RNA–Protein interactions for RNA: ENST00000550075.5

CPSF6-205, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 4

Gene CPSF6, Length 540 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-205ENST00000550075 AFF2P51816 1311 aa36.44■■■■□ 3.42
CPSF6-205ENST00000550075 USP6P35125 1406 aa36.43■■■■□ 3.42
CPSF6-205ENST00000550075 NGLY1Q96IV0 654 aa36.43■■■■□ 3.42
CPSF6-205ENST00000550075 ILDR2Q71H61 639 aa36.42■■■■□ 3.42
CPSF6-205ENST00000550075 AKAP12Q02952 1782 aa36.42■■■■□ 3.42
CPSF6-205ENST00000550075 TMF1P82094 1093 aa36.39■■■■□ 3.42
CPSF6-205ENST00000550075 PLEKHG5O94827 1062 aa36.38■■■■□ 3.41
CPSF6-205ENST00000550075 CABLES1Q8TDN4 633 aa36.38■■■■□ 3.41
CPSF6-205ENST00000550075 ZNF692Q9BU19 519 aaPredicted RBP36.38■■■■□ 3.41
CPSF6-205ENST00000550075 CRYBG1Q9Y4K1 1723 aa36.37■■■■□ 3.41
CPSF6-205ENST00000550075 POTEAQ6S8J7 498 aa36.36■■■■□ 3.41
CPSF6-205ENST00000550075 NINLQ9Y2I6 1382 aa36.36■■■■□ 3.41
CPSF6-205ENST00000550075 TMC1Q8TDI8 760 aa36.34■■■■□ 3.41
CPSF6-205ENST00000550075 MON2Q7Z3U7 1717 aa36.34■■■■□ 3.41
CPSF6-205ENST00000550075 PHRF1Q9P1Y6 1649 aaKnown RBP36.34■■■■□ 3.41
CPSF6-205ENST00000550075 CPSF1Q10570 1443 aaKnown RBP36.34■■■■□ 3.41
CPSF6-205ENST00000550075 CDCA8Q53HL2 280 aa36.33■■■■□ 3.41
CPSF6-205ENST00000550075 ABTB2Q8N961 1025 aa36.33■■■■□ 3.41
CPSF6-205ENST00000550075 KTN1Q86UP2 1357 aaKnown RBP36.31■■■■□ 3.4
CPSF6-205ENST00000550075 EIF4G2P78344 907 aaKnown RBP eCLIP36.31■■■■□ 3.4
CPSF6-205ENST00000550075 FNBP4Q8N3X1 1017 aaPredicted RBP36.31■■■■□ 3.4
CPSF6-205ENST00000550075 NRKQ7Z2Y5 1582 aa36.31■■■■□ 3.4
CPSF6-205ENST00000550075 SSH2Q76I76 1423 aa36.29■■■■□ 3.4
CPSF6-205ENST00000550075 HDGFL2Q7Z4V5 671 aaPredicted RBP36.29■■■■□ 3.4
CPSF6-205ENST00000550075 USP21Q9UK80 565 aa36.29■■■■□ 3.4
CPSF6-205ENST00000550075 TERF2IPQ9NYB0 399 aa36.28■■■■□ 3.4
CPSF6-205ENST00000550075 NUTM2GQ5VZR2 741 aa36.27■■■■□ 3.4
CPSF6-205ENST00000550075 NLRP13Q86W25 1043 aa36.27■■■■□ 3.4
CPSF6-205ENST00000550075 TNKS1BP1Q9C0C2 1729 aaKnown RBP36.27■■■■□ 3.4
CPSF6-205ENST00000550075 PLCH1Q4KWH8 1693 aa36.26■■■■□ 3.4
CPSF6-205ENST00000550075 TTC21AQ8NDW8 1320 aa36.26■■■■□ 3.39
CPSF6-205ENST00000550075 PIK3C2AO00443 1686 aa36.25■■■■□ 3.39
CPSF6-205ENST00000550075 NWD2Q9ULI1 1742 aa36.25■■■■□ 3.39
CPSF6-205ENST00000550075 CD163L1Q9NR16 1453 aa36.24■■■■□ 3.39
CPSF6-205ENST00000550075 SLIT2O94813 1529 aa36.24■■■■□ 3.39
CPSF6-205ENST00000550075 SLC12A5Q9H2X9 1139 aa36.24■■■■□ 3.39
CPSF6-205ENST00000550075 USP19O94966 1318 aa36.24■■■■□ 3.39
CPSF6-205ENST00000550075 TTC21BQ7Z4L5 1316 aa36.24■■■■□ 3.39
CPSF6-205ENST00000550075 COL14A1Q05707 1796 aaKnown RBP36.23■■■■□ 3.39
CPSF6-205ENST00000550075 QTRT2Q9H974 415 aaKnown RBP36.21■■■■□ 3.39
CPSF6-205ENST00000550075 TRPC5Q9UL62 973 aaPredicted RBP36.21■■■■□ 3.39
CPSF6-205ENST00000550075 BCL9LQ86UU0 1499 aa36.2■■■■□ 3.39
CPSF6-205ENST00000550075 EDC4Q6P2E9 1401 aaKnown RBP36.2■■■■□ 3.39
CPSF6-205ENST00000550075 A0A1W2PP64 1363 aa36.2■■■■□ 3.39
CPSF6-205ENST00000550075 RXRBP28702 533 aa36.2■■■■□ 3.39
CPSF6-205ENST00000550075 HSPA5P11021 654 aaKnown RBP36.19■■■■□ 3.38
CPSF6-205ENST00000550075 NLRP6P59044 892 aa36.19■■■■□ 3.38
CPSF6-205ENST00000550075 ATRNO75882 1429 aa36.18■■■■□ 3.38
CPSF6-205ENST00000550075 PRDM11Q9NQV5 511 aa36.18■■■■□ 3.38
CPSF6-205ENST00000550075 RBM6P78332 1123 aaKnown RBP36.16■■■■□ 3.38
CPSF6-205ENST00000550075 UNC5CLQ8IV45 518 aa36.16■■■■□ 3.38
CPSF6-205ENST00000550075 SLIT3O75094 1523 aa36.16■■■■□ 3.38
CPSF6-205ENST00000550075 CDK12Q9NYV4 1490 aaPredicted RBP36.16■■■■□ 3.38
CPSF6-205ENST00000550075 ANKRD36BQ8N2N9 1353 aa36.15■■■■□ 3.38
CPSF6-205ENST00000550075 KIAA0232Q92628 1395 aa36.14■■■■□ 3.38
CPSF6-205ENST00000550075 FAM83GA6ND36 823 aa36.13■■■■□ 3.37
CPSF6-205ENST00000550075 MYOM1P52179 1685 aa36.11■■■■□ 3.37
CPSF6-205ENST00000550075 SUGP2Q8IX01 1082 aaKnown RBP eCLIP36.11■■■■□ 3.37
CPSF6-205ENST00000550075 CPDO75976 1380 aa36.11■■■■□ 3.37
CPSF6-205ENST00000550075 USP54Q70EL1 1684 aa36.1■■■■□ 3.37
CPSF6-205ENST00000550075 SOCS7O14512 581 aa36.1■■■■□ 3.37
CPSF6-205ENST00000550075 GCP02774 474 aa36.1■■■■□ 3.37
CPSF6-205ENST00000550075 NRAPQ86VF7 1730 aa36.1■■■■□ 3.37
CPSF6-205ENST00000550075 ZC3H6P61129 1189 aaKnown RBP36.09■■■■□ 3.37
CPSF6-205ENST00000550075 BTG4Q9NY30 223 aa36.07■■■■□ 3.36
CPSF6-205ENST00000550075 USP31Q70CQ4 1352 aa36.06■■■■□ 3.36
CPSF6-205ENST00000550075 KCNH5Q8NCM2 988 aa36.06■■■■□ 3.36
CPSF6-205ENST00000550075 VPS72Q15906 364 aa36.03■■■■□ 3.36
CPSF6-205ENST00000550075 CHRNA2Q15822 529 aa36.02■■■■□ 3.36
CPSF6-205ENST00000550075 NME9Q86XW9 330 aa36.02■■■■□ 3.36
CPSF6-205ENST00000550075 GJD4Q96KN9 370 aaPredicted RBP36.02■■■■□ 3.36
CPSF6-205ENST00000550075 RGS12O14924 1447 aa36.01■■■■□ 3.36
CPSF6-205ENST00000550075 POLR3GLQ9BT43 218 aa36.01■■■■□ 3.36
CPSF6-205ENST00000550075 CCDC9Q9Y3X0 531 aaKnown RBP36■■■■□ 3.35
CPSF6-205ENST00000550075 LMO7Q8WWI1 1683 aa35.99■■■■□ 3.35
CPSF6-205ENST00000550075 GLI3P10071 1580 aa35.98■■■■□ 3.35
CPSF6-205ENST00000550075 NFAT5O94916 1531 aa35.98■■■■□ 3.35
CPSF6-205ENST00000550075 OVOS2A0A0J9YW53 1432 aa35.97■■■■□ 3.35
CPSF6-205ENST00000550075 OVOS2Q6IE36 1432 aa35.97■■■■□ 3.35
CPSF6-205ENST00000550075 ZBTB7CA1YPR0 619 aa35.96■■■■□ 3.35
CPSF6-205ENST00000550075 AATKQ6ZMQ8 1374 aa35.94■■■■□ 3.34
CPSF6-205ENST00000550075 SOX12O15370 315 aa35.94■■■■□ 3.34
CPSF6-205ENST00000550075 ZRANB1Q9UGI0 708 aa35.93■■■■□ 3.34
CPSF6-205ENST00000550075 KIF20BQ96Q89 1820 aa35.92■■■■□ 3.34
CPSF6-205ENST00000550075 CAMTA1Q9Y6Y1 1673 aa35.92■■■■□ 3.34
CPSF6-205ENST00000550075 ABCC6O95255 1503 aa35.91■■■■□ 3.34
CPSF6-205ENST00000550075 COG3Q96JB2 828 aa35.9■■■■□ 3.34
CPSF6-205ENST00000550075 STRN4Q9NRL3 753 aa35.9■■■■□ 3.34
CPSF6-205ENST00000550075 EVA1CP58658 441 aa35.89■■■■□ 3.34
CPSF6-205ENST00000550075 NSD3Q9BZ95 1437 aa35.89■■■■□ 3.34
CPSF6-205ENST00000550075 ARHGEF25Q86VW2 580 aa35.88■■■■□ 3.33
CPSF6-205ENST00000550075 COL18A1P39060 1754 aa35.87■■■■□ 3.33
CPSF6-205ENST00000550075 COL5A2P05997 1499 aaPredicted RBP35.86■■■■□ 3.33
CPSF6-205ENST00000550075 SPATA31A5Q5VU36 1347 aa35.86■■■■□ 3.33
CPSF6-205ENST00000550075 SPATA31A7Q8IWB4 1347 aa35.86■■■■□ 3.33
CPSF6-205ENST00000550075 LTN1O94822 1766 aa35.85■■■■□ 3.33
CPSF6-205ENST00000550075 FYB1O15117 783 aa35.8■■■■□ 3.32
CPSF6-205ENST00000550075 CARD14Q9BXL6 1004 aa35.8■■■■□ 3.32
CPSF6-205ENST00000550075 SPATA31A1Q5TZJ5 1347 aa35.8■■■■□ 3.32
CPSF6-205ENST00000550075 C11orf95C9JLR9 678 aaPredicted RBP35.79■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms