RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 ANKRD50Q9ULJ7 1429 aa10.61□□□□□ -0.71
DEPDC4-208ENST00000549341 PTCH1Q13635 1447 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 DEFB132Q7Z7B7 95 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 L3MBTL3Q96JM7 780 aaPredicted RBP10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 PCDHB8Q9UN66 801 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 METP08581 1390 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 C1orf167Q5SNV9 1468 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 UNC13BO14795 1591 aa10.59□□□□□ -0.71
DEPDC4-208ENST00000549341 XRN1Q8IZH2 1706 aaKnown RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 FAM50AQ14320 339 aaKnown RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 C3orf67Q6ZVT6 689 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 CCDC125Q86Z20 511 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 FNBP4Q8N3X1 1017 aaPredicted RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 MARVELD3Q96A59 401 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 MYO5BQ9ULV0 1848 aa10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 BLMP54132 1417 aaPredicted RBP10.58□□□□□ -0.72
DEPDC4-208ENST00000549341 ADGRL2O95490 1459 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 GOLGA2Q08379 1002 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 ZNF326Q5BKZ1 582 aaKnown RBP10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 FBXO3Q9UK99 471 aa10.57□□□□□ -0.72
DEPDC4-208ENST00000549341 PSDA5PKW4 1024 aaPredicted RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 MKRN3Q13064 507 aaKnown RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 SF3B2Q13435 895 aaKnown RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 ZNF467Q7Z7K2 595 aaPredicted RBP10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 ORAI2Q96SN7 254 aa10.56□□□□□ -0.72
DEPDC4-208ENST00000549341 XPCQ01831 940 aaPredicted RBP10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 SOS2Q07890 1332 aaPredicted RBP10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 MYOM2P54296 1465 aa10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 BCL9LQ86UU0 1499 aa10.55□□□□□ -0.72
DEPDC4-208ENST00000549341 FKBP8Q14318 412 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 GSE1Q14687 1217 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 GJD4Q96KN9 370 aaPredicted RBP10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 NRXN3Q9Y4C0 1643 aa10.54□□□□□ -0.72
DEPDC4-208ENST00000549341 NALCNQ8IZF0 1738 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 EMP3P54852 163 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 PDCD7Q8N8D1 485 aaKnown RBP10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 RALGAPBQ86X10 1494 aa10.53□□□□□ -0.72
DEPDC4-208ENST00000549341 LRP5O75197 1615 aa10.52□□□□□ -0.73
DEPDC4-208ENST00000549341 A0A0G2JS52 829 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 MYT1Q01538 1121 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 ROBO2Q9HCK4 1378 aa10.51□□□□□ -0.73
DEPDC4-208ENST00000549341 E9PCH4 1651 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 ZEB1P37275 1124 aaPredicted RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 ESCO1Q5FWF5 840 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 CCDC9Q9Y3X0 531 aaKnown RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 NPHP3Q7Z494 1330 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 NUP155O75694 1391 aa10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 RRBP1Q9P2E9 1410 aaKnown RBP10.5□□□□□ -0.73
DEPDC4-208ENST00000549341 HRCP23327 699 aa10.49□□□□□ -0.73
DEPDC4-208ENST00000549341 SEPT12Q8IYM1 358 aa10.49□□□□□ -0.73
DEPDC4-208ENST00000549341 GLI3P10071 1580 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 COL22A1Q8NFW1 1626 aaPredicted RBP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 CHRM1P11229 460 aaPredicted RBP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 UNC5CLQ8IV45 518 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 PXDNQ92626 1479 aa10.48□□□□□ -0.73
DEPDC4-208ENST00000549341 LAMC1P11047 1609 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 NUTM2FA1L443 756 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 FOXO3O43524 673 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 BAG6P46379 1132 aa10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 HAP1P54257 671 aaPredicted RBP10.47□□□□□ -0.73
DEPDC4-208ENST00000549341 R3HDM1Q15032 1099 aaKnown RBP10.46□□□□□ -0.73
DEPDC4-208ENST00000549341 IQGAP3Q86VI3 1631 aa10.46□□□□□ -0.74
DEPDC4-208ENST00000549341 SLIT2O94813 1529 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 NEXMIFQ5QGS0 1516 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 YY1P25490 414 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 KRT27Q7Z3Y8 459 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 KLHL34Q8N239 644 aa10.45□□□□□ -0.74
DEPDC4-208ENST00000549341 HS3ST6Q96QI5 342 aa10.44□□□□□ -0.74
DEPDC4-208ENST00000549341 HFM1A2PYH4 1435 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 LRPPRCP42704 1394 aaKnown RBP10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM205CA6NFA0 338 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 ITGAEP38570 1179 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 PSEN1P49768 467 aa10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 EN1Q05925 392 aaPredicted RBP10.43□□□□□ -0.74
DEPDC4-208ENST00000549341 VPS72Q15906 364 aa10.42□□□□□ -0.74
DEPDC4-208ENST00000549341 CDC42BPGQ6DT37 1551 aa10.42□□□□□ -0.74
DEPDC4-208ENST00000549341 USP32Q8NFA0 1604 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CCER1Q8TC90 406 aaPredicted RBP10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CABLES1Q8TDN4 633 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 NAIPQ13075 1403 aa10.41□□□□□ -0.74
DEPDC4-208ENST00000549341 CLTCL1P53675 1640 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 ROCK1Q13464 1354 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 SPATA31A3Q5VYP0 1347 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 G3V3G9 751 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM98CQ17RN3 349 aaKnown RBP10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 FAM182BQ5T319 152 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 LMOD2Q6P5Q4 547 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 KRTAP3-3Q9BYR6 98 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 KRTAP3-2Q9BYR7 98 aa10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.4□□□□□ -0.74
DEPDC4-208ENST00000549341 CCDC144AA2RUR9 1427 aa10.4□□□□□ -0.75
DEPDC4-208ENST00000549341 SPHKAPQ2M3C7 1700 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 STK26Q9P289 416 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 PRAG1Q86YV5 1406 aa10.39□□□□□ -0.75
DEPDC4-208ENST00000549341 PDAP1Q13442 181 aaKnown RBP10.38□□□□□ -0.75
DEPDC4-208ENST00000549341 TNS3Q68CZ2 1445 aa10.38□□□□□ -0.75
DEPDC4-208ENST00000549341 VGFO15240 615 aaPredicted RBP10.37□□□□□ -0.75
DEPDC4-208ENST00000549341 ACIN1Q9UKV3 1341 aaKnown RBP10.36□□□□□ -0.75
DEPDC4-208ENST00000549341 MARF1Q9Y4F3 1742 aaKnown RBP10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms