RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 CCDC9Q9Y3X0 531 aaKnown RBP13.18□□□□□ -0.3
YBX3-215ENST00000544504 USP32Q8NFA0 1604 aa13.17□□□□□ -0.3
YBX3-215ENST00000544504 EVC2Q86UK5 1308 aa13.17□□□□□ -0.3
YBX3-215ENST00000544504 YY1P25490 414 aa13.17□□□□□ -0.3
YBX3-215ENST00000544504 HAP1P54257 671 aaPredicted RBP13.17□□□□□ -0.3
YBX3-215ENST00000544504 R3HDM1Q15032 1099 aaKnown RBP13.17□□□□□ -0.3
YBX3-215ENST00000544504 KIF7Q2M1P5 1343 aa13.15□□□□□ -0.3
YBX3-215ENST00000544504 WASHC2AQ641Q2 1341 aa13.15□□□□□ -0.3
YBX3-215ENST00000544504 A0A0G2JS52 829 aa13.15□□□□□ -0.3
YBX3-215ENST00000544504 MYT1Q01538 1121 aa13.15□□□□□ -0.3
YBX3-215ENST00000544504 EN1Q05925 392 aaPredicted RBP13.15□□□□□ -0.3
YBX3-215ENST00000544504 NUTM2FA1L443 756 aa13.13□□□□□ -0.31
YBX3-215ENST00000544504 KRT28Q7Z3Y7 464 aa13.13□□□□□ -0.31
YBX3-215ENST00000544504 DISP2A7MBM2 1401 aa13.13□□□□□ -0.31
YBX3-215ENST00000544504 NWD2Q9ULI1 1742 aa13.12□□□□□ -0.31
YBX3-215ENST00000544504 TNS3Q68CZ2 1445 aa13.12□□□□□ -0.31
YBX3-215ENST00000544504 C11orf95C9JLR9 678 aaPredicted RBP13.11□□□□□ -0.31
YBX3-215ENST00000544504 PSME1Q06323 249 aa13.11□□□□□ -0.31
YBX3-215ENST00000544504 SAFB2Q14151 953 aaKnown RBP eCLIP13.11□□□□□ -0.31
YBX3-215ENST00000544504 FAM98CQ17RN3 349 aaKnown RBP13.11□□□□□ -0.31
YBX3-215ENST00000544504 DIEXFQ68CQ4 756 aaKnown RBP13.11□□□□□ -0.31
YBX3-215ENST00000544504 WAPLQ7Z5K2 1190 aa13.11□□□□□ -0.31
YBX3-215ENST00000544504 CABLES1Q8TDN4 633 aa13.11□□□□□ -0.31
YBX3-215ENST00000544504 POLR3GLQ9BT43 218 aa13.11□□□□□ -0.31
YBX3-215ENST00000544504 ADGRB2O60241 1585 aa13.11□□□□□ -0.31
YBX3-215ENST00000544504 MINK1Q8N4C8 1332 aaPredicted RBP13.11□□□□□ -0.31
YBX3-215ENST00000544504 NINLQ9Y2I6 1382 aa13.1□□□□□ -0.31
YBX3-215ENST00000544504 KIF1AQ12756 1690 aa13.1□□□□□ -0.31
YBX3-215ENST00000544504 DDX10Q13206 875 aaKnown RBP13.1□□□□□ -0.31
YBX3-215ENST00000544504 PLEKHH1Q9ULM0 1364 aa13.09□□□□□ -0.31
YBX3-215ENST00000544504 PLCH1Q4KWH8 1693 aa13.09□□□□□ -0.31
YBX3-215ENST00000544504 UTRNP46939 3433 aa13.09□□□□□ -0.31
YBX3-215ENST00000544504 FAM83GA6ND36 823 aa13.09□□□□□ -0.31
YBX3-215ENST00000544504 TULP4Q9NRJ4 1543 aa13.08□□□□□ -0.31
YBX3-215ENST00000544504 SBNO1A3KN83 1393 aa13.08□□□□□ -0.31
YBX3-215ENST00000544504 ARHGEF10O15013 1369 aa13.08□□□□□ -0.31
YBX3-215ENST00000544504 RGPD1P0DJD0 1748 aa13.08□□□□□ -0.32
YBX3-215ENST00000544504 WASLO00401 505 aaPredicted RBP13.08□□□□□ -0.32
YBX3-215ENST00000544504 SRPK2P78362 688 aaKnown RBP13.08□□□□□ -0.32
YBX3-215ENST00000544504 EZH2Q15910 746 aaKnown RBP13.08□□□□□ -0.32
YBX3-215ENST00000544504 DCAF8L1A6NGE4 600 aa13.07□□□□□ -0.32
YBX3-215ENST00000544504 CDK19Q9BWU1 502 aa13.07□□□□□ -0.32
YBX3-215ENST00000544504 PHF8Q9UPP1 1060 aa13.07□□□□□ -0.32
YBX3-215ENST00000544504 PARD3Q8TEW0 1356 aa13.07□□□□□ -0.32
YBX3-215ENST00000544504 PLEKHG5O94827 1062 aa13.06□□□□□ -0.32
YBX3-215ENST00000544504 FAM182BQ5T319 152 aa13.06□□□□□ -0.32
YBX3-215ENST00000544504 LMOD2Q6P5Q4 547 aa13.06□□□□□ -0.32
YBX3-215ENST00000544504 CAMKK2Q96RR4 588 aa13.06□□□□□ -0.32
YBX3-215ENST00000544504 BTG4Q9NY30 223 aa13.06□□□□□ -0.32
YBX3-215ENST00000544504 FMN2Q9NZ56 1722 aa13.05□□□□□ -0.32
YBX3-215ENST00000544504 SPATA31A5Q5VU36 1347 aa13.04□□□□□ -0.32
YBX3-215ENST00000544504 SPATA31A7Q8IWB4 1347 aa13.04□□□□□ -0.32
YBX3-215ENST00000544504 ANKARQ7Z5J8 1434 aa13.04□□□□□ -0.32
YBX3-215ENST00000544504 CABP2Q9NPB3 220 aa13.03□□□□□ -0.32
YBX3-215ENST00000544504 TERF2IPQ9NYB0 399 aa13.03□□□□□ -0.32
YBX3-215ENST00000544504 CCDC61Q9Y6R9 512 aa13.03□□□□□ -0.32
YBX3-215ENST00000544504 NRAPQ86VF7 1730 aa13.02□□□□□ -0.32
YBX3-215ENST00000544504 TNS1Q9HBL0 1735 aaKnown RBP13.02□□□□□ -0.32
YBX3-215ENST00000544504 FAM196AQ6ZSG2 479 aa13.02□□□□□ -0.33
YBX3-215ENST00000544504 TMC1Q8TDI8 760 aa13.02□□□□□ -0.33
YBX3-215ENST00000544504 PPP1R1BQ9UD71 204 aaPredicted RBP13.02□□□□□ -0.33
YBX3-215ENST00000544504 ABCA3Q99758 1704 aa13.02□□□□□ -0.33
YBX3-215ENST00000544504 TRIM37O94972 964 aa13.01□□□□□ -0.33
YBX3-215ENST00000544504 APBA3O96018 575 aa13.01□□□□□ -0.33
YBX3-215ENST00000544504 NBPF14Q5TI25 921 aa13.01□□□□□ -0.33
YBX3-215ENST00000544504 HDGFL2Q7Z4V5 671 aaPredicted RBP13.01□□□□□ -0.33
YBX3-215ENST00000544504 NUDT16Q96DE0 195 aaKnown RBP13.01□□□□□ -0.33
YBX3-215ENST00000544504 PANK3Q9H999 370 aa13.01□□□□□ -0.33
YBX3-215ENST00000544504 MYOM1P52179 1685 aa13.01□□□□□ -0.33
YBX3-215ENST00000544504 THSD7AQ9UPZ6 1657 aa13□□□□□ -0.33
YBX3-215ENST00000544504 ATP7BP35670 1465 aa13□□□□□ -0.33
YBX3-215ENST00000544504 ANKRD36BQ8N2N9 1353 aa13□□□□□ -0.33
YBX3-215ENST00000544504 ANP32CO43423 234 aa13□□□□□ -0.33
YBX3-215ENST00000544504 SPON1Q9HCB6 807 aa13□□□□□ -0.33
YBX3-215ENST00000544504 KNSTRNQ9Y448 316 aa13□□□□□ -0.33
YBX3-215ENST00000544504 COL14A1Q05707 1796 aaKnown RBP12.99□□□□□ -0.33
YBX3-215ENST00000544504 ITSN1Q15811 1721 aa12.99□□□□□ -0.33
YBX3-215ENST00000544504 KTN1Q86UP2 1357 aaKnown RBP12.99□□□□□ -0.33
YBX3-215ENST00000544504 PPIP5K1Q6PFW1 1433 aa12.98□□□□□ -0.33
YBX3-215ENST00000544504 KCNQ2O43526 872 aa12.98□□□□□ -0.33
YBX3-215ENST00000544504 ZNF692Q9BU19 519 aaPredicted RBP12.98□□□□□ -0.33
YBX3-215ENST00000544504 SLC12A5Q9H2X9 1139 aa12.98□□□□□ -0.33
YBX3-215ENST00000544504 PLEKHG3A1L390 1219 aa12.97□□□□□ -0.33
YBX3-215ENST00000544504 CABP1Q9NZU7 370 aa12.97□□□□□ -0.33
YBX3-215ENST00000544504 NPC1L1Q9UHC9 1359 aa12.96□□□□□ -0.33
YBX3-215ENST00000544504 TOPAZ1Q8N9V7 1692 aa12.96□□□□□ -0.33
YBX3-215ENST00000544504 SPATA31A1Q5TZJ5 1347 aa12.96□□□□□ -0.33
YBX3-215ENST00000544504 PMFBP1Q8TBY8 1022 aa12.96□□□□□ -0.33
YBX3-215ENST00000544504 CGNL1Q0VF96 1302 aa12.95□□□□□ -0.34
YBX3-215ENST00000544504 PRR36Q9H6K5 1346 aa12.95□□□□□ -0.34
YBX3-215ENST00000544504 PER1O15534 1290 aaPredicted RBP12.95□□□□□ -0.34
YBX3-215ENST00000544504 IFFO2Q5TF58 517 aa12.95□□□□□ -0.34
YBX3-215ENST00000544504 PRDM11Q9NQV5 511 aa12.95□□□□□ -0.34
YBX3-215ENST00000544504 CEP350Q5VT06 3117 aa12.95□□□□□ -0.34
YBX3-215ENST00000544504 RREB1Q92766 1687 aa12.94□□□□□ -0.34
YBX3-215ENST00000544504 ZNF784Q8NCA9 323 aaPredicted RBP12.94□□□□□ -0.34
YBX3-215ENST00000544504 A0A1W2PP64 1363 aa12.94□□□□□ -0.34
YBX3-215ENST00000544504 BRD4O60885 1362 aaPredicted RBP12.94□□□□□ -0.34
YBX3-215ENST00000544504 NSD2O96028 1365 aa12.94□□□□□ -0.34
YBX3-215ENST00000544504 SENP3-EIF4A1A0A087X0R7 540 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms