RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 ARHGEF40Q8TER5 1519 aa16.1■□□□□ 0.17
RNF4-222ENST00000541204 NINLQ9Y2I6 1382 aa16.1■□□□□ 0.17
RNF4-222ENST00000541204 USP32Q8NFA0 1604 aa16.09■□□□□ 0.17
RNF4-222ENST00000541204 PANK1Q8TE04 598 aa16.09■□□□□ 0.17
RNF4-222ENST00000541204 NUTM2FA1L443 756 aa16.08■□□□□ 0.16
RNF4-222ENST00000541204 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
RNF4-222ENST00000541204 COG6Q9Y2V7 657 aa16.08■□□□□ 0.16
RNF4-222ENST00000541204 GSE1Q14687 1217 aa16.08■□□□□ 0.16
RNF4-222ENST00000541204 RTN4Q9NQC3 1192 aaKnown RBP16.08■□□□□ 0.16
RNF4-222ENST00000541204 PDE3AQ14432 1141 aa16.07■□□□□ 0.16
RNF4-222ENST00000541204 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.07■□□□□ 0.16
RNF4-222ENST00000541204 TNRQ92752 1358 aa16.07■□□□□ 0.16
RNF4-222ENST00000541204 CLUAP1Q96AJ1 413 aa16.06■□□□□ 0.16
RNF4-222ENST00000541204 ZRANB1Q9UGI0 708 aa16.06■□□□□ 0.16
RNF4-222ENST00000541204 TSR2Q969E8 191 aaKnown RBP16.06■□□□□ 0.16
RNF4-222ENST00000541204 WASLO00401 505 aaPredicted RBP16.05■□□□□ 0.16
RNF4-222ENST00000541204 MAPK8IP3Q9UPT6 1336 aa16.05■□□□□ 0.16
RNF4-222ENST00000541204 IQSEC2Q5JU85 1478 aa16.05■□□□□ 0.16
RNF4-222ENST00000541204 DIAPH1O60610 1272 aaKnown RBP16.04■□□□□ 0.16
RNF4-222ENST00000541204 NME9Q86XW9 330 aa16.04■□□□□ 0.16
RNF4-222ENST00000541204 TNNQ9UQP3 1299 aa16.04■□□□□ 0.16
RNF4-222ENST00000541204 WDR63Q8IWG1 891 aa16.04■□□□□ 0.16
RNF4-222ENST00000541204 SLC26A8Q96RN1 970 aa16.04■□□□□ 0.16
RNF4-222ENST00000541204 HDGFP51858 240 aaKnown RBP16.03■□□□□ 0.16
RNF4-222ENST00000541204 NUDT16Q96DE0 195 aaKnown RBP16.03■□□□□ 0.16
RNF4-222ENST00000541204 PHF23Q9BUL5 403 aaPredicted RBP16.03■□□□□ 0.16
RNF4-222ENST00000541204 NLRP1Q9C000 1473 aa16.03■□□□□ 0.16
RNF4-222ENST00000541204 RARSP54136 660 aaKnown RBP16.03■□□□□ 0.16
RNF4-222ENST00000541204 USP19O94966 1318 aa16.02■□□□□ 0.16
RNF4-222ENST00000541204 FRAT2O75474 233 aaPredicted RBP16.02■□□□□ 0.16
RNF4-222ENST00000541204 SEC24BO95487 1268 aa16.02■□□□□ 0.16
RNF4-222ENST00000541204 LTKP29376 864 aa16.02■□□□□ 0.16
RNF4-222ENST00000541204 PLEKHF1Q96S99 279 aa16.02■□□□□ 0.16
RNF4-222ENST00000541204 PPIP5K1Q6PFW1 1433 aa16.02■□□□□ 0.16
RNF4-222ENST00000541204 TMPOP42166 694 aaKnown RBP16.02■□□□□ 0.15
RNF4-222ENST00000541204 EMILIN1Q9Y6C2 1016 aa16.02■□□□□ 0.15
RNF4-222ENST00000541204 POLKQ9UBT6 870 aa16.01■□□□□ 0.15
RNF4-222ENST00000541204 VIRMAQ69YN4 1812 aaKnown RBP16.01■□□□□ 0.15
RNF4-222ENST00000541204 HMOX1P09601 288 aa16.01■□□□□ 0.15
RNF4-222ENST00000541204 TMEM2Q9UHN6 1383 aa16.01■□□□□ 0.15
RNF4-222ENST00000541204 RIPK4P57078 832 aa16■□□□□ 0.15
RNF4-222ENST00000541204 MYH16Q9H6N6 1097 aa16■□□□□ 0.15
RNF4-222ENST00000541204 CCDC27Q2M243 656 aa16■□□□□ 0.15
RNF4-222ENST00000541204 TRHP20396 242 aaPredicted RBP15.99■□□□□ 0.15
RNF4-222ENST00000541204 BRPF3Q9ULD4 1205 aa15.99■□□□□ 0.15
RNF4-222ENST00000541204 NRXN3Q9Y4C0 1643 aa15.99■□□□□ 0.15
RNF4-222ENST00000541204 RRS1Q15050 365 aaKnown RBP15.99■□□□□ 0.15
RNF4-222ENST00000541204 TRIM35Q9UPQ4 493 aa15.99■□□□□ 0.15
RNF4-222ENST00000541204 RLBP1P12271 317 aa15.98■□□□□ 0.15
RNF4-222ENST00000541204 DLC1Q96QB1 1528 aa15.98■□□□□ 0.15
RNF4-222ENST00000541204 CCDC61Q9Y6R9 512 aa15.98■□□□□ 0.15
RNF4-222ENST00000541204 COL3A1P02461 1466 aaPredicted RBP15.98■□□□□ 0.15
RNF4-222ENST00000541204 ROBO2Q9HCK4 1378 aa15.98■□□□□ 0.15
RNF4-222ENST00000541204 PRKAR2BP31323 418 aa15.98■□□□□ 0.15
RNF4-222ENST00000541204 EXOSC9Q06265 439 aaKnown RBP15.98■□□□□ 0.15
RNF4-222ENST00000541204 SETD1AO15047 1707 aaKnown RBP15.97■□□□□ 0.15
RNF4-222ENST00000541204 PCDHB15Q9Y5E8 787 aa15.97■□□□□ 0.15
RNF4-222ENST00000541204 SOX12O15370 315 aa15.96■□□□□ 0.15
RNF4-222ENST00000541204 PRR36Q9H6K5 1346 aa15.96■□□□□ 0.15
RNF4-222ENST00000541204 PMFBP1Q8TBY8 1022 aa15.95■□□□□ 0.14
RNF4-222ENST00000541204 COG3Q96JB2 828 aa15.95■□□□□ 0.14
RNF4-222ENST00000541204 THUMPD2Q9BTF0 503 aaKnown RBP15.95■□□□□ 0.14
RNF4-222ENST00000541204 MED14O60244 1454 aa15.95■□□□□ 0.14
RNF4-222ENST00000541204 ATP7BP35670 1465 aa15.95■□□□□ 0.14
RNF4-222ENST00000541204 PHACTR3Q96KR7 559 aa15.94■□□□□ 0.14
RNF4-222ENST00000541204 PNPLA6Q8IY17 1366 aa15.93■□□□□ 0.14
RNF4-222ENST00000541204 SMC4Q9NTJ3 1288 aa15.93■□□□□ 0.14
RNF4-222ENST00000541204 EID1Q9Y6B2 187 aa15.93■□□□□ 0.14
RNF4-222ENST00000541204 CPSF1Q10570 1443 aaKnown RBP15.93■□□□□ 0.14
RNF4-222ENST00000541204 EDC4Q6P2E9 1401 aaKnown RBP15.92■□□□□ 0.14
RNF4-222ENST00000541204 ADAMTS13Q76LX8 1427 aa15.92■□□□□ 0.14
RNF4-222ENST00000541204 FCHSD2O94868 740 aa15.92■□□□□ 0.14
RNF4-222ENST00000541204 RSPH6AQ9H0K4 717 aa15.92■□□□□ 0.14
RNF4-222ENST00000541204 PDZRN3Q9UPQ7 1066 aa15.92■□□□□ 0.14
RNF4-222ENST00000541204 ANO8Q9HCE9 1232 aaPredicted RBP15.92■□□□□ 0.14
RNF4-222ENST00000541204 SLKQ9H2G2 1235 aaPredicted RBP15.91■□□□□ 0.14
RNF4-222ENST00000541204 KIF20BQ96Q89 1820 aa15.91■□□□□ 0.14
RNF4-222ENST00000541204 CPS1P31327 1500 aa15.91■□□□□ 0.14
RNF4-222ENST00000541204 AAMPQ13685 434 aa15.91■□□□□ 0.14
RNF4-222ENST00000541204 BECN1Q14457 450 aa15.91■□□□□ 0.14
RNF4-222ENST00000541204 FTSJ3Q8IY81 847 aaKnown RBP15.91■□□□□ 0.14
RNF4-222ENST00000541204 FAM135BQ49AJ0 1406 aa15.91■□□□□ 0.14
RNF4-222ENST00000541204 ADGRB2O60241 1585 aa15.9■□□□□ 0.14
RNF4-222ENST00000541204 ANKRD26Q9UPS8 1709 aa15.9■□□□□ 0.14
RNF4-222ENST00000541204 SSH1Q8WYL5 1049 aa15.9■□□□□ 0.14
RNF4-222ENST00000541204 AMOTL2Q9Y2J4 779 aa15.9■□□□□ 0.14
RNF4-222ENST00000541204 UBR1Q8IWV7 1749 aa15.9■□□□□ 0.14
RNF4-222ENST00000541204 PNNQ9H307 717 aaKnown RBP15.9■□□□□ 0.14
RNF4-222ENST00000541204 ACEP12821 1306 aa15.89■□□□□ 0.13
RNF4-222ENST00000541204 IL13P35225 146 aa15.89■□□□□ 0.13
RNF4-222ENST00000541204 ZKSCAN2Q63HK3 967 aa15.88■□□□□ 0.13
RNF4-222ENST00000541204 RWDD1Q9H446 243 aaPredicted RBP15.88■□□□□ 0.13
RNF4-222ENST00000541204 TECPR2O15040 1411 aa15.88■□□□□ 0.13
RNF4-222ENST00000541204 SIRT1Q96EB6 747 aa15.88■□□□□ 0.13
RNF4-222ENST00000541204 UPF2Q9HAU5 1272 aaKnown RBP15.88■□□□□ 0.13
RNF4-222ENST00000541204 LRRC7Q96NW7 1537 aa15.88■□□□□ 0.13
RNF4-222ENST00000541204 PLEKHG1Q9ULL1 1385 aa15.87■□□□□ 0.13
RNF4-222ENST00000541204 ELL2O00472 640 aaPredicted RBP15.87■□□□□ 0.13
RNF4-222ENST00000541204 MVPQ14764 893 aaKnown RBP15.87■□□□□ 0.13
RNF4-222ENST00000541204 DZIP1LQ8IYY4 767 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms