RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 PLEKHG5O94827 1062 aa18.78■□□□□ 0.6
PTCH1-218ENST00000548945 KRT27Q7Z3Y8 459 aa18.78■□□□□ 0.6
PTCH1-218ENST00000548945 ATP7BP35670 1465 aa18.77■□□□□ 0.6
PTCH1-218ENST00000548945 SF3B2Q13435 895 aaKnown RBP18.77■□□□□ 0.6
PTCH1-218ENST00000548945 NGDNQ8NEJ9 315 aaKnown RBP18.77■□□□□ 0.6
PTCH1-218ENST00000548945 BTG4Q9NY30 223 aa18.76■□□□□ 0.59
PTCH1-218ENST00000548945 TOPAZ1Q8N9V7 1692 aa18.74■□□□□ 0.59
PTCH1-218ENST00000548945 NUDT16Q96DE0 195 aaKnown RBP18.74■□□□□ 0.59
PTCH1-218ENST00000548945 PAK3O75914 559 aaPredicted RBP18.73■□□□□ 0.59
PTCH1-218ENST00000548945 DEFB132Q7Z7B7 95 aa18.72■□□□□ 0.59
PTCH1-218ENST00000548945 SPATA31A5Q5VU36 1347 aa18.72■□□□□ 0.59
PTCH1-218ENST00000548945 SPATA31A7Q8IWB4 1347 aa18.72■□□□□ 0.59
PTCH1-218ENST00000548945 PHRF1Q9P1Y6 1649 aaKnown RBP18.71■□□□□ 0.59
PTCH1-218ENST00000548945 POLR3AO14802 1390 aaPredicted RBP18.71■□□□□ 0.59
PTCH1-218ENST00000548945 THSD7AQ9UPZ6 1657 aa18.71■□□□□ 0.59
PTCH1-218ENST00000548945 FAM98CQ17RN3 349 aaKnown RBP18.71■□□□□ 0.59
PTCH1-218ENST00000548945 PRDM11Q9NQV5 511 aa18.71■□□□□ 0.59
PTCH1-218ENST00000548945 A0A0G2JS52 829 aa18.7■□□□□ 0.58
PTCH1-218ENST00000548945 MYT1Q01538 1121 aa18.7■□□□□ 0.58
PTCH1-218ENST00000548945 CDK19Q9BWU1 502 aa18.7■□□□□ 0.58
PTCH1-218ENST00000548945 RGPD1P0DJD0 1748 aa18.69■□□□□ 0.58
PTCH1-218ENST00000548945 CCDC61Q9Y6R9 512 aa18.69■□□□□ 0.58
PTCH1-218ENST00000548945 KIAA0232Q92628 1395 aa18.68■□□□□ 0.58
PTCH1-218ENST00000548945 PLEKHG3A1L390 1219 aa18.67■□□□□ 0.58
PTCH1-218ENST00000548945 BAG6P46379 1132 aa18.67■□□□□ 0.58
PTCH1-218ENST00000548945 ACEP12821 1306 aa18.66■□□□□ 0.58
PTCH1-218ENST00000548945 LRP5O75197 1615 aa18.65■□□□□ 0.58
PTCH1-218ENST00000548945 NBPF8Q3BBV2 869 aa18.65■□□□□ 0.58
PTCH1-218ENST00000548945 SPATA31A1Q5TZJ5 1347 aa18.64■□□□□ 0.57
PTCH1-218ENST00000548945 DISP2A7MBM2 1401 aa18.64■□□□□ 0.57
PTCH1-218ENST00000548945 NRKQ7Z2Y5 1582 aa18.63■□□□□ 0.57
PTCH1-218ENST00000548945 TNS1Q9HBL0 1735 aaKnown RBP18.63■□□□□ 0.57
PTCH1-218ENST00000548945 NBPF1Q3BBV0 1214 aa18.62■□□□□ 0.57
PTCH1-218ENST00000548945 BRD4O60885 1362 aaPredicted RBP18.62■□□□□ 0.57
PTCH1-218ENST00000548945 CPDO75976 1380 aa18.62■□□□□ 0.57
PTCH1-218ENST00000548945 USP19O94966 1318 aa18.61■□□□□ 0.57
PTCH1-218ENST00000548945 CENPJQ9HC77 1338 aaPredicted RBP18.61■□□□□ 0.57
PTCH1-218ENST00000548945 CHRNA2Q15822 529 aa18.61■□□□□ 0.57
PTCH1-218ENST00000548945 ZC3H6P61129 1189 aaKnown RBP18.6■□□□□ 0.57
PTCH1-218ENST00000548945 ABTB2Q8N961 1025 aa18.6■□□□□ 0.57
PTCH1-218ENST00000548945 LMO7Q8WWI1 1683 aa18.6■□□□□ 0.57
PTCH1-218ENST00000548945 QRICH2Q9H0J4 1663 aa18.6■□□□□ 0.57
PTCH1-218ENST00000548945 NUTM2GQ5VZR2 741 aa18.59■□□□□ 0.57
PTCH1-218ENST00000548945 STRN4Q9NRL3 753 aa18.59■□□□□ 0.57
PTCH1-218ENST00000548945 PPIP5K1Q6PFW1 1433 aa18.58■□□□□ 0.57
PTCH1-218ENST00000548945 SSH2Q76I76 1423 aa18.58■□□□□ 0.57
PTCH1-218ENST00000548945 FAM196AQ6ZSG2 479 aa18.58■□□□□ 0.56
PTCH1-218ENST00000548945 BARGINQ6ZT62 677 aa18.58■□□□□ 0.56
PTCH1-218ENST00000548945 CAMTA1Q9Y6Y1 1673 aa18.57■□□□□ 0.56
PTCH1-218ENST00000548945 SRPK2P78362 688 aaKnown RBP18.57■□□□□ 0.56
PTCH1-218ENST00000548945 FAM182BQ5T319 152 aa18.57■□□□□ 0.56
PTCH1-218ENST00000548945 NLRP13Q86W25 1043 aa18.57■□□□□ 0.56
PTCH1-218ENST00000548945 EVA1CP58658 441 aa18.56■□□□□ 0.56
PTCH1-218ENST00000548945 EN1Q05925 392 aaPredicted RBP18.56■□□□□ 0.56
PTCH1-218ENST00000548945 PARD3Q8TEW0 1356 aa18.55■□□□□ 0.56
PTCH1-218ENST00000548945 GCP02774 474 aa18.54■□□□□ 0.56
PTCH1-218ENST00000548945 THRAP3Q9Y2W1 955 aaKnown RBP18.54■□□□□ 0.56
PTCH1-218ENST00000548945 USP6P35125 1406 aa18.53■□□□□ 0.56
PTCH1-218ENST00000548945 TCP11L2Q8N4U5 519 aa18.53■□□□□ 0.56
PTCH1-218ENST00000548945 CABP2Q9NPB3 220 aa18.53■□□□□ 0.56
PTCH1-218ENST00000548945 TRPM1Q7Z4N2 1603 aa18.52■□□□□ 0.56
PTCH1-218ENST00000548945 PARP4Q9UKK3 1724 aaKnown RBP18.52■□□□□ 0.56
PTCH1-218ENST00000548945 PSDA5PKW4 1024 aaPredicted RBP18.52■□□□□ 0.56
PTCH1-218ENST00000548945 LARP1Q6PKG0 1096 aaKnown RBP18.52■□□□□ 0.56
PTCH1-218ENST00000548945 USP35Q9P2H5 1018 aa18.52■□□□□ 0.56
PTCH1-218ENST00000548945 TRIM37O94972 964 aa18.51■□□□□ 0.55
PTCH1-218ENST00000548945 PDE3BQ13370 1112 aa18.51■□□□□ 0.55
PTCH1-218ENST00000548945 L3MBTL2Q969R5 705 aa18.51■□□□□ 0.55
PTCH1-218ENST00000548945 CAMKK2Q96RR4 588 aa18.51■□□□□ 0.55
PTCH1-218ENST00000548945 COL5A2P05997 1499 aaPredicted RBP18.51■□□□□ 0.55
PTCH1-218ENST00000548945 SLIT3O75094 1523 aa18.5■□□□□ 0.55
PTCH1-218ENST00000548945 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
PTCH1-218ENST00000548945 EVC2Q86UK5 1308 aa18.49■□□□□ 0.55
PTCH1-218ENST00000548945 C11orf95C9JLR9 678 aaPredicted RBP18.49■□□□□ 0.55
PTCH1-218ENST00000548945 EZH2Q15910 746 aaKnown RBP18.49■□□□□ 0.55
PTCH1-218ENST00000548945 AATKQ6ZMQ8 1374 aa18.49■□□□□ 0.55
PTCH1-218ENST00000548945 RREB1Q92766 1687 aa18.49■□□□□ 0.55
PTCH1-218ENST00000548945 PIK3C2AO00443 1686 aa18.48■□□□□ 0.55
PTCH1-218ENST00000548945 CRB1P82279 1406 aa18.48■□□□□ 0.55
PTCH1-218ENST00000548945 APBA3O96018 575 aa18.47■□□□□ 0.55
PTCH1-218ENST00000548945 NLRP6P59044 892 aa18.47■□□□□ 0.55
PTCH1-218ENST00000548945 R3HDM1Q15032 1099 aaKnown RBP18.47■□□□□ 0.55
PTCH1-218ENST00000548945 COL18A1P39060 1754 aa18.47■□□□□ 0.55
PTCH1-218ENST00000548945 AKAP12Q02952 1782 aa18.47■□□□□ 0.55
PTCH1-218ENST00000548945 ZNF692Q9BU19 519 aaPredicted RBP18.45■□□□□ 0.54
PTCH1-218ENST00000548945 NUP188Q5SRE5 1749 aa18.45■□□□□ 0.54
PTCH1-218ENST00000548945 SBF2Q86WG5 1849 aa18.44■□□□□ 0.54
PTCH1-218ENST00000548945 ROCK2O75116 1388 aaKnown RBP18.43■□□□□ 0.54
PTCH1-218ENST00000548945 PEAK1Q9H792 1746 aa18.43■□□□□ 0.54
PTCH1-218ENST00000548945 RGPD3A6NKT7 1758 aaPredicted RBP18.43■□□□□ 0.54
PTCH1-218ENST00000548945 RGPD4Q7Z3J3 1758 aa18.43■□□□□ 0.54
PTCH1-218ENST00000548945 WNK3Q9BYP7 1800 aa18.43■□□□□ 0.54
PTCH1-218ENST00000548945 LRRC37A3O60309 1634 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 OVOS2A0A0G2JMS6 1433 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 OVOS2A0A0J9YW53 1432 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 OVOS2Q6IE36 1432 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 KCNH5Q8NCM2 988 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 SIN3AQ96ST3 1273 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 TTC21AQ8NDW8 1320 aa18.41■□□□□ 0.54
PTCH1-218ENST00000548945 CPSF1Q10570 1443 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms