RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 MARF1Q9Y4F3 1742 aaKnown RBP25.83■■□□□ 1.73
SNRPA1-203ENST00000540017 ATAD2Q6PL18 1390 aa25.82■■□□□ 1.72
SNRPA1-203ENST00000540017 FNBP4Q8N3X1 1017 aaPredicted RBP25.8■■□□□ 1.72
SNRPA1-203ENST00000540017 HAP1P54257 671 aaPredicted RBP25.79■■□□□ 1.72
SNRPA1-203ENST00000540017 NUTM2GQ5VZR2 741 aa25.79■■□□□ 1.72
SNRPA1-203ENST00000540017 CRYBG1Q9Y4K1 1723 aa25.79■■□□□ 1.72
SNRPA1-203ENST00000540017 USP6P35125 1406 aa25.79■■□□□ 1.72
SNRPA1-203ENST00000540017 USP21Q9UK80 565 aa25.76■■□□□ 1.71
SNRPA1-203ENST00000540017 SSH2Q76I76 1423 aa25.76■■□□□ 1.71
SNRPA1-203ENST00000540017 BCL9LQ86UU0 1499 aa25.75■■□□□ 1.71
SNRPA1-203ENST00000540017 CPSF1Q10570 1443 aaKnown RBP25.75■■□□□ 1.71
SNRPA1-203ENST00000540017 QTRT2Q9H974 415 aaKnown RBP25.75■■□□□ 1.71
SNRPA1-203ENST00000540017 AKAP12Q02952 1782 aa25.74■■□□□ 1.71
SNRPA1-203ENST00000540017 ABTB2Q8N961 1025 aa25.74■■□□□ 1.71
SNRPA1-203ENST00000540017 PUS7Q96PZ0 661 aaKnown RBP25.74■■□□□ 1.71
SNRPA1-203ENST00000540017 SLC12A5Q9H2X9 1139 aa25.74■■□□□ 1.71
SNRPA1-203ENST00000540017 CD163L1Q9NR16 1453 aa25.73■■□□□ 1.71
SNRPA1-203ENST00000540017 SOCS7O14512 581 aa25.73■■□□□ 1.71
SNRPA1-203ENST00000540017 SLIT2O94813 1529 aa25.73■■□□□ 1.71
SNRPA1-203ENST00000540017 BRD4O60885 1362 aaPredicted RBP25.72■■□□□ 1.71
SNRPA1-203ENST00000540017 FAM83GA6ND36 823 aa25.72■■□□□ 1.71
SNRPA1-203ENST00000540017 TMC1Q8TDI8 760 aa25.72■■□□□ 1.71
SNRPA1-203ENST00000540017 ZNF692Q9BU19 519 aaPredicted RBP25.72■■□□□ 1.71
SNRPA1-203ENST00000540017 PHRF1Q9P1Y6 1649 aaKnown RBP25.7■■□□□ 1.71
SNRPA1-203ENST00000540017 RXRBP28702 533 aa25.7■■□□□ 1.7
SNRPA1-203ENST00000540017 TTC21BQ7Z4L5 1316 aa25.69■■□□□ 1.7
SNRPA1-203ENST00000540017 SLC24A1O60721 1099 aa25.69■■□□□ 1.7
SNRPA1-203ENST00000540017 ATRNO75882 1429 aa25.69■■□□□ 1.7
SNRPA1-203ENST00000540017 KTN1Q86UP2 1357 aaKnown RBP25.69■■□□□ 1.7
SNRPA1-203ENST00000540017 USP19O94966 1318 aa25.68■■□□□ 1.7
SNRPA1-203ENST00000540017 TMF1P82094 1093 aa25.68■■□□□ 1.7
SNRPA1-203ENST00000540017 NRKQ7Z2Y5 1582 aa25.68■■□□□ 1.7
SNRPA1-203ENST00000540017 PIK3C2AO00443 1686 aa25.68■■□□□ 1.7
SNRPA1-203ENST00000540017 PLCH1Q4KWH8 1693 aa25.68■■□□□ 1.7
SNRPA1-203ENST00000540017 MON2Q7Z3U7 1717 aa25.67■■□□□ 1.7
SNRPA1-203ENST00000540017 TRPC5Q9UL62 973 aaPredicted RBP25.67■■□□□ 1.7
SNRPA1-203ENST00000540017 RBM6P78332 1123 aaKnown RBP25.66■■□□□ 1.7
SNRPA1-203ENST00000540017 NLRP13Q86W25 1043 aa25.66■■□□□ 1.7
SNRPA1-203ENST00000540017 UNC5CLQ8IV45 518 aa25.66■■□□□ 1.7
SNRPA1-203ENST00000540017 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.64■■□□□ 1.7
SNRPA1-203ENST00000540017 NLRP6P59044 892 aa25.64■■□□□ 1.7
SNRPA1-203ENST00000540017 ZC3H6P61129 1189 aaKnown RBP25.64■■□□□ 1.7
SNRPA1-203ENST00000540017 A0A1W2PP64 1363 aa25.64■■□□□ 1.69
SNRPA1-203ENST00000540017 KIAA0232Q92628 1395 aa25.64■■□□□ 1.69
SNRPA1-203ENST00000540017 HSPA5P11021 654 aaKnown RBP25.63■■□□□ 1.69
SNRPA1-203ENST00000540017 COL14A1Q05707 1796 aaKnown RBP25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 GCP02774 474 aa25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 EIF4G2P78344 907 aaKnown RBP eCLIP25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 HDGFL2Q7Z4V5 671 aaPredicted RBP25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 NWD2Q9ULI1 1742 aa25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 TTC21AQ8NDW8 1320 aa25.62■■□□□ 1.69
SNRPA1-203ENST00000540017 CHRNA2Q15822 529 aa25.61■■□□□ 1.69
SNRPA1-203ENST00000540017 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.61■■□□□ 1.69
SNRPA1-203ENST00000540017 PRDM11Q9NQV5 511 aa25.61■■□□□ 1.69
SNRPA1-203ENST00000540017 BTG4Q9NY30 223 aa25.61■■□□□ 1.69
SNRPA1-203ENST00000540017 TERF2IPQ9NYB0 399 aa25.61■■□□□ 1.69
SNRPA1-203ENST00000540017 CDK12Q9NYV4 1490 aaPredicted RBP25.6■■□□□ 1.69
SNRPA1-203ENST00000540017 NINLQ9Y2I6 1382 aa25.6■■□□□ 1.69
SNRPA1-203ENST00000540017 ZRANB1Q9UGI0 708 aa25.6■■□□□ 1.69
SNRPA1-203ENST00000540017 SLIT3O75094 1523 aa25.59■■□□□ 1.69
SNRPA1-203ENST00000540017 GJD4Q96KN9 370 aaPredicted RBP25.59■■□□□ 1.69
SNRPA1-203ENST00000540017 RGS12O14924 1447 aa25.59■■□□□ 1.69
SNRPA1-203ENST00000540017 NRAPQ86VF7 1730 aa25.59■■□□□ 1.69
SNRPA1-203ENST00000540017 EDC4Q6P2E9 1401 aaKnown RBP25.58■■□□□ 1.69
SNRPA1-203ENST00000540017 NME9Q86XW9 330 aa25.57■■□□□ 1.68
SNRPA1-203ENST00000540017 CPDO75976 1380 aa25.56■■□□□ 1.68
SNRPA1-203ENST00000540017 GLI3P10071 1580 aa25.56■■□□□ 1.68
SNRPA1-203ENST00000540017 VPS72Q15906 364 aa25.56■■□□□ 1.68
SNRPA1-203ENST00000540017 CDCA8Q53HL2 280 aa25.56■■□□□ 1.68
SNRPA1-203ENST00000540017 ANKRD36BQ8N2N9 1353 aa25.54■■□□□ 1.68
SNRPA1-203ENST00000540017 MYOM1P52179 1685 aa25.53■■□□□ 1.68
SNRPA1-203ENST00000540017 USP31Q70CQ4 1352 aa25.53■■□□□ 1.68
SNRPA1-203ENST00000540017 LMO7Q8WWI1 1683 aa25.52■■□□□ 1.68
SNRPA1-203ENST00000540017 CAMTA1Q9Y6Y1 1673 aa25.52■■□□□ 1.68
SNRPA1-203ENST00000540017 SOX12O15370 315 aa25.51■■□□□ 1.67
SNRPA1-203ENST00000540017 CCDC9Q9Y3X0 531 aaKnown RBP25.51■■□□□ 1.67
SNRPA1-203ENST00000540017 USP54Q70EL1 1684 aa25.5■■□□□ 1.67
SNRPA1-203ENST00000540017 ZBTB7CA1YPR0 619 aa25.49■■□□□ 1.67
SNRPA1-203ENST00000540017 NFAT5O94916 1531 aa25.48■■□□□ 1.67
SNRPA1-203ENST00000540017 C11orf95C9JLR9 678 aaPredicted RBP25.48■■□□□ 1.67
SNRPA1-203ENST00000540017 ARHGEF25Q86VW2 580 aa25.47■■□□□ 1.67
SNRPA1-203ENST00000540017 KCNH5Q8NCM2 988 aa25.47■■□□□ 1.67
SNRPA1-203ENST00000540017 STRN4Q9NRL3 753 aa25.47■■□□□ 1.67
SNRPA1-203ENST00000540017 POLR3GLQ9BT43 218 aa25.46■■□□□ 1.67
SNRPA1-203ENST00000540017 COL18A1P39060 1754 aa25.46■■□□□ 1.67
SNRPA1-203ENST00000540017 OVOS2A0A0J9YW53 1432 aa25.46■■□□□ 1.67
SNRPA1-203ENST00000540017 OVOS2Q6IE36 1432 aa25.46■■□□□ 1.67
SNRPA1-203ENST00000540017 AATKQ6ZMQ8 1374 aa25.45■■□□□ 1.67
SNRPA1-203ENST00000540017 SPATA31A5Q5VU36 1347 aa25.45■■□□□ 1.66
SNRPA1-203ENST00000540017 SPATA31A7Q8IWB4 1347 aa25.45■■□□□ 1.66
SNRPA1-203ENST00000540017 CARD14Q9BXL6 1004 aa25.45■■□□□ 1.66
SNRPA1-203ENST00000540017 AXIN2Q9Y2T1 843 aa25.44■■□□□ 1.66
SNRPA1-203ENST00000540017 ONECUT3O60422 494 aaPredicted RBP25.43■■□□□ 1.66
SNRPA1-203ENST00000540017 EVA1CP58658 441 aa25.42■■□□□ 1.66
SNRPA1-203ENST00000540017 LARP1Q6PKG0 1096 aaKnown RBP25.42■■□□□ 1.66
SNRPA1-203ENST00000540017 COL5A2P05997 1499 aaPredicted RBP25.41■■□□□ 1.66
SNRPA1-203ENST00000540017 SPATA31A1Q5TZJ5 1347 aa25.41■■□□□ 1.66
SNRPA1-203ENST00000540017 FYB1O15117 783 aa25.41■■□□□ 1.66
SNRPA1-203ENST00000540017 FAM98CQ17RN3 349 aaKnown RBP25.41■■□□□ 1.66
SNRPA1-203ENST00000540017 SEPT12Q8IYM1 358 aa25.41■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms