RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 A0A0G2JS52 829 aa10.45□□□□□ -0.74
LMO3-220ENST00000539232 PLEKHG5O94827 1062 aa10.45□□□□□ -0.74
LMO3-220ENST00000539232 NBPF14Q5TI25 921 aa10.45□□□□□ -0.74
LMO3-220ENST00000539232 STAC3Q96MF2 364 aa10.45□□□□□ -0.74
LMO3-220ENST00000539232 CCDC9Q9Y3X0 531 aaKnown RBP10.45□□□□□ -0.74
LMO3-220ENST00000539232 NWD2Q9ULI1 1742 aa10.44□□□□□ -0.74
LMO3-220ENST00000539232 WASLO00401 505 aaPredicted RBP10.44□□□□□ -0.74
LMO3-220ENST00000539232 PHF8Q9UPP1 1060 aa10.44□□□□□ -0.74
LMO3-220ENST00000539232 CDC42BPGQ6DT37 1551 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 DLC1Q96QB1 1528 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 PXDNQ92626 1479 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 KRT28Q7Z3Y7 464 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 RREB1Q92766 1687 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 USP32Q8NFA0 1604 aa10.43□□□□□ -0.74
LMO3-220ENST00000539232 CABLES1Q8TDN4 633 aa10.42□□□□□ -0.74
LMO3-220ENST00000539232 CDK19Q9BWU1 502 aa10.42□□□□□ -0.74
LMO3-220ENST00000539232 NUP188Q5SRE5 1749 aa10.41□□□□□ -0.74
LMO3-220ENST00000539232 SLC34A2O95436 690 aa10.41□□□□□ -0.74
LMO3-220ENST00000539232 PLCH1Q4KWH8 1693 aa10.41□□□□□ -0.74
LMO3-220ENST00000539232 SPATA31A3Q5VYP0 1347 aa10.4□□□□□ -0.74
LMO3-220ENST00000539232 UTRNP46939 3433 aa10.4□□□□□ -0.74
LMO3-220ENST00000539232 FAM98CQ17RN3 349 aaKnown RBP10.4□□□□□ -0.74
LMO3-220ENST00000539232 NUDT16Q96DE0 195 aaKnown RBP10.4□□□□□ -0.74
LMO3-220ENST00000539232 CABP2Q9NPB3 220 aa10.4□□□□□ -0.74
LMO3-220ENST00000539232 FAM182BQ5T319 152 aa10.39□□□□□ -0.75
LMO3-220ENST00000539232 CENPJQ9HC77 1338 aaPredicted RBP10.38□□□□□ -0.75
LMO3-220ENST00000539232 APBA3O96018 575 aa10.38□□□□□ -0.75
LMO3-220ENST00000539232 PSME1Q06323 249 aa10.38□□□□□ -0.75
LMO3-220ENST00000539232 KNDC1Q76NI1 1749 aa10.38□□□□□ -0.75
LMO3-220ENST00000539232 TRIM37O94972 964 aa10.37□□□□□ -0.75
LMO3-220ENST00000539232 LMOD2Q6P5Q4 547 aa10.37□□□□□ -0.75
LMO3-220ENST00000539232 FAM196AQ6ZSG2 479 aa10.37□□□□□ -0.75
LMO3-220ENST00000539232 NRKQ7Z2Y5 1582 aa10.37□□□□□ -0.75
LMO3-220ENST00000539232 ANKARQ7Z5J8 1434 aa10.37□□□□□ -0.75
LMO3-220ENST00000539232 ROCK2O75116 1388 aaKnown RBP10.37□□□□□ -0.75
LMO3-220ENST00000539232 HAP1P54257 671 aaPredicted RBP10.36□□□□□ -0.75
LMO3-220ENST00000539232 NUTM2GQ5VZR2 741 aa10.36□□□□□ -0.75
LMO3-220ENST00000539232 TONSLQ96HA7 1378 aa10.36□□□□□ -0.75
LMO3-220ENST00000539232 ATP7BP35670 1465 aa10.36□□□□□ -0.75
LMO3-220ENST00000539232 NGDNQ8NEJ9 315 aaKnown RBP10.35□□□□□ -0.75
LMO3-220ENST00000539232 GPRASP1Q5JY77 1395 aa10.35□□□□□ -0.75
LMO3-220ENST00000539232 FMN2Q9NZ56 1722 aa10.35□□□□□ -0.75
LMO3-220ENST00000539232 TULP4Q9NRJ4 1543 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 PLEKHG3A1L390 1219 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 FAM83GA6ND36 823 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 SRPK2P78362 688 aaKnown RBP10.34□□□□□ -0.75
LMO3-220ENST00000539232 SYT17Q9BSW7 474 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 CARD11Q9BXL7 1154 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 CABP1Q9NZU7 370 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 PCDH10Q9P2E7 1040 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 CCDC61Q9Y6R9 512 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 SBNO1A3KN83 1393 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 MYOM1P52179 1685 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 THSD7AQ9UPZ6 1657 aa10.34□□□□□ -0.75
LMO3-220ENST00000539232 ACEP12821 1306 aa10.33□□□□□ -0.76
LMO3-220ENST00000539232 TNS3Q68CZ2 1445 aa10.33□□□□□ -0.76
LMO3-220ENST00000539232 HSPA6P17066 643 aa10.33□□□□□ -0.76
LMO3-220ENST00000539232 CASZ1Q86V15 1759 aa10.33□□□□□ -0.76
LMO3-220ENST00000539232 NRAPQ86VF7 1730 aa10.33□□□□□ -0.76
LMO3-220ENST00000539232 PAK3O75914 559 aaPredicted RBP10.32□□□□□ -0.76
LMO3-220ENST00000539232 FHDC1Q9C0D6 1143 aaPredicted RBP10.32□□□□□ -0.76
LMO3-220ENST00000539232 POLR3AO14802 1390 aaPredicted RBP10.31□□□□□ -0.76
LMO3-220ENST00000539232 PTGER2P43116 358 aa10.31□□□□□ -0.76
LMO3-220ENST00000539232 ARHGEF28Q8N1W1 1705 aaKnown RBP10.3□□□□□ -0.76
LMO3-220ENST00000539232 SHANK3Q9BYB0 1731 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 CAPN15O75808 1086 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 PRELPP51888 382 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 TESK2Q96S53 571 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 PPIP5K1Q6PFW1 1433 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 SPATA31A5Q5VU36 1347 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 SPATA31A7Q8IWB4 1347 aa10.3□□□□□ -0.76
LMO3-220ENST00000539232 TRPM1Q7Z4N2 1603 aa10.29□□□□□ -0.76
LMO3-220ENST00000539232 ST20-MTHFSA0A0A6YYL1 179 aa10.29□□□□□ -0.76
LMO3-220ENST00000539232 ABCA3Q99758 1704 aa10.29□□□□□ -0.76
LMO3-220ENST00000539232 EIF3AQ14152 1382 aaKnown RBP10.28□□□□□ -0.76
LMO3-220ENST00000539232 CHRNA2Q15822 529 aa10.28□□□□□ -0.76
LMO3-220ENST00000539232 BTG4Q9NY30 223 aa10.28□□□□□ -0.76
LMO3-220ENST00000539232 EVC2Q86UK5 1308 aa10.28□□□□□ -0.76
LMO3-220ENST00000539232 ARHGEF10O15013 1369 aa10.27□□□□□ -0.76
LMO3-220ENST00000539232 ZBTB7AO95365 584 aa10.27□□□□□ -0.77
LMO3-220ENST00000539232 ZC3H6P61129 1189 aaKnown RBP10.27□□□□□ -0.77
LMO3-220ENST00000539232 CCER1Q8TC90 406 aaPredicted RBP10.27□□□□□ -0.77
LMO3-220ENST00000539232 SLC12A5Q9H2X9 1139 aa10.27□□□□□ -0.77
LMO3-220ENST00000539232 KIF1AQ12756 1690 aa10.27□□□□□ -0.77
LMO3-220ENST00000539232 KIAA1210Q9ULL0 1709 aa10.27□□□□□ -0.77
LMO3-220ENST00000539232 SSH2Q76I76 1423 aa10.26□□□□□ -0.77
LMO3-220ENST00000539232 GPR162Q16538 588 aa10.26□□□□□ -0.77
LMO3-220ENST00000539232 COL14A1Q05707 1796 aaKnown RBP10.26□□□□□ -0.77
LMO3-220ENST00000539232 MAP3K5Q99683 1374 aa10.26□□□□□ -0.77
LMO3-220ENST00000539232 RGPD3A6NKT7 1758 aaPredicted RBP10.25□□□□□ -0.77
LMO3-220ENST00000539232 RGPD8O14715 1765 aaPredicted RBP10.25□□□□□ -0.77
LMO3-220ENST00000539232 RGPD4Q7Z3J3 1758 aa10.25□□□□□ -0.77
LMO3-220ENST00000539232 ABTB2Q8N961 1025 aa10.25□□□□□ -0.77
LMO3-220ENST00000539232 ATF5Q9Y2D1 282 aaPredicted RBP10.25□□□□□ -0.77
LMO3-220ENST00000539232 KIAA0232Q92628 1395 aa10.25□□□□□ -0.77
LMO3-220ENST00000539232 COL13A1Q5TAT6 717 aaPredicted RBP10.24□□□□□ -0.77
LMO3-220ENST00000539232 PDGFDQ9GZP0 370 aaPredicted RBP10.24□□□□□ -0.77
LMO3-220ENST00000539232 ANO8Q9HCE9 1232 aaPredicted RBP10.24□□□□□ -0.77
LMO3-220ENST00000539232 USP19O94966 1318 aa10.24□□□□□ -0.77
LMO3-220ENST00000539232 TTC21BQ7Z4L5 1316 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms