RNA–Protein interactions for RNA: ENST00000540590.1

LMO3-223, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 565 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-223ENST00000540590 POLR3AO14802 1390 aaPredicted RBP17.1■□□□□ 0.33
LMO3-223ENST00000540590 BRD4O60885 1362 aaPredicted RBP17.1■□□□□ 0.33
LMO3-223ENST00000540590 KTN1Q86UP2 1357 aaKnown RBP17.1■□□□□ 0.33
LMO3-223ENST00000540590 ANKRD26Q9UPS8 1709 aa17.09■□□□□ 0.33
LMO3-223ENST00000540590 EDC4Q6P2E9 1401 aaKnown RBP17.08■□□□□ 0.32
LMO3-223ENST00000540590 NPC1L1Q9UHC9 1359 aa17.08■□□□□ 0.32
LMO3-223ENST00000540590 SLC4A2P04920 1241 aa17.08■□□□□ 0.32
LMO3-223ENST00000540590 AMER1Q5JTC6 1135 aaPredicted RBP17.08■□□□□ 0.32
LMO3-223ENST00000540590 PHF8Q9UPP1 1060 aa17.08■□□□□ 0.32
LMO3-223ENST00000540590 USP6P35125 1406 aa17.07■□□□□ 0.32
LMO3-223ENST00000540590 CNGB1Q14028 1251 aaPredicted RBP17.07■□□□□ 0.32
LMO3-223ENST00000540590 ESCO1Q5FWF5 840 aa17.07■□□□□ 0.32
LMO3-223ENST00000540590 ORAI2Q96SN7 254 aa17.07■□□□□ 0.32
LMO3-223ENST00000540590 ZNF692Q9BU19 519 aaPredicted RBP17.07■□□□□ 0.32
LMO3-223ENST00000540590 NGDNQ8NEJ9 315 aaKnown RBP17.06■□□□□ 0.32
LMO3-223ENST00000540590 PRKRIP1Q9H875 184 aaPredicted RBP17.06■□□□□ 0.32
LMO3-223ENST00000540590 CC2D1BQ5T0F9 858 aaKnown RBP17.05■□□□□ 0.32
LMO3-223ENST00000540590 NSD2O96028 1365 aa17.04■□□□□ 0.32
LMO3-223ENST00000540590 PARD3Q8TEW0 1356 aa17.04■□□□□ 0.32
LMO3-223ENST00000540590 CGNL1Q0VF96 1302 aa17.04■□□□□ 0.32
LMO3-223ENST00000540590 SSH2Q76I76 1423 aa17.04■□□□□ 0.32
LMO3-223ENST00000540590 ZNF219Q9P2Y4 722 aaPredicted RBP17.03■□□□□ 0.32
LMO3-223ENST00000540590 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.02■□□□□ 0.32
LMO3-223ENST00000540590 SLAIN2Q9P270 581 aa17.02■□□□□ 0.32
LMO3-223ENST00000540590 TRPM3Q9HCF6 1732 aaPredicted RBP17.01■□□□□ 0.31
LMO3-223ENST00000540590 RALBP1Q15311 655 aa17.01■□□□□ 0.31
LMO3-223ENST00000540590 PIK3C2AO00443 1686 aa17.01■□□□□ 0.31
LMO3-223ENST00000540590 TTC21BQ7Z4L5 1316 aa17■□□□□ 0.31
LMO3-223ENST00000540590 FYB1O15117 783 aa17■□□□□ 0.31
LMO3-223ENST00000540590 FOXO3O43524 673 aa16.99■□□□□ 0.31
LMO3-223ENST00000540590 BRINP3Q76B58 766 aa16.99■□□□□ 0.31
LMO3-223ENST00000540590 GGNBP2Q9H3C7 697 aa16.99■□□□□ 0.31
LMO3-223ENST00000540590 TTC21AQ8NDW8 1320 aa16.98■□□□□ 0.31
LMO3-223ENST00000540590 USP54Q70EL1 1684 aa16.98■□□□□ 0.31
LMO3-223ENST00000540590 NME9Q86XW9 330 aa16.98■□□□□ 0.31
LMO3-223ENST00000540590 NHSL1Q5SYE7 1610 aa16.98■□□□□ 0.31
LMO3-223ENST00000540590 MARF1Q9Y4F3 1742 aaKnown RBP16.98■□□□□ 0.31
LMO3-223ENST00000540590 PSME1Q06323 249 aa16.97■□□□□ 0.31
LMO3-223ENST00000540590 ROBO1Q9Y6N7 1651 aa16.97■□□□□ 0.31
LMO3-223ENST00000540590 MYBBP1AQ9BQG0 1328 aaKnown RBP16.96■□□□□ 0.31
LMO3-223ENST00000540590 MORC1Q86VD1 984 aa16.96■□□□□ 0.31
LMO3-223ENST00000540590 ALS2Q96Q42 1657 aa16.96■□□□□ 0.31
LMO3-223ENST00000540590 PXDNQ92626 1479 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 CCER2I3L3R5 266 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 ABCB7O75027 752 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 XPCQ01831 940 aaPredicted RBP16.95■□□□□ 0.3
LMO3-223ENST00000540590 KRT28Q7Z3Y7 464 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 DDX17Q92841 729 aaKnown RBP16.95■□□□□ 0.3
LMO3-223ENST00000540590 ZRANB1Q9UGI0 708 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 OVOS2A0A0J9YW53 1432 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 OVOS2Q6IE36 1432 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 NPHP3Q7Z494 1330 aa16.95■□□□□ 0.3
LMO3-223ENST00000540590 PAK3O75914 559 aaPredicted RBP16.93■□□□□ 0.3
LMO3-223ENST00000540590 MAP2P11137 1827 aaKnown RBP16.93■□□□□ 0.3
LMO3-223ENST00000540590 USP31Q70CQ4 1352 aa16.92■□□□□ 0.3
LMO3-223ENST00000540590 PPP2R1AP30153 589 aa16.92■□□□□ 0.3
LMO3-223ENST00000540590 CERKQ8TCT0 537 aa16.92■□□□□ 0.3
LMO3-223ENST00000540590 TNNT2P45379 298 aaPredicted RBP16.91■□□□□ 0.3
LMO3-223ENST00000540590 CCDC184Q52MB2 194 aa16.91■□□□□ 0.3
LMO3-223ENST00000540590 COG3Q96JB2 828 aa16.91■□□□□ 0.3
LMO3-223ENST00000540590 SBNO1A3KN83 1393 aa16.9■□□□□ 0.3
LMO3-223ENST00000540590 AHDC1Q5TGY3 1603 aaPredicted RBP16.9■□□□□ 0.3
LMO3-223ENST00000540590 TOM1O60784 492 aa16.9■□□□□ 0.3
LMO3-223ENST00000540590 NLRP13Q86W25 1043 aa16.9■□□□□ 0.3
LMO3-223ENST00000540590 ABTB2Q8N961 1025 aa16.9■□□□□ 0.3
LMO3-223ENST00000540590 SOS2Q07890 1332 aaPredicted RBP16.89■□□□□ 0.29
LMO3-223ENST00000540590 TNS3Q68CZ2 1445 aa16.88■□□□□ 0.29
LMO3-223ENST00000540590 NLRP6P59044 892 aa16.88■□□□□ 0.29
LMO3-223ENST00000540590 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
LMO3-223ENST00000540590 CRYBG1Q9Y4K1 1723 aa16.87■□□□□ 0.29
LMO3-223ENST00000540590 UBAP1LF5GYI3 381 aa16.87■□□□□ 0.29
LMO3-223ENST00000540590 MRS2Q9HD23 443 aa16.87■□□□□ 0.29
LMO3-223ENST00000540590 PHLPP1O60346 1717 aa16.86■□□□□ 0.29
LMO3-223ENST00000540590 SPATA31A3Q5VYP0 1347 aa16.86■□□□□ 0.29
LMO3-223ENST00000540590 AATKQ6ZMQ8 1374 aa16.86■□□□□ 0.29
LMO3-223ENST00000540590 SLIT3O75094 1523 aa16.86■□□□□ 0.29
LMO3-223ENST00000540590 PHRF1Q9P1Y6 1649 aaKnown RBP16.85■□□□□ 0.29
LMO3-223ENST00000540590 FBLN1P23142 703 aa16.85■□□□□ 0.29
LMO3-223ENST00000540590 SAMD1Q6SPF0 538 aaPredicted RBP16.85■□□□□ 0.29
LMO3-223ENST00000540590 MED1Q15648 1581 aaPredicted RBP16.85■□□□□ 0.29
LMO3-223ENST00000540590 LMOD2Q6P5Q4 547 aa16.84■□□□□ 0.29
LMO3-223ENST00000540590 ARHGEF10O15013 1369 aa16.84■□□□□ 0.29
LMO3-223ENST00000540590 LTN1O94822 1766 aa16.84■□□□□ 0.29
LMO3-223ENST00000540590 NFAT5O94916 1531 aa16.83■□□□□ 0.28
LMO3-223ENST00000540590 USP19O94966 1318 aa16.83■□□□□ 0.28
LMO3-223ENST00000540590 MTHFSP49914 203 aa16.83■□□□□ 0.28
LMO3-223ENST00000540590 PIP4K2BP78356 416 aa16.83■□□□□ 0.28
LMO3-223ENST00000540590 COL16A1Q07092 1604 aaPredicted RBP16.83■□□□□ 0.28
LMO3-223ENST00000540590 SMG6Q86US8 1419 aaKnown RBP16.83■□□□□ 0.28
LMO3-223ENST00000540590 ABCA3Q99758 1704 aa16.82■□□□□ 0.28
LMO3-223ENST00000540590 PEAK1Q9H792 1746 aa16.82■□□□□ 0.28
LMO3-223ENST00000540590 POLKQ9UBT6 870 aa16.82■□□□□ 0.28
LMO3-223ENST00000540590 SHPRHQ149N8 1683 aa16.81■□□□□ 0.28
LMO3-223ENST00000540590 SOX12O15370 315 aa16.81■□□□□ 0.28
LMO3-223ENST00000540590 KIF24Q5T7B8 1368 aa16.8■□□□□ 0.28
LMO3-223ENST00000540590 RRS1Q15050 365 aaKnown RBP16.8■□□□□ 0.28
LMO3-223ENST00000540590 EMILIN1Q9Y6C2 1016 aa16.8■□□□□ 0.28
LMO3-223ENST00000540590 COL3A1P02461 1466 aaPredicted RBP16.8■□□□□ 0.28
LMO3-223ENST00000540590 CDK12Q9NYV4 1490 aaPredicted RBP16.8■□□□□ 0.28
LMO3-223ENST00000540590 PLEKHG5O94827 1062 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms