RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 PSEN1P49768 467 aa14.19□□□□□ -0.14
CDH3-203ENST00000542274 ZNF622Q969S3 477 aaKnown RBP eCLIP14.19□□□□□ -0.14
CDH3-203ENST00000542274 CERS3Q8IU89 383 aa14.19□□□□□ -0.14
CDH3-203ENST00000542274 BRD4O60885 1362 aaPredicted RBP14.18□□□□□ -0.14
CDH3-203ENST00000542274 C14orf93Q9H972 538 aaKnown RBP14.18□□□□□ -0.14
CDH3-203ENST00000542274 NLRP13Q86W25 1043 aa14.18□□□□□ -0.14
CDH3-203ENST00000542274 LRPPRCP42704 1394 aaKnown RBP14.17□□□□□ -0.14
CDH3-203ENST00000542274 NGEFQ8N5V2 710 aa14.16□□□□□ -0.14
CDH3-203ENST00000542274 FER1L4A9Z1Z3 1794 aa14.16□□□□□ -0.14
CDH3-203ENST00000542274 ADGRB1O14514 1584 aa14.16□□□□□ -0.14
CDH3-203ENST00000542274 A2ML1A8K2U0 1454 aa14.16□□□□□ -0.14
CDH3-203ENST00000542274 B4GALNT3Q6L9W6 998 aa14.16□□□□□ -0.14
CDH3-203ENST00000542274 STK26Q9P289 416 aa14.15□□□□□ -0.14
CDH3-203ENST00000542274 EIF3AQ14152 1382 aaKnown RBP14.15□□□□□ -0.14
CDH3-203ENST00000542274 TNNT2P45379 298 aaPredicted RBP14.14□□□□□ -0.15
CDH3-203ENST00000542274 TNRQ92752 1358 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 SETBP1Q9Y6X0 1596 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 ZBTB22O15209 634 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 C3P01024 1663 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 MCCP23508 829 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 SAFB2Q14151 953 aaKnown RBP eCLIP14.14□□□□□ -0.15
CDH3-203ENST00000542274 NUDCQ9Y266 331 aa14.14□□□□□ -0.15
CDH3-203ENST00000542274 KNSTRNQ9Y448 316 aa14.13□□□□□ -0.15
CDH3-203ENST00000542274 ASXL1Q8IXJ9 1541 aa14.13□□□□□ -0.15
CDH3-203ENST00000542274 AEBP1Q8IUX7 1158 aa14.13□□□□□ -0.15
CDH3-203ENST00000542274 MAP7D2Q96T17 732 aa14.13□□□□□ -0.15
CDH3-203ENST00000542274 RIMS2Q9UQ26 1411 aa14.12□□□□□ -0.15
CDH3-203ENST00000542274 QRICH2Q9H0J4 1663 aa14.12□□□□□ -0.15
CDH3-203ENST00000542274 SMG6Q86US8 1419 aaKnown RBP14.11□□□□□ -0.15
CDH3-203ENST00000542274 CDCA7LQ96GN5 454 aa14.11□□□□□ -0.15
CDH3-203ENST00000542274 ARHGEF28Q8N1W1 1705 aaKnown RBP14.1□□□□□ -0.15
CDH3-203ENST00000542274 AXDND1Q5T1B0 1012 aaPredicted RBP14.1□□□□□ -0.15
CDH3-203ENST00000542274 ZFYVE9O95405 1425 aa14.1□□□□□ -0.15
CDH3-203ENST00000542274 KIF20AO95235 890 aa14.1□□□□□ -0.15
CDH3-203ENST00000542274 HMGB1P09429 215 aaKnown RBP14.1□□□□□ -0.15
CDH3-203ENST00000542274 MYO3AQ8NEV4 1616 aa14.1□□□□□ -0.15
CDH3-203ENST00000542274 MYOM1P52179 1685 aa14.1□□□□□ -0.15
CDH3-203ENST00000542274 KDM5AP29375 1690 aaKnown RBP14.09□□□□□ -0.15
CDH3-203ENST00000542274 UBR1Q8IWV7 1749 aa14.09□□□□□ -0.15
CDH3-203ENST00000542274 PPP2R1AP30153 589 aa14.09□□□□□ -0.15
CDH3-203ENST00000542274 CARD14Q9BXL6 1004 aa14.09□□□□□ -0.15
CDH3-203ENST00000542274 ALKQ9UM73 1620 aa14.09□□□□□ -0.15
CDH3-203ENST00000542274 OS9Q13438 667 aaPredicted RBP14.08□□□□□ -0.16
CDH3-203ENST00000542274 ADAMTS8Q9UP79 889 aa14.08□□□□□ -0.16
CDH3-203ENST00000542274 RIMS1Q86UR5 1692 aaKnown RBP14.08□□□□□ -0.16
CDH3-203ENST00000542274 ZSCAN20P17040 1043 aaPredicted RBP14.07□□□□□ -0.16
CDH3-203ENST00000542274 PTMSP20962 102 aa14.07□□□□□ -0.16
CDH3-203ENST00000542274 CHMP4CQ96CF2 233 aa14.07□□□□□ -0.16
CDH3-203ENST00000542274 PHF14O94880 888 aa14.07□□□□□ -0.16
CDH3-203ENST00000542274 PTPRMP28827 1452 aa14.06□□□□□ -0.16
CDH3-203ENST00000542274 CDCA8Q53HL2 280 aa14.06□□□□□ -0.16
CDH3-203ENST00000542274 SLC12A5Q9H2X9 1139 aa14.06□□□□□ -0.16
CDH3-203ENST00000542274 PRDM16Q9HAZ2 1276 aa14.05□□□□□ -0.16
CDH3-203ENST00000542274 PSMD1Q99460 953 aa14.05□□□□□ -0.16
CDH3-203ENST00000542274 NRXN3Q9Y4C0 1643 aa14.05□□□□□ -0.16
CDH3-203ENST00000542274 YTHDC2Q9H6S0 1430 aaKnown RBP14.05□□□□□ -0.16
CDH3-203ENST00000542274 SETD1AO15047 1707 aaKnown RBP14.04□□□□□ -0.16
CDH3-203ENST00000542274 PUS7Q96PZ0 661 aaKnown RBP14.03□□□□□ -0.16
CDH3-203ENST00000542274 PRAM1Q96QH2 718 aa14.03□□□□□ -0.16
CDH3-203ENST00000542274 ARID3AQ99856 593 aa14.03□□□□□ -0.16
CDH3-203ENST00000542274 MINK1Q8N4C8 1332 aaPredicted RBP14.03□□□□□ -0.16
CDH3-203ENST00000542274 TMEM2Q9UHN6 1383 aa14.03□□□□□ -0.16
CDH3-203ENST00000542274 LTKP29376 864 aa14.02□□□□□ -0.16
CDH3-203ENST00000542274 L1TD1Q5T7N2 865 aaKnown RBP14.02□□□□□ -0.16
CDH3-203ENST00000542274 TAF3Q5VWG9 929 aa14.02□□□□□ -0.16
CDH3-203ENST00000542274 CCDC146Q8IYE0 955 aa14.02□□□□□ -0.16
CDH3-203ENST00000542274 FAM13BQ9NYF5 915 aa14.02□□□□□ -0.16
CDH3-203ENST00000542274 TULP4Q9NRJ4 1543 aa14.02□□□□□ -0.17
CDH3-203ENST00000542274 SBNO2Q9Y2G9 1366 aa14.01□□□□□ -0.17
CDH3-203ENST00000542274 CABP2Q9NPB3 220 aa14.01□□□□□ -0.17
CDH3-203ENST00000542274 POGKQ9P215 609 aa14.01□□□□□ -0.17
CDH3-203ENST00000542274 METP08581 1390 aa14.01□□□□□ -0.17
CDH3-203ENST00000542274 LETM1O95202 739 aaPredicted RBP14.01□□□□□ -0.17
CDH3-203ENST00000542274 WAPLQ7Z5K2 1190 aa14.01□□□□□ -0.17
CDH3-203ENST00000542274 ZNF526Q8TF50 670 aaPredicted RBP14.01□□□□□ -0.17
CDH3-203ENST00000542274 PRR29P0C7W0 189 aa14□□□□□ -0.17
CDH3-203ENST00000542274 NLRP1Q9C000 1473 aa14□□□□□ -0.17
CDH3-203ENST00000542274 BLMP54132 1417 aaPredicted RBP14□□□□□ -0.17
CDH3-203ENST00000542274 KIAA1211Q6ZU35 1233 aa14□□□□□ -0.17
CDH3-203ENST00000542274 ABCF1Q8NE71 845 aaKnown RBP eCLIP14□□□□□ -0.17
CDH3-203ENST00000542274 CARD10Q9BWT7 1032 aa14□□□□□ -0.17
CDH3-203ENST00000542274 RNF123Q5XPI4 1314 aa14□□□□□ -0.17
CDH3-203ENST00000542274 PLEKHH1Q9ULM0 1364 aa14□□□□□ -0.17
CDH3-203ENST00000542274 RIPK4P57078 832 aa13.99□□□□□ -0.17
CDH3-203ENST00000542274 TXNDC2Q86VQ3 553 aa13.99□□□□□ -0.17
CDH3-203ENST00000542274 PLIN1O60240 522 aa13.99□□□□□ -0.17
CDH3-203ENST00000542274 WDR43Q15061 677 aaKnown RBP eCLIP13.99□□□□□ -0.17
CDH3-203ENST00000542274 EGFL6Q8IUX8 553 aa13.98□□□□□ -0.17
CDH3-203ENST00000542274 GTPBP4Q9BZE4 634 aaKnown RBP13.98□□□□□ -0.17
CDH3-203ENST00000542274 SLC26A8Q96RN1 970 aa13.98□□□□□ -0.17
CDH3-203ENST00000542274 NSD3Q9BZ95 1437 aa13.97□□□□□ -0.17
CDH3-203ENST00000542274 ADAMTSL3P82987 1691 aa13.97□□□□□ -0.17
CDH3-203ENST00000542274 ZBTB9Q96C00 473 aa13.97□□□□□ -0.17
CDH3-203ENST00000542274 RCAN3Q9UKA8 241 aa13.97□□□□□ -0.17
CDH3-203ENST00000542274 SRPK2P78362 688 aaKnown RBP13.97□□□□□ -0.17
CDH3-203ENST00000542274 CGNQ9P2M7 1197 aaKnown RBP13.97□□□□□ -0.17
CDH3-203ENST00000542274 EVC2Q86UK5 1308 aa13.97□□□□□ -0.17
CDH3-203ENST00000542274 IRX5P78411 483 aaPredicted RBP13.96□□□□□ -0.17
CDH3-203ENST00000542274 FRAT2O75474 233 aaPredicted RBP13.96□□□□□ -0.18
CDH3-203ENST00000542274 HDGFP51858 240 aaKnown RBP13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms