RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ADH1CP00326 375 aa9.37□□□□□ -0.91
VPS29-205ENST00000548539 WDR4P57081 412 aaKnown RBP9.37□□□□□ -0.91
VPS29-205ENST00000548539 KCNH2Q12809 1159 aa9.37□□□□□ -0.91
VPS29-205ENST00000548539 ZNF511Q8NB15 262 aa9.37□□□□□ -0.91
VPS29-205ENST00000548539 SOBPA7XYQ1 873 aa9.36□□□□□ -0.91
VPS29-205ENST00000548539 VSIG8P0DPA2 414 aa9.35□□□□□ -0.91
VPS29-205ENST00000548539 TIMP2P16035 220 aa9.35□□□□□ -0.91
VPS29-205ENST00000548539 PRR7Q8TB68 274 aa9.33□□□□□ -0.92
VPS29-205ENST00000548539 SUZ12Q15022 739 aaKnown RBP9.32□□□□□ -0.92
VPS29-205ENST00000548539 FAM174AQ8TBP5 190 aa9.32□□□□□ -0.92
VPS29-205ENST00000548539 SPIRE2Q8WWL2 714 aa9.32□□□□□ -0.92
VPS29-205ENST00000548539 SPDYE5A6NIY4 337 aa9.31□□□□□ -0.92
VPS29-205ENST00000548539 MAN1A2O60476 641 aa9.31□□□□□ -0.92
VPS29-205ENST00000548539 NDUFV2P19404 249 aa9.31□□□□□ -0.92
VPS29-205ENST00000548539 KLF16Q9BXK1 252 aaPredicted RBP9.31□□□□□ -0.92
VPS29-205ENST00000548539 SSTR3P32745 418 aaPredicted RBP9.3□□□□□ -0.92
VPS29-205ENST00000548539 CTHP32929 405 aa9.3□□□□□ -0.92
VPS29-205ENST00000548539 MTMR2Q13614 643 aa9.3□□□□□ -0.92
VPS29-205ENST00000548539 ARID5BQ14865 1188 aa9.3□□□□□ -0.92
VPS29-205ENST00000548539 DESI1Q6ICB0 168 aa9.3□□□□□ -0.92
VPS29-205ENST00000548539 MOXD2PA6NHM9 499 aa9.29□□□□□ -0.92
VPS29-205ENST00000548539 KCNMA1Q12791 1236 aa9.29□□□□□ -0.92
VPS29-205ENST00000548539 TPRNQ4KMQ1 711 aa9.29□□□□□ -0.92
VPS29-205ENST00000548539 ZIC2O95409 532 aaPredicted RBP9.28□□□□□ -0.92
VPS29-205ENST00000548539 C6orf118Q5T5N4 469 aa9.28□□□□□ -0.92
VPS29-205ENST00000548539 KCTD17Q8N5Z5 321 aa9.27□□□□□ -0.93
VPS29-205ENST00000548539 CDK15Q96Q40 435 aa9.27□□□□□ -0.93
VPS29-205ENST00000548539 ZFAND3Q9H8U3 227 aa9.27□□□□□ -0.93
VPS29-205ENST00000548539 PPFIA3O75145 1194 aa9.26□□□□□ -0.93
VPS29-205ENST00000548539 UPP2O95045 317 aa9.26□□□□□ -0.93
VPS29-205ENST00000548539 ITPKCQ96DU7 683 aa9.26□□□□□ -0.93
VPS29-205ENST00000548539 BMP2P12643 396 aa9.25□□□□□ -0.93
VPS29-205ENST00000548539 NR5A1Q13285 461 aa9.25□□□□□ -0.93
VPS29-205ENST00000548539 LYPD8Q6UX82 237 aa9.24□□□□□ -0.93
VPS29-205ENST00000548539 FOXJ1Q92949 421 aa9.24□□□□□ -0.93
VPS29-205ENST00000548539 AGERQ15109 404 aa9.23□□□□□ -0.93
VPS29-205ENST00000548539 SPTLC1O15269 473 aa9.22□□□□□ -0.93
VPS29-205ENST00000548539 GSK3AP49840 483 aa9.22□□□□□ -0.93
VPS29-205ENST00000548539 TMEM151AQ8N4L1 468 aa9.22□□□□□ -0.93
VPS29-205ENST00000548539 NR3C2P08235 984 aa9.21□□□□□ -0.94
VPS29-205ENST00000548539 TTLL12Q14166 644 aaPredicted RBP9.21□□□□□ -0.94
VPS29-205ENST00000548539 LINC00528Q8N1L1 170 aa9.21□□□□□ -0.94
VPS29-205ENST00000548539 GDF11O95390 407 aa9.2□□□□□ -0.94
VPS29-205ENST00000548539 GRM5P41594 1212 aa9.2□□□□□ -0.94
VPS29-205ENST00000548539 GJA5P36382 358 aa9.19□□□□□ -0.94
VPS29-205ENST00000548539 RASSF7Q02833 373 aa9.19□□□□□ -0.94
VPS29-205ENST00000548539 BPHLQ86WA6 291 aaPredicted RBP9.19□□□□□ -0.94
VPS29-205ENST00000548539 MAP10Q9P2G4 905 aa9.19□□□□□ -0.94
VPS29-205ENST00000548539 RNF225M0QZC1 329 aaPredicted RBP9.18□□□□□ -0.94
VPS29-205ENST00000548539 SOS2Q07890 1332 aaPredicted RBP9.18□□□□□ -0.94
VPS29-205ENST00000548539 MEIOBQ8N635 442 aa9.18□□□□□ -0.94
VPS29-205ENST00000548539 BEGAINQ9BUH8 593 aa9.18□□□□□ -0.94
VPS29-205ENST00000548539 DNMT3LQ9UJW3 386 aa9.18□□□□□ -0.94
VPS29-205ENST00000548539 CFAP99D6REC4 459 aa9.17□□□□□ -0.94
VPS29-205ENST00000548539 DIXDC1Q155Q3 683 aa9.17□□□□□ -0.94
VPS29-205ENST00000548539 CNTNAP3BQ96NU0 1288 aa9.17□□□□□ -0.94
VPS29-205ENST00000548539 CNTNAP3Q9BZ76 1288 aa9.17□□□□□ -0.94
VPS29-205ENST00000548539 ADAMTS8Q9UP79 889 aa9.17□□□□□ -0.94
VPS29-205ENST00000548539 F12P00748 615 aaPredicted RBP9.16□□□□□ -0.94
VPS29-205ENST00000548539 C4orf48Q5BLP8 95 aa9.16□□□□□ -0.94
VPS29-205ENST00000548539 RSBN1LQ6PCB5 846 aaPredicted RBP9.16□□□□□ -0.94
VPS29-205ENST00000548539 TSEN34Q9BSV6 310 aaKnown RBP9.16□□□□□ -0.94
VPS29-205ENST00000548539 TBC1D2Q9BYX2 928 aa9.16□□□□□ -0.94
VPS29-205ENST00000548539 PCDHB15Q9Y5E8 787 aa9.16□□□□□ -0.94
VPS29-205ENST00000548539 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.15□□□□□ -0.94
VPS29-205ENST00000548539 GIGYF2Q6Y7W6 1299 aaKnown RBP9.15□□□□□ -0.94
VPS29-205ENST00000548539 GPR161Q8N6U8 529 aaKnown RBP9.15□□□□□ -0.94
VPS29-205ENST00000548539 ZBTB3Q9H5J0 574 aa9.15□□□□□ -0.94
VPS29-205ENST00000548539 HRCP23327 699 aa9.14□□□□□ -0.95
VPS29-205ENST00000548539 KRT76Q01546 638 aa9.14□□□□□ -0.95
VPS29-205ENST00000548539 TTLL8A6PVC2 850 aa9.12□□□□□ -0.95
VPS29-205ENST00000548539 FSHRP23945 695 aa9.12□□□□□ -0.95
VPS29-205ENST00000548539 AMHR2Q16671 573 aa9.12□□□□□ -0.95
VPS29-205ENST00000548539 ARMC2Q8NEN0 867 aa9.12□□□□□ -0.95
VPS29-205ENST00000548539 COL25A1Q9BXS0 654 aaPredicted RBP9.12□□□□□ -0.95
VPS29-205ENST00000548539 EMILIN1Q9Y6C2 1016 aa9.12□□□□□ -0.95
VPS29-205ENST00000548539 PTSQ03393 145 aa9.11□□□□□ -0.95
VPS29-205ENST00000548539 VASH1Q7L8A9 365 aaPredicted RBP9.11□□□□□ -0.95
VPS29-205ENST00000548539 PER1O15534 1290 aaPredicted RBP9.1□□□□□ -0.95
VPS29-205ENST00000548539 PRPF38BQ5VTL8 546 aaKnown RBP9.1□□□□□ -0.95
VPS29-205ENST00000548539 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.1□□□□□ -0.95
VPS29-205ENST00000548539 SVOPQ8N4V2 548 aa9.1□□□□□ -0.95
VPS29-205ENST00000548539 MAP4K5Q9Y4K4 846 aa9.1□□□□□ -0.95
VPS29-205ENST00000548539 FIGNL2A6NMB9 653 aa9.09□□□□□ -0.95
VPS29-205ENST00000548539 TSC1Q92574 1164 aa9.09□□□□□ -0.95
VPS29-205ENST00000548539 C1QTNF2Q9BXJ5 285 aa9.09□□□□□ -0.95
VPS29-205ENST00000548539 CSPP1Q1MSJ5 1256 aa9.08□□□□□ -0.96
VPS29-205ENST00000548539 ZNF385CQ66K41 422 aaPredicted RBP9.08□□□□□ -0.96
VPS29-205ENST00000548539 BARGINQ6ZT62 677 aa9.08□□□□□ -0.96
VPS29-205ENST00000548539 RIC3Q7Z5B4 369 aa9.08□□□□□ -0.96
VPS29-205ENST00000548539 CCDC116Q8IYX3 515 aa9.08□□□□□ -0.96
VPS29-205ENST00000548539 CABLES1Q8TDN4 633 aa9.08□□□□□ -0.96
VPS29-205ENST00000548539 NANOS1Q8WY41 292 aaKnown RBP9.08□□□□□ -0.96
VPS29-205ENST00000548539 NBPF14Q5TI25 921 aa9.07□□□□□ -0.96
VPS29-205ENST00000548539 SH3RF1Q7Z6J0 888 aa9.07□□□□□ -0.96
VPS29-205ENST00000548539 TRMT44Q8IYL2 757 aaKnown RBP9.07□□□□□ -0.96
VPS29-205ENST00000548539 CCDC155Q8N6L0 562 aa9.07□□□□□ -0.96
VPS29-205ENST00000548539 MAGEB6P1A0A0J9YX57 407 aa9.06□□□□□ -0.96
VPS29-205ENST00000548539 GPAT2Q6NUI2 795 aa9.06□□□□□ -0.96
VPS29-205ENST00000548539 NUTM2BA6NNL0 878 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms