RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 PANK3Q9H999 370 aa13.37□□□□□ -0.27
SMARCD1-206ENST00000549274 NRKQ7Z2Y5 1582 aa13.37□□□□□ -0.27
SMARCD1-206ENST00000549274 KIF20BQ96Q89 1820 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 CD163L1Q9NR16 1453 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 ARHGEF10O15013 1369 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 NPC1L1Q9UHC9 1359 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 FOXO3O43524 673 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 SCAF1Q9H7N4 1312 aaKnown RBP13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 PHLPP1O60346 1717 aa13.36□□□□□ -0.27
SMARCD1-206ENST00000549274 DDX10Q13206 875 aaKnown RBP13.35□□□□□ -0.27
SMARCD1-206ENST00000549274 KRT28Q7Z3Y7 464 aa13.35□□□□□ -0.27
SMARCD1-206ENST00000549274 NSD3Q9BZ95 1437 aa13.35□□□□□ -0.27
SMARCD1-206ENST00000549274 SOS2Q07890 1332 aaPredicted RBP13.35□□□□□ -0.27
SMARCD1-206ENST00000549274 TRPM3Q9HCF6 1732 aaPredicted RBP13.34□□□□□ -0.27
SMARCD1-206ENST00000549274 PIP4K2BP78356 416 aa13.34□□□□□ -0.27
SMARCD1-206ENST00000549274 PXDNQ92626 1479 aa13.34□□□□□ -0.27
SMARCD1-206ENST00000549274 ANKRD26Q9UPS8 1709 aa13.33□□□□□ -0.27
SMARCD1-206ENST00000549274 TNS3Q68CZ2 1445 aa13.33□□□□□ -0.28
SMARCD1-206ENST00000549274 SSH2Q76I76 1423 aa13.33□□□□□ -0.28
SMARCD1-206ENST00000549274 LRRC59Q96AG4 307 aaKnown RBP13.33□□□□□ -0.28
SMARCD1-206ENST00000549274 USP54Q70EL1 1684 aa13.33□□□□□ -0.28
SMARCD1-206ENST00000549274 TTC21BQ7Z4L5 1316 aa13.33□□□□□ -0.28
SMARCD1-206ENST00000549274 PAK3O75914 559 aaPredicted RBP13.32□□□□□ -0.28
SMARCD1-206ENST00000549274 ALS2Q96Q42 1657 aa13.31□□□□□ -0.28
SMARCD1-206ENST00000549274 NLRP13Q86W25 1043 aa13.31□□□□□ -0.28
SMARCD1-206ENST00000549274 PER1O15534 1290 aaPredicted RBP13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 ABTB2Q8N961 1025 aa13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 FBXO41Q8TF61 875 aa13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 COG3Q96JB2 828 aa13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 SPATA31A3Q5VYP0 1347 aa13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 USP31Q70CQ4 1352 aa13.3□□□□□ -0.28
SMARCD1-206ENST00000549274 MED1Q15648 1581 aaPredicted RBP13.29□□□□□ -0.28
SMARCD1-206ENST00000549274 COL16A1Q07092 1604 aaPredicted RBP13.29□□□□□ -0.28
SMARCD1-206ENST00000549274 PIK3C2AO00443 1686 aa13.29□□□□□ -0.28
SMARCD1-206ENST00000549274 CARD14Q9BXL6 1004 aa13.29□□□□□ -0.28
SMARCD1-206ENST00000549274 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.28□□□□□ -0.28
SMARCD1-206ENST00000549274 KCNH5Q8NCM2 988 aa13.28□□□□□ -0.28
SMARCD1-206ENST00000549274 SHPRHQ149N8 1683 aa13.28□□□□□ -0.28
SMARCD1-206ENST00000549274 ANP32CO43423 234 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 NLRP6P59044 892 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 RALBP1Q15311 655 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 JCADQ9P266 1359 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 OVOS2A0A0J9YW53 1432 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 OVOS2Q6IE36 1432 aa13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 COL22A1Q8NFW1 1626 aaPredicted RBP13.27□□□□□ -0.29
SMARCD1-206ENST00000549274 FYB1O15117 783 aa13.26□□□□□ -0.29
SMARCD1-206ENST00000549274 LMOD2Q6P5Q4 547 aa13.26□□□□□ -0.29
SMARCD1-206ENST00000549274 PPP4R3CPQ6ZMV5 832 aa13.26□□□□□ -0.29
SMARCD1-206ENST00000549274 XPCQ01831 940 aaPredicted RBP13.25□□□□□ -0.29
SMARCD1-206ENST00000549274 MORC1Q86VD1 984 aa13.25□□□□□ -0.29
SMARCD1-206ENST00000549274 USP19O94966 1318 aa13.24□□□□□ -0.29
SMARCD1-206ENST00000549274 NCBP3Q53F19 620 aaKnown RBP13.24□□□□□ -0.29
SMARCD1-206ENST00000549274 SLIT3O75094 1523 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 KIF24Q5T7B8 1368 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 AATKQ6ZMQ8 1374 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 SPATA31A6Q5VVP1 1343 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 HAP1P54257 671 aaPredicted RBP13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 DIEXFQ68CQ4 756 aaKnown RBP13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 NME9Q86XW9 330 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 DDX17Q92841 729 aaKnown RBP13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 PHRF1Q9P1Y6 1649 aaKnown RBP13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 ABCC6O95255 1503 aa13.23□□□□□ -0.29
SMARCD1-206ENST00000549274 PNPLA6Q8IY17 1366 aa13.22□□□□□ -0.29
SMARCD1-206ENST00000549274 GGNBP2Q9H3C7 697 aa13.22□□□□□ -0.29
SMARCD1-206ENST00000549274 PARD3Q8TEW0 1356 aa13.21□□□□□ -0.29
SMARCD1-206ENST00000549274 CC2D1BQ5T0F9 858 aaKnown RBP13.21□□□□□ -0.29
SMARCD1-206ENST00000549274 ABCA3Q99758 1704 aa13.21□□□□□ -0.3
SMARCD1-206ENST00000549274 MARF1Q9Y4F3 1742 aaKnown RBP13.21□□□□□ -0.3
SMARCD1-206ENST00000549274 CRYBG1Q9Y4K1 1723 aa13.21□□□□□ -0.3
SMARCD1-206ENST00000549274 MAP2P11137 1827 aaKnown RBP13.2□□□□□ -0.3
SMARCD1-206ENST00000549274 RTL1A6NKG5 1358 aa13.2□□□□□ -0.3
SMARCD1-206ENST00000549274 MYBBP1AQ9BQG0 1328 aaKnown RBP13.19□□□□□ -0.3
SMARCD1-206ENST00000549274 GCP02774 474 aa13.19□□□□□ -0.3
SMARCD1-206ENST00000549274 HSPA1LP34931 641 aa13.19□□□□□ -0.3
SMARCD1-206ENST00000549274 PRKRIP1Q9H875 184 aaPredicted RBP13.19□□□□□ -0.3
SMARCD1-206ENST00000549274 CPDO75976 1380 aa13.19□□□□□ -0.3
SMARCD1-206ENST00000549274 ZBTB22O15209 634 aa13.18□□□□□ -0.3
SMARCD1-206ENST00000549274 NFAT5O94916 1531 aa13.18□□□□□ -0.3
SMARCD1-206ENST00000549274 LTN1O94822 1766 aa13.17□□□□□ -0.3
SMARCD1-206ENST00000549274 CFAP53Q96M91 514 aa13.17□□□□□ -0.3
SMARCD1-206ENST00000549274 SMG6Q86US8 1419 aaKnown RBP13.16□□□□□ -0.3
SMARCD1-206ENST00000549274 NUTM2GQ5VZR2 741 aa13.16□□□□□ -0.3
SMARCD1-206ENST00000549274 BLMP54132 1417 aaPredicted RBP13.15□□□□□ -0.3
SMARCD1-206ENST00000549274 COL14A1Q05707 1796 aaKnown RBP13.15□□□□□ -0.3
SMARCD1-206ENST00000549274 FLT4P35916 1363 aa13.15□□□□□ -0.3
SMARCD1-206ENST00000549274 CDK12Q9NYV4 1490 aaPredicted RBP13.15□□□□□ -0.3
SMARCD1-206ENST00000549274 AMPHP49418 695 aa13.14□□□□□ -0.31
SMARCD1-206ENST00000549274 ZRANB1Q9UGI0 708 aa13.14□□□□□ -0.31
SMARCD1-206ENST00000549274 FAM208AQ9UK61 1670 aaKnown RBP13.13□□□□□ -0.31
SMARCD1-206ENST00000549274 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
SMARCD1-206ENST00000549274 ARHGEF25Q86VW2 580 aa13.13□□□□□ -0.31
SMARCD1-206ENST00000549274 PRDM11Q9NQV5 511 aa13.13□□□□□ -0.31
SMARCD1-206ENST00000549274 NWD2Q9ULI1 1742 aa13.13□□□□□ -0.31
SMARCD1-206ENST00000549274 INSRP06213 1382 aa13.12□□□□□ -0.31
SMARCD1-206ENST00000549274 CCER2I3L3R5 266 aa13.12□□□□□ -0.31
SMARCD1-206ENST00000549274 TNNT2P45379 298 aaPredicted RBP13.12□□□□□ -0.31
SMARCD1-206ENST00000549274 MAP3K19Q56UN5 1328 aa13.12□□□□□ -0.31
SMARCD1-206ENST00000549274 KIAA0232Q92628 1395 aa13.11□□□□□ -0.31
SMARCD1-206ENST00000549274 SOX12O15370 315 aa13.11□□□□□ -0.31
SMARCD1-206ENST00000549274 CNGB1Q14028 1251 aaPredicted RBP13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 250.6 ms