04□□□□□ -1.28
USP44-208ENST00000552440 SLC16A10Q8TF71 515 aa7.04□□□□□ -1.28
USP44-208ENST00000552440 TBC1D2Q9BYX2 928 aa7.04□□□□□ -1.28
USP44-208ENST00000552440 SPTLC1O15269 473 aa7.03□□□□□ -1.28
USP44-208ENST00000552440 CAPN5O15484 640 aaPredicted RBP7.03□□□□□ -1.28
USP44-208ENST00000552440 SH3BP2P78314 561 aa7.03□□□□□ -1.28
USP44-208ENST00000552440 LCE2AQ5TA79 106 aaPredicted RBP7.02□□□□□ -1.29
USP44-208ENST00000552440 RSBN1LQ6PCB5 846 aaPredicted RBP7.02□□□□□ -1.29
USP44-208ENST00000552440 LYPD8Q6UX82 237 aa7.02□□□□□ -1.29
USP44-208ENST00000552440 NPAS3Q8IXF0 933 aa7.02□□□□□ -1.29
USP44-208ENST00000552440 FAM174AQ8TBP5 190 aa7.02□□□□□ -1.29
USP44-208ENST00000552440 TRIM66O15016 1216 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 ZNF511Q8NB15 262 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 ARMC2Q8NEN0 867 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 TERTO14746 1132 aaKnown RBP7.01□□□□□ -1.29
USP44-208ENST00000552440 WIPF1O43516 503 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 CTHP32929 405 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 TUSC1Q2TAM9 212 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 BAP1Q92560 729 aa7.01□□□□□ -1.29
USP44-208ENST00000552440 NFX1Q12986 1120 aaKnown RBP7□□□□□ -1.29
USP44-208ENST00000552440 RIC3Q7Z5B4 369 aa7□□□□□ -1.29
USP44-208ENST00000552440 PARP9Q8IXQ6 854 aa7□□□□□ -1.29
USP44-208ENST00000552440 STK17AQ9UEE5 414 aa7□□□□□ -1.29
USP44-208ENST00000552440 SNRPBP14678 240 aaKnown RBP6.99□□□□□ -1.29
USP44-208ENST00000552440 SCARF1Q14162 830 aa6.99□□□□□ -1.29
USP44-208ENST00000552440 RSPH6AQ9H0K4 717 aa6.99□□□□□ -1.29
USP44-208ENST00000552440 FAM181BA6NEQ2 426 aa6.98□□□□□ -1.29
USP44-208ENST00000552440 GPBP1L1Q9HC44 474 aaPredicted RBP6.98□□□□□ -1.29
USP44-208ENST00000552440 LINC01559Q495D7 138 aa6.97□□□□□ -1.29
USP44-208ENST00000552440 NUTM2BA6NNL0 878 aaPredicted RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 NUTM2EB1AL46 878 aaPredicted RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 NUTM2DQ5VT03 806 aaPredicted RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 BPHLQ86WA6 291 aaPredicted RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 NUTM2AQ8IVF1 878 aaPredicted RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 NXF1Q9UBU9 619 aaKnown RBP6.97□□□□□ -1.29
USP44-208ENST00000552440 HELBQ8NG08 1087 aaPredicted RBP6.96□□□□□ -1.3
USP44-208ENST00000552440 ADH1CP00326 375 aa6.95□□□□□ -1.3
USP44-208ENST00000552440 NR5A1Q13285 461 aa6.95□□□□□ -1.3
USP44-208ENST00000552440 NNTQ13423 1086 aa6.95□□□□□ -1.3
USP44-208ENST00000552440 IRF7Q92985 503 aa6.95□□□□□ -1.3
USP44-208ENST00000552440 CDK15Q96Q40 435 aa6.95□□□□□ -1.3
USP44-208ENST00000552440 PDE4DQ08499 809 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 AGERQ15109 404 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 NBPF14Q5TI25 921 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 PCDHB15Q9Y5E8 787 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 CFAP99D6REC4 459 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 IL27Q8NEV9 243 aa6.94□□□□□ -1.3
USP44-208ENST00000552440 GPKOWQ92917 476 aaPredicted RBP eCLIP6.94□□□□□ -1.3
USP44-208ENST00000552440 F12P00748 615 aaPredicted RBP6.93□□□□□ -1.3
USP44-208ENST00000552440 KDM4CQ9H3R0 1056 aa6.93□□□□□ -1.3
USP44-208ENST00000552440 UPP2O95045 317 aa6.92□□□□□ -1.3
USP44-208ENST00000552440 WDR4P57081 412 aaKnown RBP6.92□□□□□ -1.3
USP44-208ENST00000552440 TRIM46Q7Z4K8 759 aa6.92□□□□□ -1.3
USP44-208ENST00000552440 TLL2Q9Y6L7 1015 aa6.92□□□□□ -1.3
USP44-208ENST00000552440 MYSM1Q5VVJ2 828 aa6.92□□□□□ -1.3
USP44-208ENST00000552440 MRPL14Q6P1L8 145 aaKnown RBP6.92□□□□□ -1.3
USP44-208ENST00000552440 CCDC9Q9Y3X0 531 aaKnown RBP6.92□□□□□ -1.3
USP44-208ENST00000552440 LILRB3O75022 631 aa6.91□□□□□ -1.3
USP44-208ENST00000552440 ZFP42Q96MM3 310 aa6.91□□□□□ -1.3
USP44-208ENST00000552440 ZMYND15Q9H091 742 aa6.91□□□□□ -1.3
USP44-208ENST00000552440 BMP1P13497 986 aa6.9□□□□□ -1.3
USP44-208ENST00000552440 ARID5BQ14865 1188 aa6.9□□□□□ -1.3
USP44-208ENST00000552440 TSC1Q92574 1164 aa6.9□□□□□ -1.3
USP44-208ENST00000552440 TIMP2P16035 220 aa6.9□□□□□ -1.31
USP44-208ENST00000552440 CSPP1Q1MSJ5 1256 aa6.9□□□□□ -1.31
USP44-208ENST00000552440 CABLES1Q8TDN4 633 aa6.9□□□□□ -1.31
USP44-208ENST00000552440 MAP10Q9P2G4 905 aa6.9□□□□□ -1.31
USP44-208ENST00000552440 MAP4K5Q9Y4K4 846 aa6.9□□□□□ -1.31
USP44-208ENST00000552440 FOXJ1Q92949 421 aa6.89□□□□□ -1.31
USP44-208ENST00000552440 H3BM21 787 aa6.88□□□□□ -1.31
USP44-208ENST00000552440 CLK2P49760 499 aaKnown RBP6.88□□□□□ -1.31
USP44-208ENST00000552440 TRIM52Q96A61 297 aa6.88□□□□□ -1.31
USP44-208ENST00000552440 CDV3Q9UKY7 258 aaKnown RBP6.88□□□□□ -1.31
USP44-208ENST00000552440 ZIC2O95409 532 aaPredicted RBP6.87□□□□□ -1.31
USP44-208ENST00000552440 TRMT44Q8IYL2 757 aaKnown RBP6.87□□□□□ -1.31
USP44-208ENST00000552440 PNMA1Q8ND90 353 aa6.87□□□□□ -1.31
USP44-208ENST00000552440 KLF16Q9BXK1 252 aaPredicted RBP6.87□□□□□ -1.31
USP44-208ENST00000552440 LIMD1Q9UGP4 676 aa6.87□□□□□ -1.31
USP44-208ENST00000552440 EMILIN1Q9Y6C2 1016 aa6.87□□□□□ -1.31
USP44-208ENST00000552440 PURBQ96QR8 312 aaKnown RBP6.86□□□□□ -1.31
USP44-208ENST00000552440 C1QTNF2Q9BXJ5 285 aa6.86□□□□□ -1.31
USP44-208ENST00000552440 ZC3H4Q9UPT8 1303 aaKnown RBP6.86□□□□□ -1.31
USP44-208ENST00000552440 PER1O15534 1290 aaPredicted RBP6.85□□□□□ -1.31
USP44-208ENST00000552440 MAN1A2O60476 641 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 VASH1Q7L8A9 365 aaPredicted RBP6.85□□□□□ -1.31
USP44-208ENST00000552440 TSEN34Q9BSV6 310 aaKnown RBP6.85□□□□□ -1.31
USP44-208ENST00000552440 LOC105371045A0A1W2PR82 267 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 ZBTB7CA1YPR0 619 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 GRM5P41594 1212 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 QPCTQ16769 361 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 SH3RF1Q7Z6J0 888 aa6.85□□□□□ -1.31
USP44-208ENST00000552440 PDXDC2PQ6P474 469 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 83.1 ms