RNA–Protein interactions for RNA: ENST00000551486.1

LIMA1-207, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-207ENST00000551486 SYMPKQ92797 1274 aaKnown RBP5.03□□□□□ -1.6
LIMA1-207ENST00000551486 UNC93B1Q9H1C4 597 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 TLL2Q9Y6L7 1015 aa5.03□□□□□ -1.6
LIMA1-207ENST00000551486 GUCA2AQ02747 115 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 KCNH2Q12809 1159 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 C6orf118Q5T5N4 469 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 ZNF511Q8NB15 262 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 PSMG3-AS1Q96PY0 264 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 EVA1BQ9NVM1 165 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 ADAMTS8Q9UP79 889 aa5.02□□□□□ -1.61
LIMA1-207ENST00000551486 ZIC2O95409 532 aaPredicted RBP5.01□□□□□ -1.61
LIMA1-207ENST00000551486 FDX1P10109 184 aa5.01□□□□□ -1.61
LIMA1-207ENST00000551486 BMP2P12643 396 aa5.01□□□□□ -1.61
LIMA1-207ENST00000551486 FOXK2Q01167 660 aa5.01□□□□□ -1.61
LIMA1-207ENST00000551486 MAP2K5Q13163 448 aa5.01□□□□□ -1.61
LIMA1-207ENST00000551486 ARID5BQ14865 1188 aa5.01□□□□□ -1.61
LIMA1-207ENST00000551486 SPTLC1O15269 473 aa5□□□□□ -1.61
LIMA1-207ENST00000551486 CLCN1P35523 988 aa5□□□□□ -1.61
LIMA1-207ENST00000551486 GSK3AP49840 483 aa5□□□□□ -1.61
LIMA1-207ENST00000551486 MARSP56192 900 aaKnown RBP5□□□□□ -1.61
LIMA1-207ENST00000551486 NR5A1Q13285 461 aa5□□□□□ -1.61
LIMA1-207ENST00000551486 GPAT2Q6NUI2 795 aa5□□□□□ -1.61
LIMA1-207ENST00000551486 DNMT3AQ9Y6K1 912 aaPredicted RBP5□□□□□ -1.61
LIMA1-207ENST00000551486 TULP1O00294 542 aaPredicted RBP4.99□□□□□ -1.61
LIMA1-207ENST00000551486 IRF6O14896 467 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 KANK3Q6NY19 840 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 SVOPQ8N4V2 548 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 CNTNAP3BQ96NU0 1288 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 CNTNAP3Q9BZ76 1288 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 GPCPD1Q9NPB8 672 aa4.99□□□□□ -1.61
LIMA1-207ENST00000551486 MINK1Q8N4C8 1332 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-207ENST00000551486 SPDYE5A6NIY4 337 aa4.98□□□□□ -1.61
LIMA1-207ENST00000551486 CTHP32929 405 aa4.98□□□□□ -1.61
LIMA1-207ENST00000551486 ZNF800Q2TB10 664 aaPredicted RBP eCLIP4.98□□□□□ -1.61
LIMA1-207ENST00000551486 KLF16Q9BXK1 252 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-207ENST00000551486 IRS1P35568 1242 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 AGERQ15109 404 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 DESI1Q6ICB0 168 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 LINC00528Q8N1L1 170 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 PRR7Q8TB68 274 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 ITPKCQ96DU7 683 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 SCARF2Q96GP6 870 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-207ENST00000551486 CDK15Q96Q40 435 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 ZFAND3Q9H8U3 227 aa4.97□□□□□ -1.61
LIMA1-207ENST00000551486 TSEN34Q9BSV6 310 aaKnown RBP4.96□□□□□ -1.62
LIMA1-207ENST00000551486 COL25A1Q9BXS0 654 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-207ENST00000551486 FAM217BQ9NTX9 383 aaPredicted RBP4.96□□□□□ -1.62
LIMA1-207ENST00000551486 MTMR2Q13614 643 aa4.95□□□□□ -1.62
LIMA1-207ENST00000551486 PCDHGC3Q9UN70 934 aa4.95□□□□□ -1.62
LIMA1-207ENST00000551486 SOS2Q07890 1332 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-207ENST00000551486 TTLL8A6PVC2 850 aa4.94□□□□□ -1.62
LIMA1-207ENST00000551486 ZNF385CQ66K41 422 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-207ENST00000551486 BPHLQ86WA6 291 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-207ENST00000551486 MEIOBQ8N635 442 aa4.94□□□□□ -1.62
LIMA1-207ENST00000551486 GPR161Q8N6U8 529 aaKnown RBP4.94□□□□□ -1.62
LIMA1-207ENST00000551486 NANOS1Q8WY41 292 aaKnown RBP4.94□□□□□ -1.62
LIMA1-207ENST00000551486 DNMT3LQ9UJW3 386 aa4.94□□□□□ -1.62
LIMA1-207ENST00000551486 KRT76Q01546 638 aa4.93□□□□□ -1.62
LIMA1-207ENST00000551486 MAP3K10Q02779 954 aa4.93□□□□□ -1.62
LIMA1-207ENST00000551486 PTSQ03393 145 aa4.93□□□□□ -1.62
LIMA1-207ENST00000551486 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
LIMA1-207ENST00000551486 EMILIN1Q9Y6C2 1016 aa4.93□□□□□ -1.62
LIMA1-207ENST00000551486 LYPD8Q6UX82 237 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 SV2AQ7L0J3 742 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 ARMC2Q8NEN0 867 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 FOXJ1Q92949 421 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 CCDC102AQ96A19 550 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 RTN4Q9NQC3 1192 aaKnown RBP4.92□□□□□ -1.62
LIMA1-207ENST00000551486 ENAMQ9NRM1 1142 aa4.92□□□□□ -1.62
LIMA1-207ENST00000551486 MSTNO14793 375 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 NR3C2P08235 984 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 SLURP2P0DP57 97 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 NDUFV2P19404 249 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 GRM5P41594 1212 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 CCDC155Q8N6L0 562 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 SPIRE2Q8WWL2 714 aa4.91□□□□□ -1.62
LIMA1-207ENST00000551486 CDC14CA4D256 554 aa4.9□□□□□ -1.63
LIMA1-207ENST00000551486 FIGNL2A6NMB9 653 aa4.9□□□□□ -1.63
LIMA1-207ENST00000551486 PHF20L1A8MW92 1017 aa4.9□□□□□ -1.63
LIMA1-207ENST00000551486 SSTR3P32745 418 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-207ENST00000551486 DIXDC1Q155Q3 683 aa4.9□□□□□ -1.63
LIMA1-207ENST00000551486 VASH1Q7L8A9 365 aaPredicted RBP4.9□□□□□ -1.63
LIMA1-207ENST00000551486 PGPEP1Q9NXJ5 209 aa4.9□□□□□ -1.63
LIMA1-207ENST00000551486 MOXD2PA6NHM9 499 aa4.89□□□□□ -1.63
LIMA1-207ENST00000551486 ARHGEF15O94989 841 aa4.89□□□□□ -1.63
LIMA1-207ENST00000551486 FSHRP23945 695 aa4.89□□□□□ -1.63
LIMA1-207ENST00000551486 VWA5B2Q8N398 1253 aa4.89□□□□□ -1.63
LIMA1-207ENST00000551486 KRTAP4-8A0A0G2JLE6 195 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 ITGA6P23229 1130 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 GJA5P36382 358 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 RNFT1Q5M7Z0 435 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 NBPF14Q5TI25 921 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 PODNQ7Z5L7 613 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 CCDC116Q8IYX3 515 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 WHAMMQ8TF30 809 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 MAP4K5Q9Y4K4 846 aa4.88□□□□□ -1.63
LIMA1-207ENST00000551486 ADAM23O75077 832 aa4.87□□□□□ -1.63
LIMA1-207ENST00000551486 GALNT6Q8NCL4 622 aa4.87□□□□□ -1.63
LIMA1-207ENST00000551486 KRTAP9-9Q9BYP9 154 aa4.87□□□□□ -1.63
LIMA1-207ENST00000551486 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms