RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NKTRP30414 1462 aaKnown RBP18.96■□□□□ 0.63
VPS33A-209ENST00000544349 ACEP12821 1306 aa18.96■□□□□ 0.63
VPS33A-209ENST00000544349 RGPD8O14715 1765 aaPredicted RBP18.95■□□□□ 0.62
VPS33A-209ENST00000544349 FMN2Q9NZ56 1722 aa18.94■□□□□ 0.62
VPS33A-209ENST00000544349 PDE3BQ13370 1112 aa18.94■□□□□ 0.62
VPS33A-209ENST00000544349 NME9Q86XW9 330 aa18.94■□□□□ 0.62
VPS33A-209ENST00000544349 ANKARQ7Z5J8 1434 aa18.93■□□□□ 0.62
VPS33A-209ENST00000544349 NALCNQ8IZF0 1738 aa18.93■□□□□ 0.62
VPS33A-209ENST00000544349 NRKQ7Z2Y5 1582 aa18.93■□□□□ 0.62
VPS33A-209ENST00000544349 CCDC146Q8IYE0 955 aa18.92■□□□□ 0.62
VPS33A-209ENST00000544349 NWD1Q149M9 1564 aa18.91■□□□□ 0.62
VPS33A-209ENST00000544349 USP6P35125 1406 aa18.91■□□□□ 0.62
VPS33A-209ENST00000544349 TTC21BQ7Z4L5 1316 aa18.9■□□□□ 0.62
VPS33A-209ENST00000544349 PMFBP1Q8TBY8 1022 aa18.9■□□□□ 0.62
VPS33A-209ENST00000544349 ZRANB1Q9UGI0 708 aa18.9■□□□□ 0.62
VPS33A-209ENST00000544349 COL3A1P02461 1466 aaPredicted RBP18.89■□□□□ 0.62
VPS33A-209ENST00000544349 COG3Q96JB2 828 aa18.89■□□□□ 0.62
VPS33A-209ENST00000544349 MAP2P11137 1827 aaKnown RBP18.89■□□□□ 0.61
VPS33A-209ENST00000544349 RBM33Q96EV2 1170 aaKnown RBP18.89■□□□□ 0.61
VPS33A-209ENST00000544349 ADGRL3Q9HAR2 1447 aa18.89■□□□□ 0.61
VPS33A-209ENST00000544349 PNPLA6Q8IY17 1366 aa18.88■□□□□ 0.61
VPS33A-209ENST00000544349 SSH2Q76I76 1423 aa18.88■□□□□ 0.61
VPS33A-209ENST00000544349 POLKQ9UBT6 870 aa18.88■□□□□ 0.61
VPS33A-209ENST00000544349 APAF1O14727 1248 aa18.87■□□□□ 0.61
VPS33A-209ENST00000544349 FBLN1P23142 703 aa18.87■□□□□ 0.61
VPS33A-209ENST00000544349 MYT1Q01538 1121 aa18.87■□□□□ 0.61
VPS33A-209ENST00000544349 AATKQ6ZMQ8 1374 aa18.87■□□□□ 0.61
VPS33A-209ENST00000544349 NGDNQ8NEJ9 315 aaKnown RBP18.86■□□□□ 0.61
VPS33A-209ENST00000544349 CDCA7LQ96GN5 454 aa18.86■□□□□ 0.61
VPS33A-209ENST00000544349 ANP32EQ9BTT0 268 aa18.86■□□□□ 0.61
VPS33A-209ENST00000544349 ZNF521Q96K83 1311 aa18.86■□□□□ 0.61
VPS33A-209ENST00000544349 RUNDC1Q96C34 613 aa18.85■□□□□ 0.61
VPS33A-209ENST00000544349 HSPA2P54652 639 aa18.85■□□□□ 0.61
VPS33A-209ENST00000544349 NGEFQ8N5V2 710 aa18.85■□□□□ 0.61
VPS33A-209ENST00000544349 TTC21AQ8NDW8 1320 aa18.84■□□□□ 0.61
VPS33A-209ENST00000544349 MSH5O43196 834 aa18.83■□□□□ 0.61
VPS33A-209ENST00000544349 U2AF1L5P0DN76 240 aaPredicted RBP18.83■□□□□ 0.61
VPS33A-209ENST00000544349 U2AF1Q01081 240 aaKnown RBP eCLIP18.83■□□□□ 0.61
VPS33A-209ENST00000544349 OVOS2A0A0J9YW53 1432 aa18.83■□□□□ 0.61
VPS33A-209ENST00000544349 OVOS2Q6IE36 1432 aa18.83■□□□□ 0.61
VPS33A-209ENST00000544349 DIAPH1O60610 1272 aaKnown RBP18.83■□□□□ 0.6
VPS33A-209ENST00000544349 PROSER2Q86WR7 435 aaPredicted RBP18.82■□□□□ 0.6
VPS33A-209ENST00000544349 C14orf37Q86TY3 774 aa18.82■□□□□ 0.6
VPS33A-209ENST00000544349 EMILIN1Q9Y6C2 1016 aa18.82■□□□□ 0.6
VPS33A-209ENST00000544349 LMTK3Q96Q04 1460 aa18.81■□□□□ 0.6
VPS33A-209ENST00000544349 PPM1GO15355 546 aaPredicted RBP18.81■□□□□ 0.6
VPS33A-209ENST00000544349 RRP1P56182 461 aaKnown RBP18.81■□□□□ 0.6
VPS33A-209ENST00000544349 U2SURPO15042 1029 aaKnown RBP18.8■□□□□ 0.6
VPS33A-209ENST00000544349 IQSEC2Q5JU85 1478 aa18.8■□□□□ 0.6
VPS33A-209ENST00000544349 GOLGA2Q08379 1002 aa18.8■□□□□ 0.6
VPS33A-209ENST00000544349 PHF8Q9UPP1 1060 aa18.8■□□□□ 0.6
VPS33A-209ENST00000544349 CDK12Q9NYV4 1490 aaPredicted RBP18.8■□□□□ 0.6
VPS33A-209ENST00000544349 USP31Q70CQ4 1352 aa18.79■□□□□ 0.6
VPS33A-209ENST00000544349 FANCIQ9NVI1 1328 aa18.79■□□□□ 0.6
VPS33A-209ENST00000544349 TCP11L2Q8N4U5 519 aa18.79■□□□□ 0.6
VPS33A-209ENST00000544349 RRS1Q15050 365 aaKnown RBP18.78■□□□□ 0.6
VPS33A-209ENST00000544349 CCDC136Q96JN2 1154 aa18.78■□□□□ 0.6
VPS33A-209ENST00000544349 RCAN3Q9UKA8 241 aa18.78■□□□□ 0.6
VPS33A-209ENST00000544349 STRCP1A6NGW2 1772 aa18.78■□□□□ 0.6
VPS33A-209ENST00000544349 PIK3C2AO00443 1686 aa18.77■□□□□ 0.59
VPS33A-209ENST00000544349 PLEKHF1Q96S99 279 aa18.76■□□□□ 0.59
VPS33A-209ENST00000544349 NCBP3Q53F19 620 aaKnown RBP18.76■□□□□ 0.59
VPS33A-209ENST00000544349 ESCO1Q5FWF5 840 aa18.76■□□□□ 0.59
VPS33A-209ENST00000544349 STRCQ7RTU9 1775 aa18.75■□□□□ 0.59
VPS33A-209ENST00000544349 SLFN5Q08AF3 891 aa18.75■□□□□ 0.59
VPS33A-209ENST00000544349 DUSP27Q5VZP5 1158 aa18.75■□□□□ 0.59
VPS33A-209ENST00000544349 C19orf44Q9H6X5 657 aa18.75■□□□□ 0.59
VPS33A-209ENST00000544349 WWC1Q8IX03 1113 aa18.74■□□□□ 0.59
VPS33A-209ENST00000544349 RRP7AQ9Y3A4 280 aaKnown RBP18.74■□□□□ 0.59
VPS33A-209ENST00000544349 IL13P35225 146 aa18.74■□□□□ 0.59
VPS33A-209ENST00000544349 TRMT2AQ8IZ69 625 aaKnown RBP18.74■□□□□ 0.59
VPS33A-209ENST00000544349 EXOC6Q8TAG9 804 aa18.74■□□□□ 0.59
VPS33A-209ENST00000544349 PHF23Q9BUL5 403 aaPredicted RBP18.74■□□□□ 0.59
VPS33A-209ENST00000544349 NEUROD2Q15784 382 aa18.73■□□□□ 0.59
VPS33A-209ENST00000544349 PNNQ9H307 717 aaKnown RBP18.73■□□□□ 0.59
VPS33A-209ENST00000544349 FCHSD2O94868 740 aa18.73■□□□□ 0.59
VPS33A-209ENST00000544349 CCDC27Q2M243 656 aa18.73■□□□□ 0.59
VPS33A-209ENST00000544349 USP54Q70EL1 1684 aa18.73■□□□□ 0.59
VPS33A-209ENST00000544349 NCOA3Q9Y6Q9 1424 aa18.73■□□□□ 0.59
VPS33A-209ENST00000544349 TMEM94Q12767 1356 aa18.72■□□□□ 0.59
VPS33A-209ENST00000544349 SPINK5Q9NQ38 1064 aaPredicted RBP18.72■□□□□ 0.59
VPS33A-209ENST00000544349 NLRP6P59044 892 aa18.71■□□□□ 0.59
VPS33A-209ENST00000544349 E9PSI1 815 aa18.71■□□□□ 0.59
VPS33A-209ENST00000544349 ORAI2Q96SN7 254 aa18.71■□□□□ 0.59
VPS33A-209ENST00000544349 DMRT2Q9Y5R5 561 aa18.71■□□□□ 0.59
VPS33A-209ENST00000544349 MARF1Q9Y4F3 1742 aaKnown RBP18.71■□□□□ 0.59
VPS33A-209ENST00000544349 PAK3O75914 559 aaPredicted RBP18.7■□□□□ 0.58
VPS33A-209ENST00000544349 ABTB2Q8N961 1025 aa18.7■□□□□ 0.58
VPS33A-209ENST00000544349 PEAK1Q9H792 1746 aa18.7■□□□□ 0.58
VPS33A-209ENST00000544349 MAPK8IP3Q9UPT6 1336 aa18.7■□□□□ 0.58
VPS33A-209ENST00000544349 PSME1Q06323 249 aa18.7■□□□□ 0.58
VPS33A-209ENST00000544349 RSPH6AQ9H0K4 717 aa18.7■□□□□ 0.58
VPS33A-209ENST00000544349 LRRC7Q96NW7 1537 aa18.69■□□□□ 0.58
VPS33A-209ENST00000544349 SOX12O15370 315 aa18.69■□□□□ 0.58
VPS33A-209ENST00000544349 C1orf167Q5SNV9 1468 aa18.69■□□□□ 0.58
VPS33A-209ENST00000544349 TMPOP42166 694 aaKnown RBP18.68■□□□□ 0.58
VPS33A-209ENST00000544349 ILDR1Q86SU0 546 aaPredicted RBP18.68■□□□□ 0.58
VPS33A-209ENST00000544349 WDR63Q8IWG1 891 aa18.68■□□□□ 0.58
VPS33A-209ENST00000544349 DCCP43146 1447 aa18.68■□□□□ 0.58
VPS33A-209ENST00000544349 NUTM2GQ5VZR2 741 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms