RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 RGS17Q9UGC6 210 aaPredicted RBP18.24■□□□□ 0.51
PRPF40B-210ENST00000549547 NGLY1Q96IV0 654 aa18.23■□□□□ 0.51
PRPF40B-210ENST00000549547 ZNF692Q9BU19 519 aaPredicted RBP18.23■□□□□ 0.51
PRPF40B-210ENST00000549547 USP6P35125 1406 aa18.23■□□□□ 0.51
PRPF40B-210ENST00000549547 AFF2P51816 1311 aa18.23■□□□□ 0.51
PRPF40B-210ENST00000549547 NINLQ9Y2I6 1382 aa18.22■□□□□ 0.51
PRPF40B-210ENST00000549547 TMF1P82094 1093 aa18.22■□□□□ 0.51
PRPF40B-210ENST00000549547 CRYBG1Q9Y4K1 1723 aa18.22■□□□□ 0.51
PRPF40B-210ENST00000549547 MON2Q7Z3U7 1717 aa18.21■□□□□ 0.51
PRPF40B-210ENST00000549547 CDCA8Q53HL2 280 aa18.21■□□□□ 0.51
PRPF40B-210ENST00000549547 PHRF1Q9P1Y6 1649 aaKnown RBP18.2■□□□□ 0.5
PRPF40B-210ENST00000549547 CPSF1Q10570 1443 aaKnown RBP18.19■□□□□ 0.5
PRPF40B-210ENST00000549547 ILDR2Q71H61 639 aa18.19■□□□□ 0.5
PRPF40B-210ENST00000549547 TMC1Q8TDI8 760 aa18.19■□□□□ 0.5
PRPF40B-210ENST00000549547 EIF4G2P78344 907 aaKnown RBP eCLIP18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 FNBP4Q8N3X1 1017 aaPredicted RBP18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 ABTB2Q8N961 1025 aa18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 CABLES1Q8TDN4 633 aa18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 NWD2Q9ULI1 1742 aa18.18■□□□□ 0.5
PRPF40B-210ENST00000549547 KTN1Q86UP2 1357 aaKnown RBP18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 NRKQ7Z2Y5 1582 aa18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 PLEKHG5O94827 1062 aa18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 POTEAQ6S8J7 498 aa18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 HDGFL2Q7Z4V5 671 aaPredicted RBP18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 TERF2IPQ9NYB0 399 aa18.17■□□□□ 0.5
PRPF40B-210ENST00000549547 SSH2Q76I76 1423 aa18.16■□□□□ 0.5
PRPF40B-210ENST00000549547 PLCH1Q4KWH8 1693 aa18.16■□□□□ 0.5
PRPF40B-210ENST00000549547 NLRP13Q86W25 1043 aa18.16■□□□□ 0.5
PRPF40B-210ENST00000549547 USP21Q9UK80 565 aa18.16■□□□□ 0.5
PRPF40B-210ENST00000549547 TTC21AQ8NDW8 1320 aa18.16■□□□□ 0.5
PRPF40B-210ENST00000549547 COL14A1Q05707 1796 aaKnown RBP18.15■□□□□ 0.5
PRPF40B-210ENST00000549547 PIK3C2AO00443 1686 aa18.15■□□□□ 0.5
PRPF40B-210ENST00000549547 CD163L1Q9NR16 1453 aa18.14■□□□□ 0.49
PRPF40B-210ENST00000549547 SLIT2O94813 1529 aa18.13■□□□□ 0.49
PRPF40B-210ENST00000549547 SLC12A5Q9H2X9 1139 aa18.13■□□□□ 0.49
PRPF40B-210ENST00000549547 TRPC5Q9UL62 973 aaPredicted RBP18.13■□□□□ 0.49
PRPF40B-210ENST00000549547 USP19O94966 1318 aa18.13■□□□□ 0.49
PRPF40B-210ENST00000549547 TTC21BQ7Z4L5 1316 aa18.13■□□□□ 0.49
PRPF40B-210ENST00000549547 RXRBP28702 533 aa18.12■□□□□ 0.49
PRPF40B-210ENST00000549547 NUTM2GQ5VZR2 741 aa18.12■□□□□ 0.49
PRPF40B-210ENST00000549547 QTRT2Q9H974 415 aaKnown RBP18.12■□□□□ 0.49
PRPF40B-210ENST00000549547 EDC4Q6P2E9 1401 aaKnown RBP18.12■□□□□ 0.49
PRPF40B-210ENST00000549547 NLRP6P59044 892 aa18.11■□□□□ 0.49
PRPF40B-210ENST00000549547 A0A1W2PP64 1363 aa18.11■□□□□ 0.49
PRPF40B-210ENST00000549547 BCL9LQ86UU0 1499 aa18.11■□□□□ 0.49
PRPF40B-210ENST00000549547 CDK12Q9NYV4 1490 aaPredicted RBP18.11■□□□□ 0.49
PRPF40B-210ENST00000549547 USP54Q70EL1 1684 aa18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 SLIT3O75094 1523 aa18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 ATRNO75882 1429 aa18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 HSPA5P11021 654 aaKnown RBP18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 RBM6P78332 1123 aaKnown RBP18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 UNC5CLQ8IV45 518 aa18.1■□□□□ 0.49
PRPF40B-210ENST00000549547 ANKRD36BQ8N2N9 1353 aa18.09■□□□□ 0.49
PRPF40B-210ENST00000549547 PRDM11Q9NQV5 511 aa18.09■□□□□ 0.49
PRPF40B-210ENST00000549547 NRAPQ86VF7 1730 aa18.08■□□□□ 0.48
PRPF40B-210ENST00000549547 MYOM1P52179 1685 aa18.08■□□□□ 0.48
PRPF40B-210ENST00000549547 CPDO75976 1380 aa18.07■□□□□ 0.48
PRPF40B-210ENST00000549547 KIAA0232Q92628 1395 aa18.07■□□□□ 0.48
PRPF40B-210ENST00000549547 FAM83GA6ND36 823 aa18.07■□□□□ 0.48
PRPF40B-210ENST00000549547 SOCS7O14512 581 aa18.07■□□□□ 0.48
PRPF40B-210ENST00000549547 GCP02774 474 aa18.07■□□□□ 0.48
PRPF40B-210ENST00000549547 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.06■□□□□ 0.48
PRPF40B-210ENST00000549547 KCNH5Q8NCM2 988 aa18.06■□□□□ 0.48
PRPF40B-210ENST00000549547 USP31Q70CQ4 1352 aa18.05■□□□□ 0.48
PRPF40B-210ENST00000549547 ZC3H6P61129 1189 aaKnown RBP18.05■□□□□ 0.48
PRPF40B-210ENST00000549547 BTG4Q9NY30 223 aa18.05■□□□□ 0.48
PRPF40B-210ENST00000549547 VPS72Q15906 364 aa18.04■□□□□ 0.48
PRPF40B-210ENST00000549547 GJD4Q96KN9 370 aaPredicted RBP18.03■□□□□ 0.48
PRPF40B-210ENST00000549547 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
PRPF40B-210ENST00000549547 KIF20BQ96Q89 1820 aa18.01■□□□□ 0.47
PRPF40B-210ENST00000549547 NME9Q86XW9 330 aa18.01■□□□□ 0.47
PRPF40B-210ENST00000549547 GLI3P10071 1580 aa18■□□□□ 0.47
PRPF40B-210ENST00000549547 RGS12O14924 1447 aa18■□□□□ 0.47
PRPF40B-210ENST00000549547 NFAT5O94916 1531 aa18■□□□□ 0.47
PRPF40B-210ENST00000549547 CHRNA2Q15822 529 aa18■□□□□ 0.47
PRPF40B-210ENST00000549547 POLR3GLQ9BT43 218 aa18■□□□□ 0.47
PRPF40B-210ENST00000549547 CCDC9Q9Y3X0 531 aaKnown RBP18■□□□□ 0.47
PRPF40B-210ENST00000549547 OVOS2A0A0J9YW53 1432 aa17.99■□□□□ 0.47
PRPF40B-210ENST00000549547 OVOS2Q6IE36 1432 aa17.99■□□□□ 0.47
PRPF40B-210ENST00000549547 ABCC6O95255 1503 aa17.99■□□□□ 0.47
PRPF40B-210ENST00000549547 AATKQ6ZMQ8 1374 aa17.99■□□□□ 0.47
PRPF40B-210ENST00000549547 LTN1O94822 1766 aa17.97■□□□□ 0.47
PRPF40B-210ENST00000549547 CAMTA1Q9Y6Y1 1673 aa17.97■□□□□ 0.47
PRPF40B-210ENST00000549547 ZBTB7CA1YPR0 619 aa17.97■□□□□ 0.47
PRPF40B-210ENST00000549547 EVA1CP58658 441 aa17.97■□□□□ 0.47
PRPF40B-210ENST00000549547 COG3Q96JB2 828 aa17.97■□□□□ 0.47
PRPF40B-210ENST00000549547 COL18A1P39060 1754 aa17.96■□□□□ 0.47
PRPF40B-210ENST00000549547 SOX12O15370 315 aa17.96■□□□□ 0.47
PRPF40B-210ENST00000549547 ZRANB1Q9UGI0 708 aa17.96■□□□□ 0.47
PRPF40B-210ENST00000549547 ARHGEF25Q86VW2 580 aa17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 STRN4Q9NRL3 753 aa17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 NSD3Q9BZ95 1437 aa17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 SPATA31A5Q5VU36 1347 aa17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 SPATA31A7Q8IWB4 1347 aa17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 COL5A2P05997 1499 aaPredicted RBP17.95■□□□□ 0.46
PRPF40B-210ENST00000549547 RGPD5Q99666 1765 aa17.93■□□□□ 0.46
PRPF40B-210ENST00000549547 FYB1O15117 783 aa17.92■□□□□ 0.46
PRPF40B-210ENST00000549547 CGNL1Q0VF96 1302 aa17.92■□□□□ 0.46
PRPF40B-210ENST00000549547 SPATA31A1Q5TZJ5 1347 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms