RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 GAS2L2Q8NHY3 880 aa20■□□□□ 0.79
CUX1-213ENST00000549414 DDX11L8A8MPP1 907 aa19.99■□□□□ 0.79
CUX1-213ENST00000549414 UBTFL1P0CB47 393 aaPredicted RBP19.99■□□□□ 0.79
CUX1-213ENST00000549414 MCM10Q7L590 875 aa19.99■□□□□ 0.79
CUX1-213ENST00000549414 DNMT1P26358 1616 aaKnown RBP19.99■□□□□ 0.79
CUX1-213ENST00000549414 DENND4BO75064 1496 aaPredicted RBP19.99■□□□□ 0.79
CUX1-213ENST00000549414 DUOX2Q9NRD8 1548 aa19.99■□□□□ 0.79
CUX1-213ENST00000549414 PER1O15534 1290 aaPredicted RBP19.98■□□□□ 0.79
CUX1-213ENST00000549414 PBRM1Q86U86 1689 aa19.98■□□□□ 0.79
CUX1-213ENST00000549414 INTS3Q68E01 1043 aaKnown RBP19.98■□□□□ 0.79
CUX1-213ENST00000549414 IFIT2P09913 472 aaKnown RBP19.98■□□□□ 0.79
CUX1-213ENST00000549414 PTMSP20962 102 aa19.98■□□□□ 0.79
CUX1-213ENST00000549414 PARD3Q8TEW0 1356 aa19.97■□□□□ 0.79
CUX1-213ENST00000549414 CDC45O75419 566 aa19.97■□□□□ 0.79
CUX1-213ENST00000549414 DRC7Q8IY82 874 aa19.96■□□□□ 0.79
CUX1-213ENST00000549414 NKTRP30414 1462 aaKnown RBP19.96■□□□□ 0.79
CUX1-213ENST00000549414 TEX14Q8IWB6 1497 aa19.96■□□□□ 0.79
CUX1-213ENST00000549414 SURF6O75683 361 aaKnown RBP19.96■□□□□ 0.79
CUX1-213ENST00000549414 GNL2Q13823 731 aaKnown RBP19.96■□□□□ 0.79
CUX1-213ENST00000549414 GPRASP1Q5JY77 1395 aa19.95■□□□□ 0.78
CUX1-213ENST00000549414 HDGFL1Q5TGJ6 251 aa19.95■□□□□ 0.78
CUX1-213ENST00000549414 CARD14Q9BXL6 1004 aa19.95■□□□□ 0.78
CUX1-213ENST00000549414 CCDC30Q5VVM6 783 aa19.95■□□□□ 0.78
CUX1-213ENST00000549414 CT47B1P0C2W7 299 aaPredicted RBP19.94■□□□□ 0.78
CUX1-213ENST00000549414 DDX58O95786 925 aaKnown RBP19.94■□□□□ 0.78
CUX1-213ENST00000549414 WASLO00401 505 aaPredicted RBP19.93■□□□□ 0.78
CUX1-213ENST00000549414 RIC3Q7Z5B4 369 aa19.93■□□□□ 0.78
CUX1-213ENST00000549414 G3BP1Q13283 466 aaKnown RBP eCLIP19.93■□□□□ 0.78
CUX1-213ENST00000549414 SYAP1Q96A49 352 aaPredicted RBP19.92■□□□□ 0.78
CUX1-213ENST00000549414 A2MP01023 1474 aa19.92■□□□□ 0.78
CUX1-213ENST00000549414 MEX3CQ5U5Q3 659 aaKnown RBP19.92■□□□□ 0.78
CUX1-213ENST00000549414 LRPPRCP42704 1394 aaKnown RBP19.91■□□□□ 0.78
CUX1-213ENST00000549414 GNAI3P08754 354 aa19.91■□□□□ 0.78
CUX1-213ENST00000549414 CHD1LQ86WJ1 897 aa19.91■□□□□ 0.78
CUX1-213ENST00000549414 GCC1Q96CN9 775 aa19.91■□□□□ 0.78
CUX1-213ENST00000549414 TARBP1Q13395 1621 aaKnown RBP19.91■□□□□ 0.78
CUX1-213ENST00000549414 WDR7Q9Y4E6 1490 aa19.91■□□□□ 0.78
CUX1-213ENST00000549414 ZNF530Q6P9A1 599 aaPredicted RBP19.9■□□□□ 0.78
CUX1-213ENST00000549414 SHANK2Q9UPX8 1470 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 NINLQ9Y2I6 1382 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 IGHDP01880 384 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 TRIM27P14373 513 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 TOMM22Q9NS69 142 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 FYB1O15117 783 aa19.9■□□□□ 0.78
CUX1-213ENST00000549414 KDM6BO15054 1643 aa19.89■□□□□ 0.78
CUX1-213ENST00000549414 FAM83GA6ND36 823 aa19.89■□□□□ 0.78
CUX1-213ENST00000549414 CDK11BP21127 795 aaKnown RBP19.89■□□□□ 0.77
CUX1-213ENST00000549414 TMX4Q9H1E5 349 aaPredicted RBP19.89■□□□□ 0.77
CUX1-213ENST00000549414 USHBP1Q8N6Y0 703 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 CEP170Q5SW79 1584 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 GNAI2P04899 355 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 AMOTL2Q9Y2J4 779 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 STRN4Q9NRL3 753 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 PLEKHH1Q9ULM0 1364 aa19.88■□□□□ 0.77
CUX1-213ENST00000549414 TNNQ9UQP3 1299 aa19.87■□□□□ 0.77
CUX1-213ENST00000549414 PLEKHO1Q53GL0 409 aaPredicted RBP19.87■□□□□ 0.77
CUX1-213ENST00000549414 RUFY2Q8WXA3 655 aa19.87■□□□□ 0.77
CUX1-213ENST00000549414 G3V3G9 751 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 ZKSCAN1P17029 563 aaPredicted RBP19.86■□□□□ 0.77
CUX1-213ENST00000549414 DCAF8Q5TAQ9 597 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 MCTP1Q6DN14 999 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 ZC3H6P61129 1189 aaKnown RBP19.86■□□□□ 0.77
CUX1-213ENST00000549414 ANKLE2Q86XL3 938 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 SPINK5Q9NQ38 1064 aaPredicted RBP19.86■□□□□ 0.77
CUX1-213ENST00000549414 ZRANB1Q9UGI0 708 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 ADGRL2O95490 1459 aa19.86■□□□□ 0.77
CUX1-213ENST00000549414 NEK4P51957 841 aa19.85■□□□□ 0.77
CUX1-213ENST00000549414 ASXL1Q8IXJ9 1541 aa19.85■□□□□ 0.77
CUX1-213ENST00000549414 ARID3AQ99856 593 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 NEUROD6Q96NK8 337 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 F6X3S4 739 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 EXOC6BQ9Y2D4 811 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 ARHGEF12Q9NZN5 1544 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 IL1RAPL2Q9NP60 686 aa19.84■□□□□ 0.77
CUX1-213ENST00000549414 NUTM2BA6NNL0 878 aaPredicted RBP19.83■□□□□ 0.77
CUX1-213ENST00000549414 NUTM2EB1AL46 878 aaPredicted RBP19.83■□□□□ 0.77
CUX1-213ENST00000549414 NUTM2AQ8IVF1 878 aaPredicted RBP19.83■□□□□ 0.77
CUX1-213ENST00000549414 CLASRPQ8N2M8 674 aaKnown RBP19.83■□□□□ 0.77
CUX1-213ENST00000549414 MAP4K4O95819 1239 aaPredicted RBP19.83■□□□□ 0.77
CUX1-213ENST00000549414 HSP90AB4PQ58FF6 505 aa19.82■□□□□ 0.76
CUX1-213ENST00000549414 ZNF518AQ6AHZ1 1483 aa19.82■□□□□ 0.76
CUX1-213ENST00000549414 ABCC2Q92887 1545 aa19.82■□□□□ 0.76
CUX1-213ENST00000549414 VPS37CA5D8V6 355 aaPredicted RBP19.82■□□□□ 0.76
CUX1-213ENST00000549414 SKOR2Q2VWA4 1001 aaPredicted RBP19.82■□□□□ 0.76
CUX1-213ENST00000549414 SMARCA5O60264 1052 aaPredicted RBP19.82■□□□□ 0.76
CUX1-213ENST00000549414 KIAA2012Q0VF49 1180 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 CCT4P50991 539 aaKnown RBP19.81■□□□□ 0.76
CUX1-213ENST00000549414 UHRF1BP1Q6BDS2 1440 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 PCDHB15Q9Y5E8 787 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 H3BQV1 296 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 PIP4K2BP78356 416 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 IFFO2Q5TF58 517 aa19.81■□□□□ 0.76
CUX1-213ENST00000549414 GOLGA6L6A8MZA4 724 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 SRCIN1Q9C0H9 1055 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 FOXO3O43524 673 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 HTATSF1O43719 755 aaKnown RBP19.8■□□□□ 0.76
CUX1-213ENST00000549414 FAM184AQ8NB25 1140 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 NCKAP5LQ9HCH0 1330 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 ERC2O15083 957 aa19.8■□□□□ 0.76
CUX1-213ENST00000549414 IFT57Q9NWB7 429 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms