RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 NHSL1Q5SYE7 1610 aa11.54□□□□□ -0.56
NEK3-201ENST00000550331 ZNF326Q5BKZ1 582 aaKnown RBP11.54□□□□□ -0.56
NEK3-201ENST00000550331 NEXMIFQ5QGS0 1516 aa11.53□□□□□ -0.56
NEK3-201ENST00000550331 ASXL1Q8IXJ9 1541 aa11.53□□□□□ -0.56
NEK3-201ENST00000550331 METP08581 1390 aa11.53□□□□□ -0.56
NEK3-201ENST00000550331 HFM1A2PYH4 1435 aa11.52□□□□□ -0.56
NEK3-201ENST00000550331 C8orf37Q96NL8 207 aa11.52□□□□□ -0.57
NEK3-201ENST00000550331 SETD5Q9C0A6 1442 aa11.52□□□□□ -0.57
NEK3-201ENST00000550331 RBM6P78332 1123 aaKnown RBP11.51□□□□□ -0.57
NEK3-201ENST00000550331 QTRT2Q9H974 415 aaKnown RBP11.51□□□□□ -0.57
NEK3-201ENST00000550331 MST1RQ04912 1400 aa11.51□□□□□ -0.57
NEK3-201ENST00000550331 ADGRL3Q9HAR2 1447 aa11.51□□□□□ -0.57
NEK3-201ENST00000550331 LRRC59Q96AG4 307 aaKnown RBP11.49□□□□□ -0.57
NEK3-201ENST00000550331 VGFO15240 615 aaPredicted RBP11.48□□□□□ -0.57
NEK3-201ENST00000550331 NUBP1P53384 320 aa11.48□□□□□ -0.57
NEK3-201ENST00000550331 L3MBTL3Q96JM7 780 aaPredicted RBP11.48□□□□□ -0.57
NEK3-201ENST00000550331 ATAD2Q6PL18 1390 aa11.48□□□□□ -0.57
NEK3-201ENST00000550331 PNPLA6Q8IY17 1366 aa11.48□□□□□ -0.57
NEK3-201ENST00000550331 PTCH1Q13635 1447 aa11.48□□□□□ -0.57
NEK3-201ENST00000550331 PRAG1Q86YV5 1406 aa11.48□□□□□ -0.57
NEK3-201ENST00000550331 RPGRIP1LQ68CZ1 1315 aa11.47□□□□□ -0.57
NEK3-201ENST00000550331 FAM212AQ96EL1 285 aa11.47□□□□□ -0.57
NEK3-201ENST00000550331 NGLY1Q96IV0 654 aa11.47□□□□□ -0.57
NEK3-201ENST00000550331 ZBTB47Q9UFB7 747 aaPredicted RBP11.47□□□□□ -0.57
NEK3-201ENST00000550331 ADAMTS2O95450 1211 aa11.46□□□□□ -0.57
NEK3-201ENST00000550331 PDCD7Q8N8D1 485 aaKnown RBP11.46□□□□□ -0.57
NEK3-201ENST00000550331 DDX17Q92841 729 aaKnown RBP11.46□□□□□ -0.57
NEK3-201ENST00000550331 KIF1BO60333 1816 aa11.45□□□□□ -0.58
NEK3-201ENST00000550331 NALCNQ8IZF0 1738 aa11.45□□□□□ -0.58
NEK3-201ENST00000550331 ROBO2Q9HCK4 1378 aa11.43□□□□□ -0.58
NEK3-201ENST00000550331 C1orf167Q5SNV9 1468 aa11.43□□□□□ -0.58
NEK3-201ENST00000550331 USP21Q9UK80 565 aa11.42□□□□□ -0.58
NEK3-201ENST00000550331 EP400Q96L91 3159 aa11.42□□□□□ -0.58
NEK3-201ENST00000550331 PLCD3Q8N3E9 789 aa11.41□□□□□ -0.58
NEK3-201ENST00000550331 TRPC5Q9UL62 973 aaPredicted RBP11.41□□□□□ -0.58
NEK3-201ENST00000550331 LAMC1P11047 1609 aa11.41□□□□□ -0.58
NEK3-201ENST00000550331 CCDC144AA2RUR9 1427 aa11.41□□□□□ -0.58
NEK3-201ENST00000550331 PPLO60437 1756 aa11.39□□□□□ -0.59
NEK3-201ENST00000550331 ATRNO75882 1429 aa11.39□□□□□ -0.59
NEK3-201ENST00000550331 SPATA31E1Q6ZUB1 1445 aa11.39□□□□□ -0.59
NEK3-201ENST00000550331 ANKRD30BQ9BXX2 1392 aa11.39□□□□□ -0.59
NEK3-201ENST00000550331 SOS2Q07890 1332 aaPredicted RBP11.38□□□□□ -0.59
NEK3-201ENST00000550331 ACIN1Q9UKV3 1341 aaKnown RBP11.38□□□□□ -0.59
NEK3-201ENST00000550331 MARF1Q9Y4F3 1742 aaKnown RBP11.38□□□□□ -0.59
NEK3-201ENST00000550331 CDC42BPGQ6DT37 1551 aa11.38□□□□□ -0.59
NEK3-201ENST00000550331 TECPR2O15040 1411 aa11.38□□□□□ -0.59
NEK3-201ENST00000550331 CCDC125Q86Z20 511 aa11.37□□□□□ -0.59
NEK3-201ENST00000550331 FNBP4Q8N3X1 1017 aaPredicted RBP11.37□□□□□ -0.59
NEK3-201ENST00000550331 MPHOSPH9Q99550 1183 aa11.37□□□□□ -0.59
NEK3-201ENST00000550331 COL22A1Q8NFW1 1626 aaPredicted RBP11.37□□□□□ -0.59
NEK3-201ENST00000550331 ADGRF5Q8IZF2 1346 aa11.36□□□□□ -0.59
NEK3-201ENST00000550331 ORAI2Q96SN7 254 aa11.36□□□□□ -0.59
NEK3-201ENST00000550331 LRPPRCP42704 1394 aaKnown RBP11.36□□□□□ -0.59
NEK3-201ENST00000550331 PIK3C2GO75747 1445 aa11.35□□□□□ -0.59
NEK3-201ENST00000550331 HOXB1P14653 301 aaPredicted RBP11.35□□□□□ -0.59
NEK3-201ENST00000550331 NPHP3Q7Z494 1330 aa11.35□□□□□ -0.59
NEK3-201ENST00000550331 ABCC11Q96J66 1382 aa11.34□□□□□ -0.59
NEK3-201ENST00000550331 RGL3Q3MIN7 710 aa11.34□□□□□ -0.59
NEK3-201ENST00000550331 ERBB3P21860 1342 aa11.34□□□□□ -0.59
NEK3-201ENST00000550331 BRWD3Q6RI45 1802 aa11.33□□□□□ -0.6
NEK3-201ENST00000550331 IFT172Q9UG01 1749 aa11.33□□□□□ -0.6
NEK3-201ENST00000550331 HOXB3P14651 431 aaPredicted RBP11.33□□□□□ -0.6
NEK3-201ENST00000550331 MYOM2P54296 1465 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 BCL9LQ86UU0 1499 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 PXDNQ92626 1479 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.32□□□□□ -0.6
NEK3-201ENST00000550331 PTGER2P43116 358 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 ESCO1Q5FWF5 840 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 KNDC1Q76NI1 1749 aa11.32□□□□□ -0.6
NEK3-201ENST00000550331 MKRN3Q13064 507 aaKnown RBP11.31□□□□□ -0.6
NEK3-201ENST00000550331 SIRT1Q96EB6 747 aa11.31□□□□□ -0.6
NEK3-201ENST00000550331 GJD4Q96KN9 370 aaPredicted RBP11.31□□□□□ -0.6
NEK3-201ENST00000550331 STK26Q9P289 416 aa11.31□□□□□ -0.6
NEK3-201ENST00000550331 BLMP54132 1417 aaPredicted RBP11.31□□□□□ -0.6
NEK3-201ENST00000550331 YTHDC2Q9H6S0 1430 aaKnown RBP11.31□□□□□ -0.6
NEK3-201ENST00000550331 NRXN1Q9ULB1 1477 aa11.31□□□□□ -0.6
NEK3-201ENST00000550331 LRP5O75197 1615 aa11.31□□□□□ -0.6
NEK3-201ENST00000550331 WAPLQ7Z5K2 1190 aa11.3□□□□□ -0.6
NEK3-201ENST00000550331 PLEKHH1Q9ULM0 1364 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 GLI3P10071 1580 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 FOXO3O43524 673 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 GOLGA2Q08379 1002 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 TMEM132EQ6IEE7 984 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 ZNF710Q8N1W2 664 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 C14orf93Q9H972 538 aaKnown RBP11.29□□□□□ -0.6
NEK3-201ENST00000550331 PCDHB8Q9UN66 801 aa11.29□□□□□ -0.6
NEK3-201ENST00000550331 RALGAPBQ86X10 1494 aa11.28□□□□□ -0.6
NEK3-201ENST00000550331 SF3B2Q13435 895 aaKnown RBP11.28□□□□□ -0.6
NEK3-201ENST00000550331 DEFB132Q7Z7B7 95 aa11.28□□□□□ -0.6
NEK3-201ENST00000550331 KIF1AQ12756 1690 aa11.27□□□□□ -0.6
NEK3-201ENST00000550331 XPCQ01831 940 aaPredicted RBP11.27□□□□□ -0.61
NEK3-201ENST00000550331 DHX57Q6P158 1386 aaKnown RBP11.27□□□□□ -0.61
NEK3-201ENST00000550331 RAB3GAP2Q9H2M9 1393 aa11.27□□□□□ -0.61
NEK3-201ENST00000550331 FMN2Q9NZ56 1722 aa11.26□□□□□ -0.61
NEK3-201ENST00000550331 PYGBP11216 843 aa11.26□□□□□ -0.61
NEK3-201ENST00000550331 UNC5CLQ8IV45 518 aa11.26□□□□□ -0.61
NEK3-201ENST00000550331 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.26□□□□□ -0.612e-7■■□□□ 13.7
NEK3-201ENST00000550331 SLIT2O94813 1529 aa11.25□□□□□ -0.61
NEK3-201ENST00000550331 DLC1Q96QB1 1528 aa11.25□□□□□ -0.61
NEK3-201ENST00000550331 NUTM2FA1L443 756 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms