RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 BRINP3Q76B58 766 aa13.14□□□□□ -0.31
LIMA1-211ENST00000552338 KNSTRNQ9Y448 316 aa13.14□□□□□ -0.31
LIMA1-211ENST00000552338 AHDC1Q5TGY3 1603 aaPredicted RBP13.13□□□□□ -0.31
LIMA1-211ENST00000552338 ALS2Q96Q42 1657 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 SBNO1A3KN83 1393 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 USP31Q70CQ4 1352 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 PMFBP1Q8TBY8 1022 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 CGNL1Q0VF96 1302 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 NPHP3Q7Z494 1330 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 TTC21BQ7Z4L5 1316 aa13.13□□□□□ -0.31
LIMA1-211ENST00000552338 ROBO1Q9Y6N7 1651 aa13.12□□□□□ -0.31
LIMA1-211ENST00000552338 PXDNQ92626 1479 aa13.12□□□□□ -0.31
LIMA1-211ENST00000552338 FYB1O15117 783 aa13.12□□□□□ -0.31
LIMA1-211ENST00000552338 MAPK8IP2Q13387 824 aaPredicted RBP13.12□□□□□ -0.31
LIMA1-211ENST00000552338 NGDNQ8NEJ9 315 aaKnown RBP13.12□□□□□ -0.31
LIMA1-211ENST00000552338 SOS2Q07890 1332 aaPredicted RBP13.12□□□□□ -0.31
LIMA1-211ENST00000552338 MARF1Q9Y4F3 1742 aaKnown RBP13.11□□□□□ -0.31
LIMA1-211ENST00000552338 PARD3Q8TEW0 1356 aa13.11□□□□□ -0.31
LIMA1-211ENST00000552338 PIK3C2AO00443 1686 aa13.1□□□□□ -0.31
LIMA1-211ENST00000552338 RALBP1Q15311 655 aa13.1□□□□□ -0.31
LIMA1-211ENST00000552338 PRKRIP1Q9H875 184 aaPredicted RBP13.1□□□□□ -0.31
LIMA1-211ENST00000552338 OVOS2A0A0J9YW53 1432 aa13.09□□□□□ -0.31
LIMA1-211ENST00000552338 FOXO3O43524 673 aa13.09□□□□□ -0.31
LIMA1-211ENST00000552338 PSME1Q06323 249 aa13.09□□□□□ -0.31
LIMA1-211ENST00000552338 OVOS2Q6IE36 1432 aa13.09□□□□□ -0.31
LIMA1-211ENST00000552338 KRT28Q7Z3Y7 464 aa13.08□□□□□ -0.32
LIMA1-211ENST00000552338 CRYBG1Q9Y4K1 1723 aa13.07□□□□□ -0.32
LIMA1-211ENST00000552338 MED1Q15648 1581 aaPredicted RBP13.07□□□□□ -0.32
LIMA1-211ENST00000552338 AATKQ6ZMQ8 1374 aa13.07□□□□□ -0.32
LIMA1-211ENST00000552338 MAP2P11137 1827 aaKnown RBP13.06□□□□□ -0.32
LIMA1-211ENST00000552338 ANP32CO43423 234 aa13.06□□□□□ -0.32
LIMA1-211ENST00000552338 SPATA31A3Q5VYP0 1347 aa13.06□□□□□ -0.32
LIMA1-211ENST00000552338 SLIT3O75094 1523 aa13.05□□□□□ -0.32
LIMA1-211ENST00000552338 COL16A1Q07092 1604 aaPredicted RBP13.05□□□□□ -0.32
LIMA1-211ENST00000552338 TNS3Q68CZ2 1445 aa13.05□□□□□ -0.32
LIMA1-211ENST00000552338 COL22A1Q8NFW1 1626 aaPredicted RBP13.04□□□□□ -0.32
LIMA1-211ENST00000552338 PHRF1Q9P1Y6 1649 aaKnown RBP13.04□□□□□ -0.32
LIMA1-211ENST00000552338 USP19O94966 1318 aa13.04□□□□□ -0.32
LIMA1-211ENST00000552338 ARHGEF10O15013 1369 aa13.04□□□□□ -0.32
LIMA1-211ENST00000552338 PHLPP1O60346 1717 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 UBAP1LF5GYI3 381 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 CCER2I3L3R5 266 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 NLRP13Q86W25 1043 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 NME9Q86XW9 330 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 MYBBP1AQ9BQG0 1328 aaKnown RBP13.03□□□□□ -0.32
LIMA1-211ENST00000552338 INSRP06213 1382 aa13.03□□□□□ -0.32
LIMA1-211ENST00000552338 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMA1-211ENST00000552338 LRRC59Q96AG4 307 aaKnown RBP13.02□□□□□ -0.33
LIMA1-211ENST00000552338 COG3Q96JB2 828 aa13.02□□□□□ -0.33
LIMA1-211ENST00000552338 GGNBP2Q9H3C7 697 aa13.02□□□□□ -0.33
LIMA1-211ENST00000552338 SMG6Q86US8 1419 aaKnown RBP13.02□□□□□ -0.33
LIMA1-211ENST00000552338 CC2D1BQ5T0F9 858 aaKnown RBP13.01□□□□□ -0.33
LIMA1-211ENST00000552338 ABTB2Q8N961 1025 aa13.01□□□□□ -0.33
LIMA1-211ENST00000552338 KIF24Q5T7B8 1368 aa13.01□□□□□ -0.33
LIMA1-211ENST00000552338 NFAT5O94916 1531 aa13□□□□□ -0.33
LIMA1-211ENST00000552338 PNPLA6Q8IY17 1366 aa13□□□□□ -0.33
LIMA1-211ENST00000552338 NLRP6P59044 892 aa13□□□□□ -0.33
LIMA1-211ENST00000552338 MORC1Q86VD1 984 aa13□□□□□ -0.33
LIMA1-211ENST00000552338 DDX17Q92841 729 aaKnown RBP13□□□□□ -0.33
LIMA1-211ENST00000552338 ABCA3Q99758 1704 aa12.99□□□□□ -0.33
LIMA1-211ENST00000552338 SHPRHQ149N8 1683 aa12.99□□□□□ -0.33
LIMA1-211ENST00000552338 PPP2R1AP30153 589 aa12.99□□□□□ -0.33
LIMA1-211ENST00000552338 MIER1Q8N108 512 aa12.99□□□□□ -0.33
LIMA1-211ENST00000552338 KCNH5Q8NCM2 988 aa12.99□□□□□ -0.33
LIMA1-211ENST00000552338 ABCC6O95255 1503 aa12.98□□□□□ -0.33
LIMA1-211ENST00000552338 PAK3O75914 559 aaPredicted RBP12.98□□□□□ -0.33
LIMA1-211ENST00000552338 ZRANB1Q9UGI0 708 aa12.98□□□□□ -0.33
LIMA1-211ENST00000552338 XPCQ01831 940 aaPredicted RBP12.97□□□□□ -0.33
LIMA1-211ENST00000552338 POLKQ9UBT6 870 aa12.97□□□□□ -0.33
LIMA1-211ENST00000552338 LTN1O94822 1766 aa12.97□□□□□ -0.33
LIMA1-211ENST00000552338 COL18A1P39060 1754 aa12.97□□□□□ -0.33
LIMA1-211ENST00000552338 CPDO75976 1380 aa12.96□□□□□ -0.33
LIMA1-211ENST00000552338 GCP02774 474 aa12.96□□□□□ -0.33
LIMA1-211ENST00000552338 CDK12Q9NYV4 1490 aaPredicted RBP12.95□□□□□ -0.34
LIMA1-211ENST00000552338 PEAK1Q9H792 1746 aa12.94□□□□□ -0.34
LIMA1-211ENST00000552338 ARHGEF25Q86VW2 580 aa12.94□□□□□ -0.34
LIMA1-211ENST00000552338 RTL1A6NKG5 1358 aa12.94□□□□□ -0.34
LIMA1-211ENST00000552338 COL3A1P02461 1466 aaPredicted RBP12.93□□□□□ -0.34
LIMA1-211ENST00000552338 MTHFSP49914 203 aa12.93□□□□□ -0.34
LIMA1-211ENST00000552338 PIP4K2BP78356 416 aa12.93□□□□□ -0.34
LIMA1-211ENST00000552338 JCADQ9P266 1359 aa12.93□□□□□ -0.34
LIMA1-211ENST00000552338 MAP3K19Q56UN5 1328 aa12.92□□□□□ -0.34
LIMA1-211ENST00000552338 LMO7Q8WWI1 1683 aa12.91□□□□□ -0.34
LIMA1-211ENST00000552338 FLT4P35916 1363 aa12.91□□□□□ -0.34
LIMA1-211ENST00000552338 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
LIMA1-211ENST00000552338 NUTM2GQ5VZR2 741 aa12.9□□□□□ -0.34
LIMA1-211ENST00000552338 IP6K1Q92551 441 aa12.9□□□□□ -0.34
LIMA1-211ENST00000552338 SPATA31A6Q5VVP1 1343 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 RGPD5Q99666 1765 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 RGPD1P0DJD0 1748 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 FBLN1P23142 703 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 CCDC184Q52MB2 194 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 PPP4R3CPQ6ZMV5 832 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 PNISRQ8TF01 805 aaKnown RBP12.89□□□□□ -0.35
LIMA1-211ENST00000552338 FBXO41Q8TF61 875 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 EMILIN1Q9Y6C2 1016 aa12.89□□□□□ -0.35
LIMA1-211ENST00000552338 HOXC9P31274 260 aa12.88□□□□□ -0.35
LIMA1-211ENST00000552338 RRS1Q15050 365 aaKnown RBP12.88□□□□□ -0.35
LIMA1-211ENST00000552338 LMOD2Q6P5Q4 547 aa12.88□□□□□ -0.35
LIMA1-211ENST00000552338 CFAP53Q96M91 514 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms