RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 NLRP6P59044 892 aa10.24□□□□□ -0.77
LIMA1-204ENST00000549064 TRPC5Q9UL62 973 aaPredicted RBP10.24□□□□□ -0.77
LIMA1-204ENST00000549064 RPRD2Q5VT52 1461 aaKnown RBP10.23□□□□□ -0.77
LIMA1-204ENST00000549064 NRXN3Q9Y4C0 1643 aa10.23□□□□□ -0.77
LIMA1-204ENST00000549064 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIMA1-204ENST00000549064 MARF1Q9Y4F3 1742 aaKnown RBP10.21□□□□□ -0.77
LIMA1-204ENST00000549064 BRWD3Q6RI45 1802 aa10.21□□□□□ -0.77
LIMA1-204ENST00000549064 TESPA1A2RU30 521 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-204ENST00000549064 MAP3K13O43283 966 aa10.21□□□□□ -0.77
LIMA1-204ENST00000549064 DEFB132Q7Z7B7 95 aa10.21□□□□□ -0.77
LIMA1-204ENST00000549064 CCDC125Q86Z20 511 aa10.21□□□□□ -0.77
LIMA1-204ENST00000549064 ANKRD30AQ9BXX3 1397 aa10.21□□□□□ -0.78
LIMA1-204ENST00000549064 LAMC1P11047 1609 aa10.21□□□□□ -0.78
LIMA1-204ENST00000549064 E9PCH4 1651 aa10.21□□□□□ -0.78
LIMA1-204ENST00000549064 SOX12O15370 315 aa10.2□□□□□ -0.78
LIMA1-204ENST00000549064 FNBP4Q8N3X1 1017 aaPredicted RBP10.2□□□□□ -0.78
LIMA1-204ENST00000549064 ADGRL3Q9HAR2 1447 aa10.2□□□□□ -0.78
LIMA1-204ENST00000549064 SLC24A3Q9HC58 644 aa10.2□□□□□ -0.78
LIMA1-204ENST00000549064 COL22A1Q8NFW1 1626 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-204ENST00000549064 BCL9LQ86UU0 1499 aa10.19□□□□□ -0.78
LIMA1-204ENST00000549064 PTCH1Q13635 1447 aa10.19□□□□□ -0.78
LIMA1-204ENST00000549064 VPS8Q8N3P4 1428 aa10.19□□□□□ -0.78
LIMA1-204ENST00000549064 NEUROD2Q15784 382 aa10.19□□□□□ -0.78
LIMA1-204ENST00000549064 C1orf167Q5SNV9 1468 aa10.18□□□□□ -0.78
LIMA1-204ENST00000549064 BLMP54132 1417 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-204ENST00000549064 PAK3O75914 559 aaPredicted RBP10.18□□□□□ -0.78
LIMA1-204ENST00000549064 GLI3P10071 1580 aa10.18□□□□□ -0.78
LIMA1-204ENST00000549064 METP08581 1390 aa10.17□□□□□ -0.78
LIMA1-204ENST00000549064 SOS2Q07890 1332 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-204ENST00000549064 PSDA5PKW4 1024 aaPredicted RBP10.17□□□□□ -0.78
LIMA1-204ENST00000549064 KIF12Q96FN5 646 aa10.17□□□□□ -0.78
LIMA1-204ENST00000549064 ORAI2Q96SN7 254 aa10.17□□□□□ -0.78
LIMA1-204ENST00000549064 LARP6Q9BRS8 491 aaKnown RBP10.16□□□□□ -0.78
LIMA1-204ENST00000549064 ADGRL2O95490 1459 aa10.16□□□□□ -0.78
LIMA1-204ENST00000549064 MYOM2P54296 1465 aa10.16□□□□□ -0.78
LIMA1-204ENST00000549064 TNKS1BP1Q9C0C2 1729 aaKnown RBP10.16□□□□□ -0.78
LIMA1-204ENST00000549064 GJD4Q96KN9 370 aaPredicted RBP10.15□□□□□ -0.78
LIMA1-204ENST00000549064 ANKRD50Q9ULJ7 1429 aa10.15□□□□□ -0.79
LIMA1-204ENST00000549064 SPHKAPQ2M3C7 1700 aa10.14□□□□□ -0.79
LIMA1-204ENST00000549064 RALGAPBQ86X10 1494 aa10.14□□□□□ -0.79
LIMA1-204ENST00000549064 IQGAP3Q86VI3 1631 aa10.14□□□□□ -0.79
LIMA1-204ENST00000549064 HRCP23327 699 aa10.13□□□□□ -0.79
LIMA1-204ENST00000549064 MS4A4AQ96JQ5 239 aa10.13□□□□□ -0.79
LIMA1-204ENST00000549064 ARXQ96QS3 562 aa10.13□□□□□ -0.79
LIMA1-204ENST00000549064 SF3B2Q13435 895 aaKnown RBP10.12□□□□□ -0.79
LIMA1-204ENST00000549064 PDE4AP27815 886 aa10.11□□□□□ -0.79
LIMA1-204ENST00000549064 FXR2P51116 673 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMA1-204ENST00000549064 XPCQ01831 940 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-204ENST00000549064 PXDNQ92626 1479 aa10.1□□□□□ -0.79
LIMA1-204ENST00000549064 SLIT2O94813 1529 aa10.09□□□□□ -0.79
LIMA1-204ENST00000549064 MFSD10Q14728 455 aa10.09□□□□□ -0.79
LIMA1-204ENST00000549064 UNC5CLQ8IV45 518 aa10.09□□□□□ -0.79
LIMA1-204ENST00000549064 SEPT12Q8IYM1 358 aa10.09□□□□□ -0.79
LIMA1-204ENST00000549064 ROBO2Q9HCK4 1378 aa10.09□□□□□ -0.79
LIMA1-204ENST00000549064 NEXMIFQ5QGS0 1516 aa10.08□□□□□ -0.8
LIMA1-204ENST00000549064 ZMYND10O75800 440 aa10.08□□□□□ -0.8
LIMA1-204ENST00000549064 ZNF326Q5BKZ1 582 aaKnown RBP10.08□□□□□ -0.8
LIMA1-204ENST00000549064 CRISPLD2Q9H0B8 497 aa10.08□□□□□ -0.8
LIMA1-204ENST00000549064 PLCH1Q4KWH8 1693 aa10.07□□□□□ -0.8
LIMA1-204ENST00000549064 YY1P25490 414 aa10.07□□□□□ -0.8
LIMA1-204ENST00000549064 SMYD5Q6GMV2 418 aa10.07□□□□□ -0.8
LIMA1-204ENST00000549064 DDX27Q96GQ7 796 aaKnown RBP10.07□□□□□ -0.8
LIMA1-204ENST00000549064 USP32Q8NFA0 1604 aa10.07□□□□□ -0.8
LIMA1-204ENST00000549064 NPHP3Q7Z494 1330 aa10.07□□□□□ -0.8
LIMA1-204ENST00000549064 FOXO3O43524 673 aa10.06□□□□□ -0.8
LIMA1-204ENST00000549064 BAG6P46379 1132 aa10.06□□□□□ -0.8
LIMA1-204ENST00000549064 FAM50AQ14320 339 aaKnown RBP10.06□□□□□ -0.8
LIMA1-204ENST00000549064 R3HDM1Q15032 1099 aaKnown RBP10.06□□□□□ -0.8
LIMA1-204ENST00000549064 ESCO1Q5FWF5 840 aa10.06□□□□□ -0.8
LIMA1-204ENST00000549064 CLTCL1P53675 1640 aa10.05□□□□□ -0.8
LIMA1-204ENST00000549064 EN1Q05925 392 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-204ENST00000549064 KRT27Q7Z3Y8 459 aa10.05□□□□□ -0.8
LIMA1-204ENST00000549064 PHF12Q96QT6 1004 aa10.05□□□□□ -0.8
LIMA1-204ENST00000549064 RGPD1P0DJD0 1748 aa10.04□□□□□ -0.8
LIMA1-204ENST00000549064 CDC42BPGQ6DT37 1551 aa10.04□□□□□ -0.8
LIMA1-204ENST00000549064 NUP155O75694 1391 aa10.03□□□□□ -0.8
LIMA1-204ENST00000549064 NUTM2FA1L443 756 aa10.03□□□□□ -0.8
LIMA1-204ENST00000549064 ABCA3Q99758 1704 aa10.03□□□□□ -0.8
LIMA1-204ENST00000549064 TNS1Q9HBL0 1735 aaKnown RBP10.03□□□□□ -0.8
LIMA1-204ENST00000549064 NWD2Q9ULI1 1742 aa10.03□□□□□ -0.8
LIMA1-204ENST00000549064 CCDC9Q9Y3X0 531 aaKnown RBP10.03□□□□□ -0.8
LIMA1-204ENST00000549064 ARIH1Q9Y4X5 557 aaPredicted RBP10.03□□□□□ -0.8
LIMA1-204ENST00000549064 KIF1BO60333 1816 aa10.03□□□□□ -0.8
LIMA1-204ENST00000549064 LOC105371045A0A1W2PR82 267 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 GOLGA2Q08379 1002 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 CAMK2BQ13554 666 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 VPS72Q15906 364 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 FAM182BQ5T319 152 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 BARGINQ6ZT62 677 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 TMEM106CQ9BVX2 250 aa10.02□□□□□ -0.81
LIMA1-204ENST00000549064 A0A0G2JS52 829 aa10.01□□□□□ -0.81
LIMA1-204ENST00000549064 ONECUT3O60422 494 aaPredicted RBP10.01□□□□□ -0.81
LIMA1-204ENST00000549064 MYT1Q01538 1121 aa10.01□□□□□ -0.81
LIMA1-204ENST00000549064 PIP4P2Q8N4L2 257 aa10.01□□□□□ -0.81
LIMA1-204ENST00000549064 CABLES1Q8TDN4 633 aa10.01□□□□□ -0.81
LIMA1-204ENST00000549064 NRAPQ86VF7 1730 aa10.01□□□□□ -0.81
LIMA1-204ENST00000549064 HFM1A2PYH4 1435 aa10□□□□□ -0.81
LIMA1-204ENST00000549064 MLLT3P42568 568 aaPredicted RBP10□□□□□ -0.81
LIMA1-204ENST00000549064 RBM26Q5T8P6 1007 aaKnown RBP10□□□□□ -0.81
LIMA1-204ENST00000549064 RGPD8O14715 1765 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms