RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 GPRASP1Q5JY77 1395 aa17.05■□□□□ 0.32
SMARCD1-208ENST00000550280 EIF3AQ14152 1382 aaKnown RBP17.04■□□□□ 0.32
SMARCD1-208ENST00000550280 SPATA31A5Q5VU36 1347 aa17.04■□□□□ 0.32
SMARCD1-208ENST00000550280 SPATA31A7Q8IWB4 1347 aa17.04■□□□□ 0.32
SMARCD1-208ENST00000550280 FAM182BQ5T319 152 aa17.04■□□□□ 0.32
SMARCD1-208ENST00000550280 THSD7AQ9UPZ6 1657 aa17.04■□□□□ 0.32
SMARCD1-208ENST00000550280 NGDNQ8NEJ9 315 aaKnown RBP17.02■□□□□ 0.32
SMARCD1-208ENST00000550280 NUDT16Q96DE0 195 aaKnown RBP17.02■□□□□ 0.32
SMARCD1-208ENST00000550280 KIAA0232Q92628 1395 aa17.01■□□□□ 0.31
SMARCD1-208ENST00000550280 A0A0G2JS52 829 aa17■□□□□ 0.31
SMARCD1-208ENST00000550280 MYT1Q01538 1121 aa17■□□□□ 0.31
SMARCD1-208ENST00000550280 SF3B2Q13435 895 aaKnown RBP17■□□□□ 0.31
SMARCD1-208ENST00000550280 STAC3Q96MF2 364 aa17■□□□□ 0.31
SMARCD1-208ENST00000550280 TOPAZ1Q8N9V7 1692 aa17■□□□□ 0.31
SMARCD1-208ENST00000550280 PHRF1Q9P1Y6 1649 aaKnown RBP16.99■□□□□ 0.31
SMARCD1-208ENST00000550280 PAK3O75914 559 aaPredicted RBP16.99■□□□□ 0.31
SMARCD1-208ENST00000550280 HRCP23327 699 aa16.99■□□□□ 0.31
SMARCD1-208ENST00000550280 CHRNA2Q15822 529 aa16.99■□□□□ 0.31
SMARCD1-208ENST00000550280 POLR3AO14802 1390 aaPredicted RBP16.99■□□□□ 0.31
SMARCD1-208ENST00000550280 PSDA5PKW4 1024 aaPredicted RBP16.98■□□□□ 0.31
SMARCD1-208ENST00000550280 CDK19Q9BWU1 502 aa16.98■□□□□ 0.31
SMARCD1-208ENST00000550280 PRDM11Q9NQV5 511 aa16.98■□□□□ 0.31
SMARCD1-208ENST00000550280 LRP5O75197 1615 aa16.98■□□□□ 0.31
SMARCD1-208ENST00000550280 SPATA31A1Q5TZJ5 1347 aa16.97■□□□□ 0.31
SMARCD1-208ENST00000550280 EN1Q05925 392 aaPredicted RBP16.97■□□□□ 0.31
SMARCD1-208ENST00000550280 NUTM2GQ5VZR2 741 aa16.97■□□□□ 0.31
SMARCD1-208ENST00000550280 DISP2A7MBM2 1401 aa16.96■□□□□ 0.31
SMARCD1-208ENST00000550280 ITSN1Q15811 1721 aa16.96■□□□□ 0.31
SMARCD1-208ENST00000550280 TNS1Q9HBL0 1735 aaKnown RBP16.96■□□□□ 0.31
SMARCD1-208ENST00000550280 BAG6P46379 1132 aa16.96■□□□□ 0.31
SMARCD1-208ENST00000550280 NBPF1Q3BBV0 1214 aa16.96■□□□□ 0.31
SMARCD1-208ENST00000550280 ACEP12821 1306 aa16.96■□□□□ 0.3
SMARCD1-208ENST00000550280 ZC3H6P61129 1189 aaKnown RBP16.95■□□□□ 0.3
SMARCD1-208ENST00000550280 NRKQ7Z2Y5 1582 aa16.94■□□□□ 0.3
SMARCD1-208ENST00000550280 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
SMARCD1-208ENST00000550280 PLEKHG3A1L390 1219 aa16.94■□□□□ 0.3
SMARCD1-208ENST00000550280 NBPF8Q3BBV2 869 aa16.94■□□□□ 0.3
SMARCD1-208ENST00000550280 CAMTA1Q9Y6Y1 1673 aa16.93■□□□□ 0.3
SMARCD1-208ENST00000550280 USP19O94966 1318 aa16.93■□□□□ 0.3
SMARCD1-208ENST00000550280 LMO7Q8WWI1 1683 aa16.92■□□□□ 0.3
SMARCD1-208ENST00000550280 STRN4Q9NRL3 753 aa16.92■□□□□ 0.3
SMARCD1-208ENST00000550280 CCDC61Q9Y6R9 512 aa16.92■□□□□ 0.3
SMARCD1-208ENST00000550280 SSH2Q76I76 1423 aa16.92■□□□□ 0.3
SMARCD1-208ENST00000550280 KIAA1210Q9ULL0 1709 aa16.92■□□□□ 0.3
SMARCD1-208ENST00000550280 EZH2Q15910 746 aaKnown RBP16.91■□□□□ 0.3
SMARCD1-208ENST00000550280 CAMKK2Q96RR4 588 aa16.9■□□□□ 0.3
SMARCD1-208ENST00000550280 R3HDM1Q15032 1099 aaKnown RBP16.89■□□□□ 0.29
SMARCD1-208ENST00000550280 LARP1Q6PKG0 1096 aaKnown RBP16.89■□□□□ 0.29
SMARCD1-208ENST00000550280 CPDO75976 1380 aa16.89■□□□□ 0.29
SMARCD1-208ENST00000550280 TRIM37O94972 964 aa16.88■□□□□ 0.29
SMARCD1-208ENST00000550280 USP35Q9P2H5 1018 aa16.88■□□□□ 0.29
SMARCD1-208ENST00000550280 BARGINQ6ZT62 677 aa16.87■□□□□ 0.29
SMARCD1-208ENST00000550280 PPIP5K1Q6PFW1 1433 aa16.87■□□□□ 0.29
SMARCD1-208ENST00000550280 ABTB2Q8N961 1025 aa16.86■□□□□ 0.29
SMARCD1-208ENST00000550280 CABP2Q9NPB3 220 aa16.86■□□□□ 0.29
SMARCD1-208ENST00000550280 FAM196AQ6ZSG2 479 aa16.85■□□□□ 0.29
SMARCD1-208ENST00000550280 GCP02774 474 aa16.84■□□□□ 0.29
SMARCD1-208ENST00000550280 CENPJQ9HC77 1338 aaPredicted RBP16.84■□□□□ 0.29
SMARCD1-208ENST00000550280 COL5A2P05997 1499 aaPredicted RBP16.84■□□□□ 0.29
SMARCD1-208ENST00000550280 RREB1Q92766 1687 aa16.83■□□□□ 0.28
SMARCD1-208ENST00000550280 SLIT3O75094 1523 aa16.82■□□□□ 0.28
SMARCD1-208ENST00000550280 USP6P35125 1406 aa16.82■□□□□ 0.28
SMARCD1-208ENST00000550280 APBA3O96018 575 aa16.82■□□□□ 0.28
SMARCD1-208ENST00000550280 SRPK2P78362 688 aaKnown RBP16.82■□□□□ 0.28
SMARCD1-208ENST00000550280 TCP11L2Q8N4U5 519 aa16.82■□□□□ 0.28
SMARCD1-208ENST00000550280 EVA1CP58658 441 aa16.81■□□□□ 0.28
SMARCD1-208ENST00000550280 CABP1Q9NZU7 370 aa16.81■□□□□ 0.28
SMARCD1-208ENST00000550280 QRICH2Q9H0J4 1663 aa16.81■□□□□ 0.28
SMARCD1-208ENST00000550280 NUP188Q5SRE5 1749 aa16.8■□□□□ 0.28
SMARCD1-208ENST00000550280 NLRP13Q86W25 1043 aa16.8■□□□□ 0.28
SMARCD1-208ENST00000550280 PARP4Q9UKK3 1724 aaKnown RBP16.79■□□□□ 0.28
SMARCD1-208ENST00000550280 PARD3Q8TEW0 1356 aa16.79■□□□□ 0.28
SMARCD1-208ENST00000550280 L3MBTL2Q969R5 705 aa16.79■□□□□ 0.28
SMARCD1-208ENST00000550280 PEAK1Q9H792 1746 aa16.79■□□□□ 0.28
SMARCD1-208ENST00000550280 PIK3C2AO00443 1686 aa16.78■□□□□ 0.28
SMARCD1-208ENST00000550280 PDE3BQ13370 1112 aa16.78■□□□□ 0.28
SMARCD1-208ENST00000550280 THRAP3Q9Y2W1 955 aaKnown RBP16.78■□□□□ 0.28
SMARCD1-208ENST00000550280 COL18A1P39060 1754 aa16.78■□□□□ 0.28
SMARCD1-208ENST00000550280 CRB1P82279 1406 aa16.78■□□□□ 0.28
SMARCD1-208ENST00000550280 BRD4O60885 1362 aaPredicted RBP16.77■□□□□ 0.28
SMARCD1-208ENST00000550280 AATKQ6ZMQ8 1374 aa16.77■□□□□ 0.28
SMARCD1-208ENST00000550280 AXIN2Q9Y2T1 843 aa16.77■□□□□ 0.28
SMARCD1-208ENST00000550280 NLRP6P59044 892 aa16.76■□□□□ 0.27
SMARCD1-208ENST00000550280 PTF1AQ7RTS3 328 aa16.76■□□□□ 0.27
SMARCD1-208ENST00000550280 LRRC37A3O60309 1634 aa16.76■□□□□ 0.27
SMARCD1-208ENST00000550280 TRPM1Q7Z4N2 1603 aa16.75■□□□□ 0.27
SMARCD1-208ENST00000550280 SIN3AQ96ST3 1273 aa16.75■□□□□ 0.27
SMARCD1-208ENST00000550280 ZBTB7CA1YPR0 619 aa16.73■□□□□ 0.27
SMARCD1-208ENST00000550280 CPSF1Q10570 1443 aaKnown RBP16.72■□□□□ 0.27
SMARCD1-208ENST00000550280 TTC21BQ7Z4L5 1316 aa16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 OVOS2A0A0G2JMS6 1433 aa16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 OVOS2A0A0J9YW53 1432 aa16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 OVOS2Q6IE36 1432 aa16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 ARHGEF25Q86VW2 580 aa16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 ANO8Q9HCE9 1232 aaPredicted RBP16.71■□□□□ 0.27
SMARCD1-208ENST00000550280 NFAT5O94916 1531 aa16.7■□□□□ 0.26
SMARCD1-208ENST00000550280 EVC2Q86UK5 1308 aa16.7■□□□□ 0.26
SMARCD1-208ENST00000550280 WDR17Q8IZU2 1322 aa16.7■□□□□ 0.26
SMARCD1-208ENST00000550280 SBF2Q86WG5 1849 aa16.69■□□□□ 0.26
SMARCD1-208ENST00000550280 WNK3Q9BYP7 1800 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms