RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SNX21Q969T3 373 aa14.03□□□□□ -0.16
SYNE1-237ENST00000539504 ANKRD36BQ8N2N9 1353 aa14.02□□□□□ -0.16
SYNE1-237ENST00000539504 GAS2L3Q86XJ1 694 aa14.02□□□□□ -0.16
SYNE1-237ENST00000539504 RBM42Q9BTD8 480 aaKnown RBP14.02□□□□□ -0.16
SYNE1-237ENST00000539504 CIZ1Q9ULV3 898 aaPredicted RBP14.02□□□□□ -0.16
SYNE1-237ENST00000539504 ATP7AQ04656 1500 aa14.02□□□□□ -0.16
SYNE1-237ENST00000539504 ISY1Q9ULR0 285 aaKnown RBP14.02□□□□□ -0.17
SYNE1-237ENST00000539504 SHROOM2Q13796 1616 aa14.02□□□□□ -0.17
SYNE1-237ENST00000539504 MINK1Q8N4C8 1332 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-237ENST00000539504 PLEKHF1Q96S99 279 aa14.01□□□□□ -0.17
SYNE1-237ENST00000539504 DDX49Q9Y6V7 483 aaKnown RBP14.01□□□□□ -0.17
SYNE1-237ENST00000539504 ADGRL1O94910 1474 aa14.01□□□□□ -0.17
SYNE1-237ENST00000539504 KIAA1210Q9ULL0 1709 aa14.01□□□□□ -0.17
SYNE1-237ENST00000539504 K7ELQ4 463 aaPredicted RBP14□□□□□ -0.17
SYNE1-237ENST00000539504 SSFA2P28290 1259 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 BMP2KLQ5H9B9 411 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 VSIG10Q8N0Z9 540 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 SHPRHQ149N8 1683 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 VGFO15240 615 aaPredicted RBP14□□□□□ -0.17
SYNE1-237ENST00000539504 RAB3GAP1Q15042 981 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 TERF2IPQ9NYB0 399 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 NSD2O96028 1365 aa14□□□□□ -0.17
SYNE1-237ENST00000539504 CD2BP2O95400 341 aaKnown RBP14□□□□□ -0.17
SYNE1-237ENST00000539504 NCBP3Q53F19 620 aaKnown RBP14□□□□□ -0.17
SYNE1-237ENST00000539504 ABCC11Q96J66 1382 aa13.99□□□□□ -0.17
SYNE1-237ENST00000539504 PTMSP20962 102 aa13.99□□□□□ -0.17
SYNE1-237ENST00000539504 TBC1D9Q6ZT07 1266 aa13.99□□□□□ -0.17
SYNE1-237ENST00000539504 THUMPD2Q9BTF0 503 aaKnown RBP13.99□□□□□ -0.17
SYNE1-237ENST00000539504 ERBB4Q15303 1308 aa13.99□□□□□ -0.17
SYNE1-237ENST00000539504 CD109Q6YHK3 1445 aa13.99□□□□□ -0.17
SYNE1-237ENST00000539504 ZCCHC11Q5TAX3 1644 aaKnown RBP13.98□□□□□ -0.17
SYNE1-237ENST00000539504 PRKAR2BP31323 418 aa13.98□□□□□ -0.17
SYNE1-237ENST00000539504 CHMP4BQ9H444 224 aaKnown RBP13.98□□□□□ -0.17
SYNE1-237ENST00000539504 IL16Q14005 1332 aa13.98□□□□□ -0.17
SYNE1-237ENST00000539504 HMOX1P09601 288 aa13.98□□□□□ -0.17
SYNE1-237ENST00000539504 NASPP49321 788 aaPredicted RBP13.98□□□□□ -0.17
SYNE1-237ENST00000539504 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.98□□□□□ -0.17
SYNE1-237ENST00000539504 GCC1Q96CN9 775 aa13.98□□□□□ -0.17
SYNE1-237ENST00000539504 FYB1O15117 783 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 A0A1W2PP64 1363 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 FBLN1P23142 703 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 ALDH1L2Q3SY69 923 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 GAS2L2Q8NHY3 880 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 CHD1O14646 1710 aa13.97□□□□□ -0.17
SYNE1-237ENST00000539504 HDGFL2Q7Z4V5 671 aaPredicted RBP13.97□□□□□ -0.17
SYNE1-237ENST00000539504 DDIT3P35638 169 aa13.96□□□□□ -0.17
SYNE1-237ENST00000539504 RPGRIP1LQ68CZ1 1315 aa13.96□□□□□ -0.17
SYNE1-237ENST00000539504 KIF1BO60333 1816 aa13.96□□□□□ -0.17
SYNE1-237ENST00000539504 APBB1O00213 710 aa13.96□□□□□ -0.18
SYNE1-237ENST00000539504 RRP9O43818 475 aaKnown RBP13.95□□□□□ -0.18
SYNE1-237ENST00000539504 CDC45O75419 566 aa13.95□□□□□ -0.18
SYNE1-237ENST00000539504 MCTP1Q6DN14 999 aa13.95□□□□□ -0.18
SYNE1-237ENST00000539504 CFAP65Q6ZU64 1925 aaKnown RBP13.95□□□□□ -0.18
SYNE1-237ENST00000539504 ZBTB7BO15156 539 aaPredicted RBP13.95□□□□□ -0.18
SYNE1-237ENST00000539504 MSNP26038 577 aaKnown RBP13.95□□□□□ -0.18
SYNE1-237ENST00000539504 KIF2CQ99661 725 aa13.95□□□□□ -0.18
SYNE1-237ENST00000539504 DEPDC5O75140 1603 aa13.94□□□□□ -0.18
SYNE1-237ENST00000539504 CALD1Q05682 793 aaKnown RBP13.94□□□□□ -0.18
SYNE1-237ENST00000539504 TSPYL6Q8N831 410 aa13.94□□□□□ -0.18
SYNE1-237ENST00000539504 PUS7Q96PZ0 661 aaKnown RBP13.94□□□□□ -0.18
SYNE1-237ENST00000539504 EFCAB6Q5THR3 1501 aa13.94□□□□□ -0.18
SYNE1-237ENST00000539504 NRXN1Q9ULB1 1477 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 VWDEQ8N2E2 1590 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 CCDC173Q0VFZ6 552 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 PRAM1Q96QH2 718 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 NCOA3Q9Y6Q9 1424 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 FCHSD2O94868 740 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 BAG4O95429 457 aaKnown RBP13.93□□□□□ -0.18
SYNE1-237ENST00000539504 CAVIN1Q6NZI2 390 aaKnown RBP13.93□□□□□ -0.18
SYNE1-237ENST00000539504 NPATQ14207 1427 aa13.93□□□□□ -0.18
SYNE1-237ENST00000539504 QRICH2Q9H0J4 1663 aa13.92□□□□□ -0.18
SYNE1-237ENST00000539504 CABP1Q9NZU7 370 aa13.92□□□□□ -0.18
SYNE1-237ENST00000539504 PPIP5K1Q6PFW1 1433 aa13.91□□□□□ -0.18
SYNE1-237ENST00000539504 VAMP4O75379 141 aa13.91□□□□□ -0.18
SYNE1-237ENST00000539504 KIAA1211Q6ZU35 1233 aa13.91□□□□□ -0.18
SYNE1-237ENST00000539504 MRPL50Q8N5N7 158 aaKnown RBP13.91□□□□□ -0.18
SYNE1-237ENST00000539504 MROH2AA6NES4 1674 aa13.91□□□□□ -0.18
SYNE1-237ENST00000539504 TWISTNBQ3B726 338 aaPredicted RBP13.91□□□□□ -0.18
SYNE1-237ENST00000539504 PHACTR3Q96KR7 559 aa13.91□□□□□ -0.18
SYNE1-237ENST00000539504 SETBP1Q9Y6X0 1596 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 UHRF1BP1LA0JNW5 1464 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 MYO3AQ8NEV4 1616 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 GNAI1P63096 354 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 KLHL40Q2TBA0 621 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 FOXD4L5Q5VV16 416 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-237ENST00000539504 FOXD4L4Q8WXT5 416 aaPredicted RBP13.9□□□□□ -0.18
SYNE1-237ENST00000539504 ZNF428Q96B54 188 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 NEURL4Q96JN8 1562 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 ADGRB3O60242 1522 aa13.9□□□□□ -0.18
SYNE1-237ENST00000539504 RABEP1Q15276 862 aa13.9□□□□□ -0.19
SYNE1-237ENST00000539504 NFE2L2Q16236 605 aa13.9□□□□□ -0.19
SYNE1-237ENST00000539504 ZSCAN30Q86W11 494 aa13.9□□□□□ -0.19
SYNE1-237ENST00000539504 SIRT2Q8IXJ6 389 aa13.9□□□□□ -0.19
SYNE1-237ENST00000539504 NPM1P06748 294 aaKnown RBP eCLIP13.89□□□□□ -0.19
SYNE1-237ENST00000539504 NUCB2P80303 420 aa13.89□□□□□ -0.19
SYNE1-237ENST00000539504 ADGRB1O14514 1584 aa13.89□□□□□ -0.19
SYNE1-237ENST00000539504 PPRC1Q5VV67 1664 aaKnown RBP13.89□□□□□ -0.19
SYNE1-237ENST00000539504 TPM2P07951 284 aa13.88□□□□□ -0.19
SYNE1-237ENST00000539504 INO80Q9ULG1 1556 aaPredicted RBP13.88□□□□□ -0.19
SYNE1-237ENST00000539504 ATAD2Q6PL18 1390 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms